Wall clock time and date at job start Mon Mar 30 2020 05:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36001 * 116.99638 * 2 1 4 4 C 1.38167 * 120.00080 * 0.26109 * 3 2 1 5 5 C 1.39751 * 119.84531 * 180.25144 * 4 3 2 6 6 C 1.43202 * 120.07720 * 179.76485 * 5 4 3 7 7 N 5.84112 * 81.26034 * 0.02562 * 2 1 3 8 8 C 1.39728 * 119.84659 * 359.74134 * 5 4 3 9 9 C 1.37824 * 119.99342 * 0.02562 * 8 5 4 10 10 C 1.50707 * 119.91886 * 180.02562 * 9 8 5 11 11 C 1.53004 * 109.46398 * 264.97140 * 10 9 8 12 12 C 1.50709 * 109.46915 * 180.02562 * 11 10 9 13 13 H 1.08006 * 119.99237 * 0.02562 * 12 11 10 14 14 C 1.37871 * 119.99997 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99901 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99661 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47344 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47180 * 120.00403 * 16 14 12 19 19 H 1.48500 * 109.47058 * 240.00089 * 16 14 12 20 20 C 1.38795 * 120.15871 * 359.97438 * 9 8 5 21 21 O 1.35843 * 119.92274 * 179.97438 * 20 9 8 22 22 H 1.08998 * 109.47417 * 60.00031 * 1 2 3 23 23 H 1.08999 * 109.46473 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46896 * 299.99233 * 1 2 3 25 25 H 1.08001 * 120.07861 * 0.02562 * 4 3 2 26 26 H 1.07994 * 120.00152 * 180.02562 * 8 5 4 27 27 H 1.09000 * 109.47461 * 24.96648 * 10 9 8 28 28 H 1.08994 * 109.46951 * 144.97454 * 10 9 8 29 29 H 1.08993 * 109.47180 * 299.99584 * 11 10 9 30 30 H 1.08994 * 109.47313 * 60.00536 * 11 10 9 31 31 H 0.97006 * 119.99899 * 179.97438 * 15 14 12 32 32 H 0.96700 * 114.00288 * 90.00277 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2938 2.3705 0.0055 5 6 1.9316 3.6141 0.0001 6 6 1.1564 4.8181 0.0006 7 7 0.5415 5.7733 0.0026 8 6 3.3273 3.6798 -0.0052 9 6 4.0716 2.5198 -0.0058 10 6 5.5769 2.5926 -0.0110 11 6 6.0874 2.4886 -1.4496 12 6 7.5928 2.5607 -1.4548 13 1 8.1314 2.6695 -0.5250 14 6 8.2823 2.4869 -2.6465 15 7 7.6264 2.3539 -3.7785 16 14 10.1481 2.5771 -2.6530 17 1 10.6414 2.7260 -1.2603 18 1 10.7019 1.3320 -3.2432 19 1 10.5844 3.7443 -3.4606 20 6 3.4383 1.2848 -0.0005 21 8 4.1766 0.1446 -0.0016 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 0.2152 2.3154 0.0101 26 1 3.8227 4.6394 -0.0090 27 1 5.8963 3.5415 0.4201 28 1 5.9825 1.7707 0.5788 29 1 5.7681 1.5398 -1.8807 30 1 5.6819 3.3105 -2.0394 31 1 8.1115 2.3023 -4.6170 32 1 4.3944 -0.1839 0.8815 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260085853.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:12 Heat of formation + Delta-G solvation = -59.529245 kcal Electronic energy + Delta-G solvation = -16968.173672 eV Core-core repulsion = 14086.360666 eV Total energy + Delta-G solvation = -2881.813007 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.57937 -39.12236 -38.34990 -36.98151 -35.70596 -33.76395 -31.07162 -30.57851 -28.27150 -26.83806 -24.67303 -23.63317 -22.10592 -19.66586 -19.47887 -18.38699 -17.86257 -17.47601 -16.92804 -16.46443 -16.12558 -15.26818 -15.01108 -14.86032 -14.60487 -14.50664 -14.30042 -14.08393 -13.48884 -13.33680 -13.07980 -12.84151 -12.76998 -12.42155 -12.36036 -12.00688 -11.71215 -11.55442 -11.44799 -11.07491 -10.50647 -9.64953 -9.19406 -8.14248 -6.25179 -0.38172 0.28505 1.44062 1.44449 1.52046 1.57419 1.77896 2.27189 2.45582 2.72221 2.74537 3.19603 3.24592 3.76966 4.03844 4.09824 4.34722 4.40831 4.45845 4.58610 4.69512 4.79533 4.91059 4.93424 5.13814 5.21403 5.34265 5.52454 5.58624 5.83560 5.92251 6.28259 6.28786 6.34828 6.92936 6.94911 7.44048 8.97798 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.024272 B = 0.005499 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.328192 B = 5090.764424 C = 5859.100746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.321 6.321 3 C 0.099 3.901 4 C -0.145 4.145 5 C -0.004 4.004 6 C 0.285 3.715 7 N -0.452 5.452 8 C -0.088 4.088 9 C -0.071 4.071 10 C -0.059 4.059 11 C 0.037 3.963 12 C -0.537 4.537 13 H 0.066 0.934 14 C -0.002 4.002 15 N -0.936 5.936 16 Si 0.964 3.036 17 H -0.258 1.258 18 H -0.281 1.281 19 H -0.281 1.281 20 C 0.103 3.897 21 O -0.493 6.493 22 H 0.063 0.937 23 H 0.120 0.880 24 H 0.074 0.926 25 H 0.168 0.832 26 H 0.144 0.856 27 H 0.075 0.925 28 H 0.074 0.926 29 H -0.010 1.010 30 H -0.011 1.011 31 H 0.261 0.739 32 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.315 -4.009 11.131 17.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.235 6.235 3 C 0.053 3.947 4 C -0.166 4.166 5 C -0.008 4.008 6 C -0.030 4.030 7 N -0.128 5.128 8 C -0.108 4.108 9 C -0.072 4.072 10 C -0.096 4.096 11 C 0.000 4.000 12 C -0.575 4.575 13 H 0.084 0.916 14 C -0.200 4.200 15 N -0.576 5.576 16 Si 0.788 3.212 17 H -0.181 1.181 18 H -0.207 1.207 19 H -0.207 1.207 20 C 0.056 3.944 21 O -0.305 6.305 22 H 0.082 0.918 23 H 0.138 0.862 24 H 0.093 0.907 25 H 0.185 0.815 26 H 0.162 0.838 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.009 0.991 30 H 0.007 0.993 31 H 0.070 0.930 32 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -14.211 -2.701 10.370 17.798 hybrid contribution 1.048 -0.294 -0.112 1.095 sum -13.163 -2.994 10.257 16.954 Atomic orbital electron populations 1.23462 0.76244 1.05938 1.02607 1.86178 1.23518 1.25199 1.88575 1.19109 0.91025 0.85515 0.99071 1.21182 1.01367 0.89079 1.04971 1.15619 0.90999 0.86910 1.07269 1.25553 0.92438 0.92462 0.92506 1.81248 1.10097 1.11161 1.10320 1.21006 0.91410 0.98956 0.99469 1.20207 0.97294 0.91566 0.98128 1.20471 0.88145 1.02539 0.98465 1.18901 0.94641 0.94803 0.91701 1.21746 0.93157 1.49338 0.93213 0.91552 1.25974 1.03710 0.94946 0.95320 1.70129 1.37493 1.51585 0.98441 0.85420 0.79493 0.77526 0.78724 1.18126 1.20729 1.20703 1.18005 0.86784 0.86485 1.03140 1.84874 1.72161 1.38782 1.34661 0.91793 0.86183 0.90741 0.81461 0.83805 0.90636 0.90775 0.99144 0.99297 0.92980 0.73645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.81 113.37 1.11 1.26 16 2 O -0.32 -7.49 10.28 -79.54 -0.82 -8.31 16 3 C 0.10 2.55 6.69 22.53 0.15 2.70 16 4 C -0.15 -3.14 8.74 22.62 0.20 -2.94 16 5 C 0.00 -0.11 5.74 -21.31 -0.12 -0.23 16 6 C 0.29 7.37 15.33 88.33 1.35 8.72 16 7 N -0.45 -13.28 18.54 19.00 0.35 -12.93 16 8 C -0.09 -2.48 9.37 22.53 0.21 -2.27 16 9 C -0.07 -2.31 5.14 -19.83 -0.10 -2.41 16 10 C -0.06 -2.25 5.00 29.85 0.15 -2.10 16 11 C 0.04 1.90 4.96 29.85 0.15 2.05 16 12 C -0.54 -29.92 9.11 25.60 0.23 -29.68 16 13 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 14 C 0.00 -0.13 5.46 84.65 0.46 0.34 16 15 N -0.94 -57.60 13.29 21.44 0.28 -57.31 16 16 Si 0.96 44.02 29.54 68.60 2.03 46.05 16 17 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 20 C 0.10 3.16 6.69 22.68 0.15 3.31 16 21 O -0.49 -15.60 12.39 -77.75 -0.96 -16.56 16 22 H 0.06 0.75 7.67 -2.39 -0.02 0.73 16 23 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.07 0.69 7.65 -2.39 -0.02 0.67 16 25 H 0.17 2.51 6.28 -2.91 -0.02 2.49 16 26 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 27 H 0.08 2.67 8.05 -2.39 -0.02 2.65 16 28 H 0.07 2.67 7.68 -2.39 -0.02 2.65 16 29 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 30 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 31 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 32 H 0.40 8.43 9.06 -74.06 -0.67 7.76 16 Total: -1.00 -71.42 292.30 5.31 -66.11 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: 0.48 Total: 4.21 kcal Atomic # 6 Polarization: -25.20 SS G_CDS: 3.95 Total: -21.26 kcal Atomic # 7 Polarization: -70.88 SS G_CDS: 0.64 Total: -70.24 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -1.78 Total: -24.87 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -71.42 5.31 -66.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260085853.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.583 kcal (2) G-P(sol) polarization free energy of solvation -71.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds