Wall clock time and date at job start Mon Mar 30 2020 06:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47108 * 2 1 4 4 C 1.36895 * 125.05886 * 265.02014 * 3 2 1 5 5 C 1.34214 * 109.91377 * 179.97438 * 4 3 2 6 6 C 1.50699 * 126.50029 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47363 * 265.02724 * 6 5 4 8 8 H 1.08001 * 119.99523 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00211 * 179.97438 * 7 6 5 10 10 N 1.31521 * 119.99929 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00265 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46921 * 59.99908 * 11 9 7 13 13 H 1.48496 * 109.47243 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.46991 * 300.00342 * 11 9 7 15 15 C 1.46494 * 106.99720 * 0.02562 * 5 4 3 16 16 C 1.37703 * 125.06764 * 84.97730 * 3 2 1 17 17 C 1.39125 * 133.40899 * 0.06354 * 16 3 2 18 18 C 1.37746 * 119.96256 * 179.97438 * 17 16 3 19 19 C 1.38788 * 120.69727 * 0.03024 * 18 17 16 20 20 C 1.37873 * 120.35045 * 359.97438 * 19 18 17 21 21 F 1.35099 * 120.19406 * 180.02562 * 20 19 18 22 22 H 1.08999 * 109.47203 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47351 * 300.00280 * 1 2 3 24 24 H 1.09003 * 109.47043 * 60.00330 * 1 2 3 25 25 H 1.08994 * 109.47351 * 239.99720 * 2 1 3 26 26 H 1.09003 * 109.47043 * 119.99669 * 2 1 3 27 27 H 1.08003 * 125.04061 * 359.70664 * 4 3 2 28 28 H 1.09003 * 109.47422 * 25.02674 * 6 5 4 29 29 H 1.09000 * 109.47425 * 145.02227 * 6 5 4 30 30 H 0.96997 * 119.99623 * 179.97438 * 10 9 7 31 31 H 1.07998 * 120.01730 * 359.94657 * 17 16 3 32 32 H 1.08003 * 119.65070 * 180.02562 * 18 17 16 33 33 H 1.08003 * 119.82987 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3722 2.0902 -1.1163 5 6 2.7748 3.3219 -0.7671 6 6 3.2456 4.4089 -1.6986 7 6 4.7495 4.3765 -1.7891 8 1 5.3085 3.6425 -1.2278 9 6 5.4118 5.2839 -2.5885 10 7 4.7309 6.1775 -3.2724 11 14 7.2759 5.2433 -2.7012 12 1 7.7116 3.9223 -3.2210 13 1 7.7398 6.3145 -3.6191 14 1 7.8582 5.4611 -1.3527 15 6 2.6710 3.4089 0.6916 16 6 2.1890 2.1600 1.1227 17 6 1.9849 1.9374 2.4808 18 6 2.2537 2.9369 3.3898 19 6 2.7278 4.1707 2.9666 20 6 2.9374 4.4139 1.6258 21 9 3.3994 5.6160 1.2175 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.3370 1.7127 -2.1276 28 1 2.8185 4.2492 -2.6887 29 1 2.9253 5.3785 -1.3170 30 1 5.1969 6.8161 -3.8344 31 1 1.6155 0.9817 2.8221 32 1 2.0939 2.7584 4.4429 33 1 2.9343 4.9443 3.6915 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260079932.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:57 Heat of formation + Delta-G solvation = 3.807699 kcal Electronic energy + Delta-G solvation = -17521.728562 eV Core-core repulsion = 14655.034841 eV Total energy + Delta-G solvation = -2866.693721 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.03057 -40.79259 -36.55690 -34.27152 -32.67153 -30.53766 -29.13583 -28.75893 -26.50467 -23.66887 -22.70802 -22.03134 -20.80081 -18.95938 -16.73066 -16.38865 -16.10374 -15.47010 -15.09606 -14.91326 -14.53527 -14.29094 -14.13770 -13.83467 -12.75031 -12.43228 -12.32599 -12.19300 -12.13950 -11.80452 -11.49820 -11.31013 -11.05673 -10.84848 -10.74288 -10.58772 -10.15187 -9.65385 -9.39146 -8.63879 -8.29261 -7.80361 -6.84715 -5.90466 -3.93531 1.48569 1.91314 3.17006 3.35733 3.39434 3.42944 3.48736 4.20641 4.55635 4.72002 4.90320 4.99277 5.04781 5.21774 5.33776 5.36432 5.42498 5.52933 5.58947 5.65145 5.85769 6.00132 6.04679 6.27674 6.50677 6.65872 6.72122 6.78822 7.29623 7.35428 7.57542 7.68389 7.85035 7.99158 8.05012 8.48442 9.10195 9.68982 11.18600 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.022241 B = 0.007579 C = 0.006265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.614305 B = 3693.410444 C = 4467.908022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.111 3.889 3 N -0.487 5.487 4 C 0.008 3.992 5 C -0.092 4.092 6 C 0.079 3.921 7 C -0.503 4.503 8 H 0.053 0.947 9 C 0.058 3.942 10 N -0.896 5.896 11 Si 0.892 3.108 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.277 1.277 15 C -0.143 4.143 16 C 0.124 3.876 17 C -0.155 4.155 18 C -0.078 4.078 19 C -0.209 4.209 20 C 0.168 3.832 21 F -0.125 7.125 22 H 0.068 0.932 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.164 0.836 28 H 0.027 0.973 29 H 0.031 0.969 30 H 0.261 0.739 31 H 0.115 0.885 32 H 0.125 0.875 33 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.842 -11.183 9.601 16.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.011 4.011 3 N -0.172 5.172 4 C -0.112 4.112 5 C -0.098 4.098 6 C 0.041 3.959 7 C -0.542 4.542 8 H 0.071 0.929 9 C -0.143 4.143 10 N -0.536 5.536 11 Si 0.720 3.280 12 H -0.204 1.204 13 H -0.213 1.213 14 H -0.202 1.202 15 C -0.149 4.149 16 C 0.016 3.984 17 C -0.176 4.176 18 C -0.098 4.098 19 C -0.229 4.229 20 C 0.148 3.852 21 F -0.103 7.103 22 H 0.087 0.913 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.105 0.895 26 H 0.098 0.902 27 H 0.181 0.819 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.133 0.867 32 H 0.143 0.857 33 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.908 -11.323 9.367 16.688 hybrid contribution 1.163 0.158 -0.184 1.188 sum -6.745 -11.165 9.182 15.952 Atomic orbital electron populations 1.22198 0.95205 1.02252 1.03194 1.21598 0.94846 0.81035 1.03580 1.43880 1.57112 1.11509 1.04660 1.21556 1.06631 0.92446 0.90576 1.21206 1.00961 0.96494 0.91139 1.17766 0.95639 0.90649 0.91811 1.21022 0.91067 1.15710 1.26360 0.92869 1.24971 0.98168 0.95417 0.95705 1.69949 1.35388 1.18861 1.29392 0.86658 0.85950 0.77493 0.77937 1.20355 1.21278 1.20235 1.19235 1.07578 0.93408 0.94653 1.17958 1.01483 0.90628 0.88342 1.19836 1.08341 1.00126 0.89303 1.20410 0.98773 0.92000 0.98569 1.20713 1.09267 0.99433 0.93500 1.17209 0.95879 0.80526 0.91568 1.91547 1.85464 1.42043 1.91253 0.91323 0.92061 0.91837 0.89475 0.90242 0.81867 0.95529 0.95087 0.92964 0.86707 0.85661 0.85466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.64 10.24 37.16 0.38 -1.26 16 2 C 0.11 1.25 6.72 -4.04 -0.03 1.22 16 3 N -0.49 -7.95 2.78 -114.42 -0.32 -8.27 16 4 C 0.01 0.16 11.20 -16.71 -0.19 -0.03 16 5 C -0.09 -2.13 5.51 -102.72 -0.57 -2.69 16 6 C 0.08 2.14 5.45 -29.04 -0.16 1.98 16 7 C -0.50 -14.74 9.09 -34.44 -0.31 -15.05 16 8 H 0.05 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.90 -27.37 13.29 55.43 0.74 -26.64 16 11 Si 0.89 22.40 29.54 -169.99 -5.02 17.38 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 15 C -0.14 -3.08 6.33 -105.09 -0.67 -3.74 16 16 C 0.12 2.22 6.81 -84.00 -0.57 1.65 16 17 C -0.15 -2.28 9.98 -39.43 -0.39 -2.68 16 18 C -0.08 -1.10 10.01 -39.56 -0.40 -1.50 16 19 C -0.21 -3.46 10.01 -39.51 -0.40 -3.86 16 20 C 0.17 3.51 7.34 -39.14 -0.29 3.22 16 21 F -0.12 -2.92 16.89 2.25 0.04 -2.89 16 22 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.09 0.85 8.12 -51.93 -0.42 0.43 16 26 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.16 2.74 8.06 -52.48 -0.42 2.32 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.03 0.91 7.81 -51.93 -0.41 0.50 16 30 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.13 1.31 8.06 -52.48 -0.42 0.88 16 33 H 0.13 1.80 8.06 -52.48 -0.42 1.38 16 LS Contribution 292.87 15.07 4.41 4.41 Total: -1.00 -32.78 292.87 -8.00 -40.78 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: -4.17 Total: -3.65 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: -3.68 Total: -21.13 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.42 Total: -34.91 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.04 Total: -2.89 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.78 -8.00 -40.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260079932.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.589 kcal (2) G-P(sol) polarization free energy of solvation -32.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds