Wall clock time and date at job start Mon Mar 30 2020 06:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47496 * 2 1 4 4 C 1.50704 * 109.46776 * 119.99593 * 2 1 3 5 5 H 1.07997 * 120.00047 * 117.73911 * 4 2 1 6 6 C 1.37878 * 120.00145 * 297.74598 * 4 2 1 7 7 N 1.31511 * 119.99816 * 2.92015 * 6 4 2 8 8 Si 1.86800 * 120.00071 * 182.65078 * 6 4 2 9 9 H 1.48501 * 109.47272 * 84.98901 * 8 6 4 10 10 H 1.48494 * 109.47333 * 204.98913 * 8 6 4 11 11 H 1.48498 * 109.46988 * 324.99006 * 8 6 4 12 12 C 1.50700 * 109.47067 * 239.99320 * 2 1 3 13 13 C 1.37758 * 119.67580 * 0.02562 * 12 2 1 14 14 C 1.39053 * 119.94950 * 179.97438 * 13 12 2 15 15 N 1.37821 * 133.39623 * 180.02562 * 14 13 12 16 16 H 0.97001 * 125.06877 * 359.97438 * 15 14 13 17 17 C 1.36812 * 109.86085 * 179.97438 * 15 14 13 18 18 C 1.34240 * 109.94505 * 359.97438 * 17 15 14 19 19 C 1.40671 * 119.47838 * 359.97438 * 14 13 12 20 20 C 1.39632 * 119.95757 * 0.02562 * 19 14 13 21 21 C 1.37833 * 119.63233 * 359.74352 * 20 19 14 22 22 F 1.35099 * 119.83386 * 180.27340 * 21 20 19 23 23 H 1.09005 * 109.47159 * 300.00549 * 1 2 3 24 24 H 1.08999 * 109.46368 * 60.00238 * 1 2 3 25 25 H 1.08996 * 109.47149 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47232 * 173.47898 * 3 2 1 27 27 H 1.09005 * 109.46428 * 293.47694 * 3 2 1 28 28 H 1.08998 * 109.47334 * 53.46845 * 3 2 1 29 29 H 0.96998 * 119.99769 * 179.73150 * 7 6 4 30 30 H 1.07990 * 120.02202 * 359.97438 * 13 12 2 31 31 H 1.08005 * 125.02708 * 179.97438 * 17 15 14 32 32 H 1.07994 * 126.49889 * 179.97438 * 18 17 15 33 33 H 1.07999 * 120.18214 * 179.97438 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6227 -1.6093 1.1320 6 6 1.7380 -0.2127 2.4823 7 7 0.9713 0.8488 2.6042 8 14 2.4221 -1.0507 4.0051 9 1 3.7892 -0.5397 4.2794 10 1 1.5432 -0.7612 5.1665 11 1 2.4779 -2.5175 3.7801 12 6 2.0324 -0.7106 -1.2304 13 6 1.1313 -1.2312 -2.1330 14 6 1.5885 -1.8875 -3.2704 15 7 0.9541 -2.4984 -4.3305 16 1 -0.0072 -2.5629 -4.4426 17 6 1.8825 -3.0004 -5.2011 18 6 3.1201 -2.7404 -4.7508 19 6 2.9726 -2.0125 -3.4881 20 6 3.8746 -1.4800 -2.5648 21 6 3.4003 -0.8290 -1.4463 22 9 4.2694 -0.3074 -0.5531 23 1 -0.3634 0.5139 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.1238 1.4446 0.1167 27 1 1.7752 1.9214 -0.9427 28 1 1.5846 1.9890 0.8257 29 1 0.7610 1.1965 3.4850 30 1 0.0706 -1.1297 -1.9572 31 1 1.6535 -3.5279 -6.1153 32 1 4.0486 -3.0161 -5.2285 33 1 4.9380 -1.5743 -2.7281 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260040075.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:01 Heat of formation + Delta-G solvation = 9.204146 kcal Electronic energy + Delta-G solvation = -17953.401317 eV Core-core repulsion = 15086.941603 eV Total energy + Delta-G solvation = -2866.459714 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -47.79818 -40.75439 -37.20416 -34.43912 -31.79455 -30.62361 -28.54178 -27.47675 -25.82002 -25.11913 -22.51457 -21.40902 -20.36069 -18.95181 -17.66697 -16.46566 -15.97250 -15.47904 -14.74390 -14.57353 -13.98296 -13.83108 -13.43883 -13.06119 -12.87602 -12.57068 -12.39316 -11.89641 -11.55252 -11.25515 -10.90169 -10.74534 -10.59486 -10.49448 -10.31510 -10.12290 -9.55011 -9.37760 -9.29482 -8.77706 -8.30166 -7.38215 -7.25674 -5.93980 -4.01848 1.56351 2.10149 3.02744 3.34919 3.40442 3.41825 3.45099 4.33875 4.50225 4.89413 5.19059 5.32026 5.33399 5.54754 5.75723 5.81848 5.99253 6.21653 6.37207 6.53128 6.72465 6.74866 6.81702 6.97980 7.03310 7.09445 7.14105 7.26797 7.38010 7.64158 7.68300 7.78319 7.84775 8.07216 8.18915 8.44913 8.95982 9.62072 11.08045 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.032769 B = 0.007154 C = 0.006740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.255394 B = 3912.850814 C = 4153.020784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.099 3.901 3 C -0.130 4.130 4 C -0.494 4.494 5 H 0.055 0.945 6 C 0.067 3.933 7 N -0.888 5.888 8 Si 0.892 3.108 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.276 1.276 12 C -0.038 4.038 13 C -0.123 4.123 14 C 0.086 3.914 15 N -0.600 5.600 16 H 0.412 0.588 17 C 0.039 3.961 18 C -0.206 4.206 19 C -0.106 4.106 20 C -0.129 4.129 21 C 0.094 3.906 22 F -0.129 7.129 23 H 0.087 0.913 24 H 0.012 0.988 25 H 0.029 0.971 26 H 0.040 0.960 27 H 0.007 0.993 28 H 0.085 0.915 29 H 0.259 0.741 30 H 0.129 0.871 31 H 0.164 0.836 32 H 0.140 0.860 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.072 -4.778 -12.544 13.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.099 3.901 3 C -0.188 4.188 4 C -0.532 4.532 5 H 0.073 0.927 6 C -0.134 4.134 7 N -0.527 5.527 8 Si 0.720 3.280 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.201 1.201 12 C -0.041 4.041 13 C -0.144 4.144 14 C -0.020 4.020 15 N -0.203 5.203 16 H 0.248 0.752 17 C -0.087 4.087 18 C -0.232 4.232 19 C -0.111 4.111 20 C -0.149 4.149 21 C 0.074 3.926 22 F -0.108 7.108 23 H 0.105 0.895 24 H 0.031 0.969 25 H 0.048 0.952 26 H 0.059 0.941 27 H 0.026 0.974 28 H 0.104 0.896 29 H 0.069 0.931 30 H 0.147 0.853 31 H 0.181 0.819 32 H 0.158 0.842 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.089 -4.662 -12.393 13.241 hybrid contribution 0.117 -0.508 0.857 1.003 sum 0.029 -5.170 -11.536 12.642 Atomic orbital electron populations 1.21897 0.97463 0.99062 1.00472 1.17222 0.92687 0.92127 0.88079 1.21842 1.00367 0.97407 0.99177 1.20949 1.32652 1.10141 0.89474 0.92667 1.24849 0.94879 0.95013 0.98670 1.69820 1.36567 1.23143 1.23176 0.86608 0.79014 0.79914 0.82489 1.20548 1.21349 1.20071 1.20447 0.90680 0.96173 0.96750 1.19962 1.00280 1.01876 0.92257 1.18336 0.91898 1.00497 0.91285 1.41722 1.08317 1.50678 1.19600 0.75243 1.21647 0.88668 1.02229 0.96157 1.21553 0.96801 1.07754 0.97093 1.18745 0.91755 1.03937 0.96626 1.20294 0.99250 1.01369 0.93952 1.17269 0.87394 0.99416 0.88546 1.91471 1.68378 1.84307 1.66604 0.89474 0.96937 0.95225 0.94124 0.97434 0.89634 0.93052 0.85286 0.81878 0.84184 0.85762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 6.92 37.16 0.26 -2.82 16 2 C 0.10 2.45 0.48 -156.81 -0.08 2.37 16 3 C -0.13 -3.22 7.81 37.16 0.29 -2.93 16 4 C -0.49 -13.49 7.01 -34.44 -0.24 -13.73 16 5 H 0.06 1.56 7.64 -52.49 -0.40 1.16 16 6 C 0.07 1.82 5.14 -17.82 -0.09 1.72 16 7 N -0.89 -24.41 9.44 55.43 0.52 -23.89 16 8 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 C -0.04 -0.86 4.72 -104.52 -0.49 -1.35 16 13 C -0.12 -2.40 8.98 -39.45 -0.35 -2.76 16 14 C 0.09 1.49 7.27 -83.95 -0.61 0.88 16 15 N -0.60 -7.86 6.08 -10.64 -0.06 -7.92 16 16 H 0.41 4.06 8.96 -40.82 -0.37 3.69 16 17 C 0.04 0.46 11.81 -16.74 -0.20 0.26 16 18 C -0.21 -2.86 11.08 -37.67 -0.42 -3.28 16 19 C -0.11 -1.87 6.37 -105.14 -0.67 -2.54 16 20 C -0.13 -2.42 10.07 -39.21 -0.40 -2.82 16 21 C 0.09 2.04 6.71 -39.45 -0.26 1.78 16 22 F -0.13 -3.01 14.38 2.25 0.03 -2.98 16 23 H 0.09 2.23 6.14 -51.93 -0.32 1.91 16 24 H 0.01 0.25 7.49 -51.93 -0.39 -0.14 16 25 H 0.03 0.66 7.50 -51.93 -0.39 0.27 16 26 H 0.04 1.01 6.45 -51.93 -0.33 0.68 16 27 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 28 H 0.08 2.25 6.22 -51.93 -0.32 1.93 16 29 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.13 2.35 5.84 -52.49 -0.31 2.04 16 31 H 0.16 1.20 8.06 -52.48 -0.42 0.78 16 32 H 0.14 1.60 8.06 -52.49 -0.42 1.17 16 33 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 271.99 15.07 4.10 4.10 Total: -1.00 -29.76 271.99 -7.35 -37.11 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -3.65 Total: 2.30 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: -3.26 Total: -25.21 kcal Atomic # 7 Polarization: -32.27 SS G_CDS: 0.46 Total: -31.81 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.03 Total: -2.98 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.76 -7.35 -37.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260040075.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.311 kcal (2) G-P(sol) polarization free energy of solvation -29.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds