Wall clock time and date at job start Mon Mar 30 2020 06:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99992 * 2 1 4 4 H 1.48506 * 109.46846 * 269.99707 * 3 2 1 5 5 H 1.48498 * 109.47390 * 29.99332 * 3 2 1 6 6 H 1.48499 * 109.47073 * 149.99955 * 3 2 1 7 7 C 1.37879 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99863 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00174 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.47301 * 59.99535 * 9 7 2 11 11 N 1.46900 * 109.46679 * 300.00063 * 9 7 2 12 12 C 1.50694 * 109.47305 * 179.97438 * 9 7 2 13 13 C 1.38173 * 120.02769 * 100.00016 * 12 9 7 14 14 C 1.38232 * 120.05858 * 179.97438 * 13 12 9 15 15 C 1.38294 * 120.11124 * 0.02562 * 14 13 12 16 16 C 1.38122 * 120.05499 * 359.97438 * 15 14 13 17 17 C 1.38705 * 120.03060 * 280.29492 * 12 9 7 18 18 O 1.35904 * 120.05898 * 0.02562 * 17 12 9 19 19 C 1.42900 * 117.00131 * 180.29486 * 18 17 12 20 20 C 1.52997 * 109.47009 * 180.02562 * 19 18 17 21 21 C 1.53001 * 117.49905 * 243.62558 * 20 19 18 22 22 C 1.52999 * 117.49913 * 175.00063 * 20 19 18 23 23 H 0.96997 * 119.99928 * 0.02562 * 1 2 3 24 24 H 1.00902 * 111.00165 * 299.99473 * 11 9 7 25 25 H 1.00901 * 111.00282 * 63.95775 * 11 9 7 26 26 H 1.08008 * 119.97007 * 359.97438 * 13 12 9 27 27 H 1.08003 * 119.94745 * 179.97438 * 14 13 12 28 28 H 1.08000 * 119.97251 * 179.97438 * 15 14 13 29 29 H 1.08002 * 120.02504 * 180.02562 * 16 15 14 30 30 H 1.09000 * 109.46950 * 300.00206 * 19 18 17 31 31 H 1.08994 * 109.46928 * 60.00366 * 19 18 17 32 32 H 1.09001 * 115.55316 * 29.32715 * 20 19 18 33 33 H 1.09000 * 117.49943 * 359.97438 * 21 20 19 34 34 H 1.08998 * 117.49943 * 145.01824 * 21 20 19 35 35 H 1.09002 * 117.49682 * 214.97216 * 22 20 19 36 36 H 1.08995 * 117.49903 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5116 -1.1941 0.0011 10 1 3.8746 -0.6800 0.8911 11 7 4.0016 -0.5019 -1.1983 12 6 4.0139 -2.6149 0.0023 13 6 4.4407 -3.1983 -1.1753 14 6 4.9020 -4.5014 -1.1749 15 6 4.9373 -5.2245 0.0034 16 6 4.5118 -4.6459 1.1832 17 6 4.0425 -3.3401 1.1843 18 8 3.6171 -2.7707 2.3427 19 6 3.6811 -3.5746 3.5224 20 6 3.1638 -2.7700 4.7165 21 6 4.1517 -2.4652 5.8443 22 6 3.0412 -3.4959 6.0577 23 1 -0.4850 0.8400 -0.0004 24 1 3.6784 -0.9596 -2.0374 25 1 3.7322 0.4705 -1.1901 26 1 4.4137 -2.6357 -2.0969 27 1 5.2348 -4.9558 -2.0964 28 1 5.2978 -6.2426 0.0011 29 1 4.5399 -5.2109 2.1032 30 1 3.0652 -4.4641 3.3898 31 1 4.7139 -3.8716 3.7041 32 1 2.4155 -2.0122 4.4841 33 1 5.1701 -2.8383 5.7359 34 1 4.0535 -1.5068 6.3540 35 1 2.2125 -3.2153 6.7079 36 1 3.3294 -4.5465 6.0895 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260043122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:28 Heat of formation + Delta-G solvation = -2.085353 kcal Electronic energy + Delta-G solvation = -17873.973542 eV Core-core repulsion = 15130.484584 eV Total energy + Delta-G solvation = -2743.488958 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.12911 -38.96544 -37.49273 -36.68142 -34.00072 -31.26385 -30.93627 -28.32359 -28.07690 -24.76621 -23.32179 -23.02814 -22.03224 -21.07436 -19.24843 -18.97220 -17.66574 -16.98771 -16.59854 -16.38486 -16.22366 -15.60836 -15.32516 -14.90281 -14.84887 -14.14368 -13.97186 -13.70271 -13.44568 -13.09108 -12.80161 -12.54156 -12.42248 -12.30123 -12.07512 -11.96707 -11.77296 -11.41998 -11.30923 -10.90876 -10.87775 -9.73113 -9.44472 -8.84239 -8.38702 -6.44457 0.57437 0.67568 1.19589 1.29178 1.39089 2.20711 2.30897 2.87832 2.93975 3.01126 3.75581 3.84475 3.89294 4.01905 4.09306 4.15134 4.21558 4.37815 4.40043 4.58435 4.64685 4.67774 4.73039 4.86215 4.96135 4.99766 5.19734 5.21292 5.28581 5.41605 5.55918 5.68151 5.71431 6.03038 6.10387 6.40656 6.55854 6.66953 6.74517 7.20239 8.78066 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.014760 B = 0.009438 C = 0.006411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.584280 B = 2965.936217 C = 4366.314924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.015 3.985 3 Si 0.938 3.062 4 H -0.250 1.250 5 H -0.291 1.291 6 H -0.256 1.256 7 C -0.529 4.529 8 H 0.024 0.976 9 C 0.227 3.773 10 H 0.030 0.970 11 N -0.836 5.836 12 C -0.102 4.102 13 C -0.088 4.088 14 C -0.160 4.160 15 C -0.094 4.094 16 C -0.216 4.216 17 C 0.107 3.893 18 O -0.329 6.329 19 C 0.090 3.910 20 C -0.189 4.189 21 C -0.170 4.170 22 C -0.148 4.148 23 H 0.267 0.733 24 H 0.339 0.661 25 H 0.315 0.685 26 H 0.132 0.868 27 H 0.150 0.850 28 H 0.157 0.843 29 H 0.146 0.854 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.188 -9.046 6.437 15.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.183 4.183 3 Si 0.763 3.237 4 H -0.175 1.175 5 H -0.218 1.218 6 H -0.180 1.180 7 C -0.569 4.569 8 H 0.042 0.958 9 C 0.117 3.883 10 H 0.048 0.952 11 N -0.370 5.370 12 C -0.104 4.104 13 C -0.106 4.106 14 C -0.178 4.178 15 C -0.112 4.112 16 C -0.234 4.234 17 C 0.061 3.939 18 O -0.243 6.243 19 C 0.015 3.985 20 C -0.207 4.207 21 C -0.206 4.206 22 C -0.185 4.185 23 H 0.076 0.924 24 H 0.152 0.848 25 H 0.131 0.869 26 H 0.150 0.850 27 H 0.168 0.832 28 H 0.175 0.825 29 H 0.163 0.837 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.126 0.874 34 H 0.118 0.882 35 H 0.126 0.874 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 11.692 -8.924 6.753 16.185 hybrid contribution -1.499 1.090 -0.122 1.857 sum 10.193 -7.834 6.631 14.466 Atomic orbital electron populations 1.70051 1.07996 1.28092 1.51903 1.25865 0.95604 1.02829 0.94023 0.85957 0.78934 0.78956 0.79819 1.17474 1.21778 1.18002 1.21713 0.91773 0.92815 1.50576 0.95757 1.17929 0.90794 0.89469 0.90059 0.95240 1.59708 1.66171 1.05379 1.05737 1.19474 1.01962 0.96694 0.92222 1.20992 0.97213 0.95706 0.96718 1.21343 1.02917 0.93936 0.99615 1.21232 0.98034 1.00621 0.91285 1.21412 1.06988 0.93770 1.01242 1.19095 0.96097 0.92879 0.85809 1.86187 1.80348 1.42560 1.15216 1.22411 1.00940 0.93092 0.82075 1.22087 1.04580 1.04412 0.89631 1.23183 0.95853 1.01190 1.00417 1.23091 1.01192 0.98772 0.95403 0.92369 0.84771 0.86930 0.85000 0.83208 0.82534 0.83665 0.91600 0.90424 0.89595 0.87362 0.88182 0.87417 0.86650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.80 13.96 21.45 0.30 -59.51 16 2 C 0.02 0.90 5.47 84.66 0.46 1.37 16 3 Si 0.94 45.33 24.61 68.60 1.69 47.02 16 4 H -0.25 -10.96 7.01 99.48 0.70 -10.26 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.26 -12.13 6.54 99.48 0.65 -11.48 16 7 C -0.53 -31.64 9.28 25.60 0.24 -31.41 16 8 H 0.02 1.64 7.98 -2.91 -0.02 1.62 16 9 C 0.23 11.60 2.13 43.42 0.09 11.69 16 10 H 0.03 1.64 6.92 -2.39 -0.02 1.62 16 11 N -0.84 -37.60 8.62 -174.96 -1.51 -39.11 16 12 C -0.10 -4.63 5.04 -19.77 -0.10 -4.73 16 13 C -0.09 -3.33 9.25 22.25 0.21 -3.13 16 14 C -0.16 -4.81 10.04 22.28 0.22 -4.59 16 15 C -0.09 -2.62 10.04 22.26 0.22 -2.39 16 16 C -0.22 -6.96 9.04 22.37 0.20 -6.76 16 17 C 0.11 4.47 6.65 22.51 0.15 4.62 16 18 O -0.33 -14.24 9.38 -92.47 -0.87 -15.11 16 19 C 0.09 2.79 5.02 71.98 0.36 3.15 16 20 C -0.19 -5.50 6.06 -10.79 -0.07 -5.57 16 21 C -0.17 -3.73 10.18 30.60 0.31 -3.42 16 22 C -0.15 -2.97 10.25 30.60 0.31 -2.66 16 23 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 24 H 0.34 14.23 7.29 -89.69 -0.65 13.58 16 25 H 0.32 14.19 4.30 -89.69 -0.39 13.80 16 26 H 0.13 4.69 6.25 -2.91 -0.02 4.67 16 27 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 28 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 29 H 0.15 3.73 6.30 -2.91 -0.02 3.72 16 30 H 0.07 1.90 7.66 -2.39 -0.02 1.88 16 31 H 0.08 1.99 7.40 -2.39 -0.02 1.98 16 32 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 33 H 0.11 2.07 8.03 -2.39 -0.02 2.05 16 34 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -72.54 294.80 2.22 -70.32 By element: Atomic # 1 Polarization: 40.23 SS G_CDS: -0.01 Total: 40.22 kcal Atomic # 6 Polarization: -46.46 SS G_CDS: 2.62 Total: -43.84 kcal Atomic # 7 Polarization: -97.41 SS G_CDS: -1.21 Total: -98.62 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.87 Total: -15.11 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.69 Total: 47.02 kcal Total: -72.54 2.22 -70.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260043122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.234 kcal (2) G-P(sol) polarization free energy of solvation -72.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds