Wall clock time and date at job start Mon Mar 30 2020 06:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00129 * 2 1 4 4 H 1.48501 * 109.47438 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47045 * 299.99992 * 3 2 1 6 6 H 1.48501 * 109.46950 * 59.99783 * 3 2 1 7 7 C 1.37878 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00306 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46959 * 299.99551 * 9 7 2 11 11 N 1.46901 * 109.47121 * 59.99793 * 9 7 2 12 12 C 1.50701 * 109.47269 * 179.97438 * 9 7 2 13 13 C 1.38166 * 120.02426 * 264.72651 * 12 9 7 14 14 C 1.38252 * 120.05044 * 179.74564 * 13 12 9 15 15 C 1.38290 * 120.11161 * 0.55393 * 14 13 12 16 16 C 1.38122 * 120.05514 * 359.69411 * 15 14 13 17 17 C 1.38706 * 120.02947 * 84.99579 * 12 9 7 18 18 O 1.35903 * 120.05629 * 359.96166 * 17 12 9 19 19 C 1.42894 * 117.00402 * 179.97438 * 18 17 12 20 20 C 1.52996 * 109.47641 * 179.97438 * 19 18 17 21 21 C 1.52999 * 117.50033 * 243.62484 * 20 19 18 22 22 C 1.52993 * 117.50192 * 174.99994 * 20 19 18 23 23 H 0.96999 * 120.00073 * 0.02562 * 1 2 3 24 24 H 1.00898 * 111.00245 * 59.99841 * 11 9 7 25 25 H 1.00904 * 111.00313 * 183.95658 * 11 9 7 26 26 H 1.07997 * 119.97782 * 0.02562 * 13 12 9 27 27 H 1.07994 * 119.94374 * 180.29306 * 14 13 12 28 28 H 1.07997 * 119.97286 * 179.72997 * 15 14 13 29 29 H 1.07997 * 120.02456 * 180.02562 * 16 15 14 30 30 H 1.08995 * 109.47057 * 299.99962 * 19 18 17 31 31 H 1.09003 * 109.47152 * 59.99659 * 19 18 17 32 32 H 1.09001 * 115.54824 * 29.32689 * 20 19 18 33 33 H 1.08998 * 117.49909 * 359.97438 * 21 20 19 34 34 H 1.09001 * 117.50110 * 145.01952 * 21 20 19 35 35 H 1.08999 * 117.49815 * 214.97582 * 22 20 19 36 36 H 1.09000 * 117.50101 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 7 0.4069 -2.5772 -1.1992 12 6 2.2304 -3.6446 0.0005 13 6 2.5960 -4.2415 -1.1907 14 6 3.4984 -5.2890 -1.1918 15 6 4.0284 -5.7494 -0.0004 16 6 3.6621 -5.1593 1.1935 17 6 2.7610 -4.1042 1.1968 18 8 2.3993 -3.5217 2.3702 19 6 2.9851 -4.0471 3.5630 20 6 2.4625 -3.2702 4.7730 21 6 3.4778 -2.4690 5.5904 22 6 2.8826 -3.7578 6.1609 23 1 -0.4850 0.8400 -0.0004 24 1 0.9652 -2.5259 -2.0381 25 1 -0.1571 -3.4138 -1.1907 26 1 2.1801 -3.8867 -2.1220 27 1 3.7866 -5.7512 -2.1243 28 1 4.7298 -6.5706 -0.0035 29 1 4.0766 -5.5190 2.1237 30 1 2.7204 -5.0995 3.6647 31 1 4.0693 -3.9487 3.5092 32 1 1.4604 -2.8544 4.6676 33 1 4.5181 -2.4958 5.2664 34 1 3.1438 -1.5259 6.0229 35 1 2.1571 -3.6625 6.9688 36 1 3.5310 -4.6325 6.2122 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260043120.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:26 Heat of formation + Delta-G solvation = 16.481358 kcal Electronic energy + Delta-G solvation = -17815.993583 eV Core-core repulsion = 15073.309738 eV Total energy + Delta-G solvation = -2742.683845 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.71092 -37.71474 -36.24117 -34.47150 -31.59580 -29.58246 -29.25290 -27.02733 -25.89508 -22.99722 -22.39043 -21.58472 -20.68624 -19.66225 -17.63024 -16.36609 -16.06263 -15.35919 -15.17461 -14.70086 -14.43975 -14.12265 -13.91085 -13.58457 -12.87850 -12.53839 -12.39567 -12.12749 -11.56671 -11.51778 -11.23705 -10.88147 -10.87513 -10.74586 -10.58241 -10.44831 -10.29205 -9.84332 -9.64852 -9.18103 -8.34612 -8.17384 -7.42231 -7.00781 -5.76641 -3.89280 1.93269 2.06611 3.38573 3.46202 3.50678 3.50829 3.93779 4.36887 4.60358 4.80567 4.90307 5.06780 5.26816 5.30741 5.40923 5.48549 5.50323 5.58196 5.63201 5.66926 5.88876 5.91057 6.09264 6.13832 6.19117 6.33822 6.38491 6.67125 6.89715 6.92931 7.10136 7.42381 7.64260 8.00873 8.07205 8.34201 8.73316 9.09400 9.25253 9.77188 11.27902 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.013770 B = 0.009352 C = 0.006291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.872839 B = 2993.150020 C = 4449.531603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.083 3.917 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.516 4.516 8 H 0.050 0.950 9 C 0.261 3.739 10 H 0.053 0.947 11 N -0.811 5.811 12 C -0.100 4.100 13 C -0.098 4.098 14 C -0.159 4.159 15 C -0.110 4.110 16 C -0.216 4.216 17 C 0.130 3.870 18 O -0.288 6.288 19 C 0.091 3.909 20 C -0.150 4.150 21 C -0.175 4.175 22 C -0.175 4.175 23 H 0.253 0.747 24 H 0.316 0.684 25 H 0.298 0.702 26 H 0.122 0.878 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.119 0.881 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.335 -10.121 6.416 13.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.123 4.123 3 Si 0.709 3.291 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.555 4.555 8 H 0.068 0.932 9 C 0.152 3.848 10 H 0.071 0.929 11 N -0.337 5.337 12 C -0.103 4.103 13 C -0.116 4.116 14 C -0.178 4.178 15 C -0.129 4.129 16 C -0.235 4.235 17 C 0.084 3.916 18 O -0.201 6.201 19 C 0.016 3.984 20 C -0.168 4.168 21 C -0.212 4.212 22 C -0.212 4.212 23 H 0.063 0.937 24 H 0.129 0.871 25 H 0.108 0.892 26 H 0.140 0.860 27 H 0.130 0.870 28 H 0.130 0.870 29 H 0.134 0.866 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.137 0.863 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.675 -9.147 6.724 12.692 hybrid contribution 1.350 -0.145 -0.153 1.366 sum 7.025 -9.291 6.571 13.374 Atomic orbital electron populations 1.70118 1.05567 1.25288 1.47450 1.24914 0.94605 0.98320 0.94454 0.86738 0.80306 0.84652 0.77397 1.19997 1.21142 1.21173 1.20772 0.92013 0.89346 1.53411 0.93152 1.18045 0.87473 0.88493 0.90814 0.92891 1.59204 1.28117 1.41978 1.04405 1.21248 1.00635 0.98994 0.89459 1.20838 0.97611 0.95680 0.97494 1.20908 1.00221 0.99246 0.97411 1.20652 1.00175 0.99800 0.92227 1.21121 1.03259 1.00328 0.98823 1.18874 0.94550 0.92039 0.86089 1.86255 1.65151 1.56729 1.11952 1.22164 0.96716 0.96410 0.83152 1.22097 1.01112 1.03378 0.90175 1.23056 0.98696 0.95659 1.03768 1.22962 1.03878 0.98449 0.95935 0.93692 0.87092 0.89207 0.85992 0.86998 0.87021 0.86634 0.92429 0.92568 0.86260 0.88718 0.88448 0.88438 0.88890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.30 12.77 55.43 0.71 -24.59 16 2 C 0.08 2.38 5.39 -17.82 -0.10 2.29 16 3 Si 0.88 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.52 -14.68 8.71 -34.44 -0.30 -14.98 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.26 6.71 2.57 -70.02 -0.18 6.53 16 10 H 0.05 1.53 7.69 -51.93 -0.40 1.13 16 11 N -0.81 -19.42 8.13 -6.65 -0.05 -19.47 16 12 C -0.10 -2.22 5.00 -104.47 -0.52 -2.74 16 13 C -0.10 -1.88 9.26 -39.60 -0.37 -2.25 16 14 C -0.16 -2.65 10.04 -39.56 -0.40 -3.05 16 15 C -0.11 -1.76 10.04 -39.60 -0.40 -2.16 16 16 C -0.22 -3.73 9.04 -39.43 -0.36 -4.08 16 17 C 0.13 2.69 6.66 -39.22 -0.26 2.43 16 18 O -0.29 -5.96 9.27 -19.44 -0.18 -6.14 16 19 C 0.09 1.41 5.02 37.16 0.19 1.59 16 20 C -0.15 -2.11 6.06 -90.63 -0.55 -2.66 16 21 C -0.17 -2.15 10.18 -26.73 -0.27 -2.42 16 22 C -0.18 -1.87 10.25 -26.74 -0.27 -2.15 16 23 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 24 H 0.32 7.14 7.20 -39.29 -0.28 6.85 16 25 H 0.30 6.38 9.06 -39.29 -0.36 6.03 16 26 H 0.12 2.21 6.28 -52.49 -0.33 1.88 16 27 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 28 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 29 H 0.12 1.67 6.30 -52.49 -0.33 1.34 16 30 H 0.06 0.78 7.66 -51.93 -0.40 0.39 16 31 H 0.06 0.81 7.39 -51.93 -0.38 0.42 16 32 H 0.12 1.85 8.14 -51.93 -0.42 1.43 16 33 H 0.09 1.11 8.03 -51.93 -0.42 0.69 16 34 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 303.62 15.07 4.58 4.58 Total: -1.00 -31.44 303.62 -8.73 -40.17 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -4.98 Total: 12.12 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: -3.79 Total: -23.64 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: 0.65 Total: -44.06 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: -0.18 Total: -6.14 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.44 -8.73 -40.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260043120.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.654 kcal (2) G-P(sol) polarization free energy of solvation -31.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds