Wall clock time and date at job start Mon Mar 30 2020 06:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47108 * 2 1 4 4 C 1.36895 * 125.05886 * 265.02014 * 3 2 1 5 5 C 1.34214 * 109.91377 * 179.97438 * 4 3 2 6 6 C 1.50699 * 126.50029 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47363 * 265.02724 * 6 5 4 8 8 H 1.08001 * 119.99523 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00211 * 179.97438 * 7 6 5 10 10 N 1.31521 * 119.99929 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00265 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46921 * 59.99908 * 11 9 7 13 13 H 1.48496 * 109.47243 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.46991 * 300.00342 * 11 9 7 15 15 C 1.46494 * 106.99720 * 0.02562 * 5 4 3 16 16 C 1.37703 * 125.06764 * 84.97730 * 3 2 1 17 17 C 1.39125 * 133.40899 * 0.06354 * 16 3 2 18 18 C 1.37746 * 119.96256 * 179.97438 * 17 16 3 19 19 C 1.38788 * 120.69727 * 0.03024 * 18 17 16 20 20 C 1.37873 * 120.35045 * 359.97438 * 19 18 17 21 21 F 1.35099 * 120.19406 * 180.02562 * 20 19 18 22 22 H 1.08999 * 109.47203 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47351 * 300.00280 * 1 2 3 24 24 H 1.09003 * 109.47043 * 60.00330 * 1 2 3 25 25 H 1.08994 * 109.47351 * 239.99720 * 2 1 3 26 26 H 1.09003 * 109.47043 * 119.99669 * 2 1 3 27 27 H 1.08003 * 125.04061 * 359.70664 * 4 3 2 28 28 H 1.09003 * 109.47422 * 25.02674 * 6 5 4 29 29 H 1.09000 * 109.47425 * 145.02227 * 6 5 4 30 30 H 0.96997 * 119.99623 * 179.97438 * 10 9 7 31 31 H 1.07998 * 120.01730 * 359.94657 * 17 16 3 32 32 H 1.08003 * 119.65070 * 180.02562 * 18 17 16 33 33 H 1.08003 * 119.82987 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3722 2.0902 -1.1163 5 6 2.7748 3.3219 -0.7671 6 6 3.2456 4.4089 -1.6986 7 6 4.7495 4.3765 -1.7891 8 1 5.3085 3.6425 -1.2278 9 6 5.4118 5.2839 -2.5885 10 7 4.7309 6.1775 -3.2724 11 14 7.2759 5.2433 -2.7012 12 1 7.7116 3.9223 -3.2210 13 1 7.7398 6.3145 -3.6191 14 1 7.8582 5.4611 -1.3527 15 6 2.6710 3.4089 0.6916 16 6 2.1890 2.1600 1.1227 17 6 1.9849 1.9374 2.4808 18 6 2.2537 2.9369 3.3898 19 6 2.7278 4.1707 2.9666 20 6 2.9374 4.4139 1.6258 21 9 3.3994 5.6160 1.2175 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.3370 1.7127 -2.1276 28 1 2.8185 4.2492 -2.6887 29 1 2.9253 5.3785 -1.3170 30 1 5.1969 6.8161 -3.8344 31 1 1.6155 0.9817 2.8221 32 1 2.0939 2.7584 4.4429 33 1 2.9343 4.9443 3.6915 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260079932.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:57 Heat of formation + Delta-G solvation = -14.781739 kcal Electronic energy + Delta-G solvation = -17522.534661 eV Core-core repulsion = 14655.034841 eV Total energy + Delta-G solvation = -2867.499820 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.65542 -42.15535 -37.82153 -35.89128 -34.47331 -31.96464 -30.73184 -30.04801 -28.18790 -25.26003 -24.24870 -23.36343 -22.07305 -20.48283 -18.52743 -17.98768 -17.72189 -16.85015 -16.54648 -16.50952 -16.22799 -15.68061 -15.46781 -14.81172 -14.42762 -14.17379 -13.85746 -13.74213 -13.38891 -13.19770 -12.98087 -12.73890 -12.57690 -12.34989 -12.12358 -12.03916 -11.90128 -11.59614 -11.52822 -10.57847 -10.17763 -9.15131 -8.41068 -8.06809 -6.29322 0.11386 0.60874 1.34883 1.39855 1.47328 1.85191 1.95383 2.41992 2.85353 3.12424 3.52151 3.84313 3.85633 4.00685 4.20593 4.22863 4.27437 4.45030 4.49012 4.69113 4.83315 4.90118 4.96194 5.07636 5.17693 5.28009 5.33140 5.35240 5.48373 5.69323 5.76407 5.83593 5.97116 6.24341 6.33028 6.55864 6.81656 7.37906 8.92373 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.022241 B = 0.007579 C = 0.006265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.614305 B = 3693.410444 C = 4467.908022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.102 3.898 3 N -0.478 5.478 4 C 0.036 3.964 5 C -0.159 4.159 6 C 0.095 3.905 7 C -0.520 4.520 8 H 0.045 0.955 9 C 0.003 3.997 10 N -0.932 5.932 11 Si 0.962 3.038 12 H -0.263 1.263 13 H -0.276 1.276 14 H -0.275 1.275 15 C -0.180 4.180 16 C 0.116 3.884 17 C -0.136 4.136 18 C -0.069 4.069 19 C -0.193 4.193 20 C 0.107 3.893 21 F -0.159 7.159 22 H 0.100 0.900 23 H 0.055 0.945 24 H 0.047 0.953 25 H 0.103 0.897 26 H 0.105 0.895 27 H 0.182 0.818 28 H 0.005 0.995 29 H -0.013 1.013 30 H 0.265 0.735 31 H 0.161 0.839 32 H 0.178 0.822 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.025 -14.562 11.928 20.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.018 4.018 3 N -0.162 5.162 4 C -0.088 4.088 5 C -0.165 4.165 6 C 0.058 3.942 7 C -0.558 4.558 8 H 0.064 0.936 9 C -0.195 4.195 10 N -0.573 5.573 11 Si 0.787 3.213 12 H -0.187 1.187 13 H -0.201 1.201 14 H -0.200 1.200 15 C -0.186 4.186 16 C 0.008 3.992 17 C -0.156 4.156 18 C -0.088 4.088 19 C -0.213 4.213 20 C 0.087 3.913 21 F -0.137 7.137 22 H 0.119 0.881 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.122 0.878 26 H 0.124 0.876 27 H 0.199 0.801 28 H 0.023 0.977 29 H 0.005 0.995 30 H 0.073 0.927 31 H 0.179 0.821 32 H 0.195 0.805 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.114 -14.743 11.716 20.505 hybrid contribution 1.108 1.115 -0.818 1.772 sum -7.006 -13.628 10.898 18.804 Atomic orbital electron populations 1.22161 0.93826 1.04025 1.02202 1.22078 0.95899 0.78046 1.05762 1.44162 1.55831 1.13005 1.03173 1.21669 1.03566 0.91347 0.92194 1.20857 1.06080 0.97424 0.92142 1.17329 0.94772 0.90546 0.91584 1.21309 0.92430 1.15744 1.26289 0.93645 1.25919 1.03636 0.94802 0.95126 1.70083 1.37581 1.19557 1.30042 0.85547 0.79349 0.78375 0.78071 1.18736 1.20137 1.20028 1.19507 1.09387 0.95698 0.94021 1.18325 1.01475 0.89354 0.90055 1.20409 1.05774 1.02000 0.87452 1.21024 0.96519 0.90205 1.01038 1.21130 1.07128 1.01241 0.91754 1.17860 0.99698 0.80073 0.93672 1.91446 1.86512 1.43945 1.91833 0.88099 0.92571 0.93365 0.87828 0.87635 0.80082 0.97690 0.99480 0.92665 0.82116 0.80485 0.83364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 10.24 71.98 0.74 -1.80 16 2 C 0.10 1.86 6.72 86.38 0.58 2.45 16 3 N -0.48 -14.71 2.78 -515.91 -1.43 -16.14 16 4 C 0.04 1.38 11.20 82.98 0.93 2.31 16 5 C -0.16 -7.79 5.51 -18.63 -0.10 -7.89 16 6 C 0.10 5.63 5.45 29.10 0.16 5.79 16 7 C -0.52 -32.28 9.09 25.60 0.23 -32.05 16 8 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 9 C 0.00 0.16 5.46 84.65 0.46 0.62 16 10 N -0.93 -59.72 13.29 21.45 0.28 -59.43 16 11 Si 0.96 47.21 29.54 68.60 2.03 49.23 16 12 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 13 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 14 H -0.27 -13.31 7.11 99.48 0.71 -12.60 16 15 C -0.18 -8.08 6.33 -20.17 -0.13 -8.20 16 16 C 0.12 3.96 6.81 39.02 0.27 4.23 16 17 C -0.14 -3.38 9.98 22.37 0.22 -3.16 16 18 C -0.07 -1.63 10.01 22.28 0.22 -1.41 16 19 C -0.19 -6.12 10.01 22.31 0.22 -5.90 16 20 C 0.11 4.66 7.34 22.56 0.17 4.83 16 21 F -0.16 -8.14 16.89 44.97 0.76 -7.38 16 22 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.10 1.60 8.12 -2.39 -0.02 1.58 16 26 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.18 6.09 8.06 -2.91 -0.02 6.07 16 28 H 0.00 0.29 8.14 -2.39 -0.02 0.28 16 29 H -0.01 -0.86 7.81 -2.39 -0.02 -0.88 16 30 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 31 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 32 H 0.18 2.44 8.06 -2.91 -0.02 2.42 16 33 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -78.99 292.87 6.71 -72.28 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: 1.10 Total: 1.62 kcal Atomic # 6 Polarization: -44.16 SS G_CDS: 3.97 Total: -40.19 kcal Atomic # 7 Polarization: -74.42 SS G_CDS: -1.15 Total: -75.57 kcal Atomic # 9 Polarization: -8.14 SS G_CDS: 0.76 Total: -7.38 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.23 kcal Total: -78.99 6.71 -72.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260079932.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.503 kcal (2) G-P(sol) polarization free energy of solvation -78.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds