Wall clock time and date at job start Mon Mar 30 2020 06:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47496 * 2 1 4 4 C 1.50704 * 109.46776 * 119.99593 * 2 1 3 5 5 H 1.07997 * 120.00047 * 117.73911 * 4 2 1 6 6 C 1.37878 * 120.00145 * 297.74598 * 4 2 1 7 7 N 1.31511 * 119.99816 * 2.92015 * 6 4 2 8 8 Si 1.86800 * 120.00071 * 182.65078 * 6 4 2 9 9 H 1.48501 * 109.47272 * 84.98901 * 8 6 4 10 10 H 1.48494 * 109.47333 * 204.98913 * 8 6 4 11 11 H 1.48498 * 109.46988 * 324.99006 * 8 6 4 12 12 C 1.50700 * 109.47067 * 239.99320 * 2 1 3 13 13 C 1.37758 * 119.67580 * 0.02562 * 12 2 1 14 14 C 1.39053 * 119.94950 * 179.97438 * 13 12 2 15 15 N 1.37821 * 133.39623 * 180.02562 * 14 13 12 16 16 H 0.97001 * 125.06877 * 359.97438 * 15 14 13 17 17 C 1.36812 * 109.86085 * 179.97438 * 15 14 13 18 18 C 1.34240 * 109.94505 * 359.97438 * 17 15 14 19 19 C 1.40671 * 119.47838 * 359.97438 * 14 13 12 20 20 C 1.39632 * 119.95757 * 0.02562 * 19 14 13 21 21 C 1.37833 * 119.63233 * 359.74352 * 20 19 14 22 22 F 1.35099 * 119.83386 * 180.27340 * 21 20 19 23 23 H 1.09005 * 109.47159 * 300.00549 * 1 2 3 24 24 H 1.08999 * 109.46368 * 60.00238 * 1 2 3 25 25 H 1.08996 * 109.47149 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47232 * 173.47898 * 3 2 1 27 27 H 1.09005 * 109.46428 * 293.47694 * 3 2 1 28 28 H 1.08998 * 109.47334 * 53.46845 * 3 2 1 29 29 H 0.96998 * 119.99769 * 179.73150 * 7 6 4 30 30 H 1.07990 * 120.02202 * 359.97438 * 13 12 2 31 31 H 1.08005 * 125.02708 * 179.97438 * 17 15 14 32 32 H 1.07994 * 126.49889 * 179.97438 * 18 17 15 33 33 H 1.07999 * 120.18214 * 179.97438 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6227 -1.6093 1.1320 6 6 1.7380 -0.2127 2.4823 7 7 0.9713 0.8488 2.6042 8 14 2.4221 -1.0507 4.0051 9 1 3.7892 -0.5397 4.2794 10 1 1.5432 -0.7612 5.1665 11 1 2.4779 -2.5175 3.7801 12 6 2.0324 -0.7106 -1.2304 13 6 1.1313 -1.2312 -2.1330 14 6 1.5885 -1.8875 -3.2704 15 7 0.9541 -2.4984 -4.3305 16 1 -0.0072 -2.5629 -4.4426 17 6 1.8825 -3.0004 -5.2011 18 6 3.1201 -2.7404 -4.7508 19 6 2.9726 -2.0125 -3.4881 20 6 3.8746 -1.4800 -2.5648 21 6 3.4003 -0.8290 -1.4463 22 9 4.2694 -0.3074 -0.5531 23 1 -0.3634 0.5139 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.1238 1.4446 0.1167 27 1 1.7752 1.9214 -0.9427 28 1 1.5846 1.9890 0.8257 29 1 0.7610 1.1965 3.4850 30 1 0.0706 -1.1297 -1.9572 31 1 1.6535 -3.5279 -6.1153 32 1 4.0486 -3.0161 -5.2285 33 1 4.9380 -1.5743 -2.7281 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260040075.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:01 Heat of formation + Delta-G solvation = -7.253338 kcal Electronic energy + Delta-G solvation = -17954.114967 eV Core-core repulsion = 15086.941603 eV Total energy + Delta-G solvation = -2867.173364 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.47278 -41.98239 -38.81295 -36.10147 -33.52713 -32.13221 -29.90394 -28.89735 -27.68156 -27.19470 -24.00150 -22.90603 -21.46316 -20.67920 -19.01244 -17.98296 -17.81420 -17.11167 -16.55128 -16.22118 -15.54425 -15.11874 -14.93351 -14.71106 -14.28912 -14.08807 -13.77238 -13.44434 -13.28170 -13.20603 -12.84946 -12.65194 -12.41272 -12.19957 -12.01995 -11.90002 -11.44243 -11.14070 -10.85897 -10.48499 -10.36202 -8.83255 -8.52069 -7.99875 -6.13887 0.19943 0.63108 1.40117 1.42426 1.50333 1.92876 2.34510 2.46204 2.90809 3.22876 3.59842 3.86457 4.15441 4.24058 4.43789 4.51935 4.73868 4.82334 4.84539 4.92609 5.02763 5.07877 5.20086 5.25661 5.35688 5.45629 5.53160 5.67393 5.70811 5.86013 5.88384 6.12223 6.19381 6.32184 6.44910 6.83216 6.87104 7.51365 8.99273 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.032769 B = 0.007154 C = 0.006740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.255394 B = 3912.850814 C = 4153.020784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.093 3.907 3 C -0.119 4.119 4 C -0.507 4.507 5 H 0.035 0.965 6 C 0.026 3.974 7 N -0.903 5.903 8 Si 0.942 3.058 9 H -0.281 1.281 10 H -0.279 1.279 11 H -0.276 1.276 12 C -0.074 4.074 13 C -0.120 4.120 14 C 0.074 3.926 15 N -0.587 5.587 16 H 0.429 0.571 17 C 0.073 3.927 18 C -0.229 4.229 19 C -0.118 4.118 20 C -0.126 4.126 21 C 0.058 3.942 22 F -0.150 7.150 23 H 0.061 0.939 24 H 0.033 0.967 25 H 0.031 0.969 26 H 0.025 0.975 27 H 0.021 0.979 28 H 0.064 0.936 29 H 0.260 0.740 30 H 0.137 0.863 31 H 0.220 0.780 32 H 0.165 0.835 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.477 -6.547 -15.302 16.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.093 3.907 3 C -0.177 4.177 4 C -0.545 4.545 5 H 0.054 0.946 6 C -0.173 4.173 7 N -0.543 5.543 8 Si 0.768 3.232 9 H -0.207 1.207 10 H -0.204 1.204 11 H -0.201 1.201 12 C -0.076 4.076 13 C -0.140 4.140 14 C -0.033 4.033 15 N -0.192 5.192 16 H 0.269 0.731 17 C -0.053 4.053 18 C -0.254 4.254 19 C -0.123 4.123 20 C -0.145 4.145 21 C 0.038 3.962 22 F -0.129 7.129 23 H 0.080 0.920 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.044 0.956 27 H 0.040 0.960 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.155 0.845 31 H 0.236 0.764 32 H 0.183 0.817 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.663 -6.437 -15.165 16.488 hybrid contribution 0.267 -0.053 1.505 1.530 sum -0.397 -6.490 -13.660 15.128 Atomic orbital electron populations 1.21718 0.96744 0.99020 1.00195 1.17152 0.93227 0.91751 0.88593 1.21688 0.99113 0.97991 0.98913 1.21123 1.32473 1.09785 0.91160 0.94626 1.25449 0.95304 0.95708 1.00832 1.69927 1.37050 1.23755 1.23532 0.85826 0.78376 0.78940 0.80023 1.20700 1.20390 1.20107 1.20238 0.91514 0.98739 0.97126 1.19961 1.00111 1.01424 0.92549 1.18300 0.92516 1.00707 0.91808 1.41844 1.09714 1.49327 1.18307 0.73140 1.22534 0.87310 0.99135 0.96314 1.21926 0.99129 1.08447 0.95903 1.19246 0.91703 1.03611 0.97764 1.20498 1.00597 1.00336 0.93118 1.17567 0.87268 1.01653 0.89741 1.91399 1.68920 1.84974 1.67607 0.91989 0.94760 0.95032 0.95610 0.95984 0.91739 0.93060 0.84523 0.76382 0.81723 0.83982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.65 6.92 71.98 0.50 -5.15 16 2 C 0.09 4.73 0.48 -53.67 -0.03 4.70 16 3 C -0.12 -6.11 7.81 71.98 0.56 -5.55 16 4 C -0.51 -28.69 7.01 25.60 0.18 -28.51 16 5 H 0.04 2.10 7.64 -2.91 -0.02 2.07 16 6 C 0.03 1.45 5.14 84.66 0.44 1.89 16 7 N -0.90 -50.95 9.44 21.45 0.20 -50.75 16 8 Si 0.94 45.05 29.54 68.60 2.03 47.08 16 9 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 12 C -0.07 -3.38 4.72 -19.80 -0.09 -3.47 16 13 C -0.12 -4.59 8.98 22.35 0.20 -4.39 16 14 C 0.07 2.40 7.27 38.99 0.28 2.69 16 15 N -0.59 -12.75 6.08 -187.57 -1.14 -13.89 16 16 H 0.43 6.42 8.96 -92.71 -0.83 5.59 16 17 C 0.07 1.28 11.81 83.00 0.98 2.26 16 18 C -0.23 -5.36 11.08 23.51 0.26 -5.10 16 19 C -0.12 -3.91 6.37 -20.20 -0.13 -4.03 16 20 C -0.13 -4.70 10.07 22.51 0.23 -4.47 16 21 C 0.06 2.59 6.71 22.35 0.15 2.74 16 22 F -0.15 -7.37 14.38 44.97 0.65 -6.72 16 23 H 0.06 3.24 6.14 -2.38 -0.01 3.22 16 24 H 0.03 1.42 7.49 -2.39 -0.02 1.40 16 25 H 0.03 1.42 7.50 -2.39 -0.02 1.40 16 26 H 0.02 1.33 6.45 -2.39 -0.02 1.32 16 27 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 28 H 0.06 3.52 6.22 -2.39 -0.01 3.51 16 29 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 30 H 0.14 4.83 5.84 -2.92 -0.02 4.82 16 31 H 0.22 1.43 8.06 -2.91 -0.02 1.41 16 32 H 0.17 2.97 8.06 -2.91 -0.02 2.94 16 33 H 0.14 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -67.00 271.99 5.57 -61.43 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 0.31 Total: 9.26 kcal Atomic # 6 Polarization: -49.93 SS G_CDS: 3.53 Total: -46.40 kcal Atomic # 7 Polarization: -63.70 SS G_CDS: -0.94 Total: -64.63 kcal Atomic # 9 Polarization: -7.37 SS G_CDS: 0.65 Total: -6.72 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -67.00 5.57 -61.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260040075.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.172 kcal (2) G-P(sol) polarization free energy of solvation -67.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds