Wall clock time and date at job start Mon Mar 30 2020 06:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00377 * 2 1 4 4 H 1.48499 * 109.47519 * 240.00490 * 3 2 1 5 5 H 1.48496 * 109.47076 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46844 * 120.00445 * 3 2 1 7 7 C 1.37884 * 119.99646 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99868 * 183.74028 * 7 2 1 9 9 C 1.50699 * 120.00029 * 3.74952 * 7 2 1 10 10 H 1.09003 * 109.47304 * 358.28548 * 9 7 2 11 11 C 1.50702 * 109.46873 * 238.28368 * 9 7 2 12 12 C 1.38166 * 120.02842 * 264.99837 * 11 9 7 13 13 C 1.38243 * 120.05698 * 180.02562 * 12 11 9 14 14 C 1.38285 * 120.11083 * 359.97438 * 13 12 11 15 15 C 1.38122 * 120.05430 * 359.97438 * 14 13 12 16 16 C 1.38705 * 120.02956 * 85.25452 * 11 9 7 17 17 O 1.35902 * 120.05676 * 0.02562 * 16 11 9 18 18 N 1.46900 * 109.47291 * 118.28327 * 9 7 2 19 19 C 1.48535 * 111.00342 * 182.47382 * 18 9 7 20 20 C 1.54939 * 103.22669 * 159.71989 * 19 18 9 21 21 C 1.54596 * 102.92253 * 322.58767 * 20 19 18 22 22 C 1.47897 * 111.00073 * 299.87507 * 18 9 7 23 23 H 0.97000 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.08007 * 119.96909 * 0.02562 * 12 11 9 25 25 H 1.07996 * 119.94327 * 180.02562 * 13 12 11 26 26 H 1.07995 * 119.97050 * 180.02562 * 14 13 12 27 27 H 1.08008 * 120.02681 * 180.02562 * 15 14 13 28 28 H 0.96703 * 113.99969 * 270.25254 * 17 16 11 29 29 H 1.09000 * 110.66853 * 278.15934 * 19 18 9 30 30 H 1.09007 * 110.66034 * 41.28899 * 19 18 9 31 31 H 1.09004 * 110.72057 * 204.22741 * 20 19 18 32 32 H 1.08996 * 110.72130 * 80.95084 * 20 19 18 33 33 H 1.09001 * 110.30915 * 263.04034 * 21 20 19 34 34 H 1.09005 * 110.30536 * 140.87336 * 21 20 19 35 35 H 1.09002 * 109.91957 * 333.50612 * 22 18 9 36 36 H 1.09000 * 109.92301 * 94.80247 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6961 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0828 -1.1952 0.0605 9 6 1.2533 -2.4978 -0.0865 10 1 0.1819 -2.2989 -0.1099 11 6 1.5807 -3.3462 1.1152 12 6 2.5801 -4.2971 1.0386 13 6 2.8806 -5.0762 2.1405 14 6 2.1824 -4.9056 3.3218 15 6 1.1831 -3.9556 3.4038 16 6 0.8753 -3.1769 2.2975 17 8 -0.1121 -2.2462 2.3736 18 7 1.6460 -3.2095 -1.3101 19 6 0.8810 -4.4739 -1.4593 20 6 1.0135 -4.7922 -2.9698 21 6 0.9393 -3.3942 -3.6256 22 6 1.3364 -2.4065 -2.5128 23 1 -0.4849 0.8401 0.0004 24 1 3.1272 -4.4319 0.1171 25 1 3.6624 -5.8186 2.0787 26 1 2.4192 -5.5151 4.1813 27 1 0.6383 -3.8225 4.3269 28 1 0.1916 -1.3729 2.6569 29 1 1.3269 -5.2665 -0.8585 30 1 -0.1642 -4.3254 -1.1876 31 1 0.1880 -5.4201 -3.3055 32 1 1.9714 -5.2672 -3.1813 33 1 -0.0752 -3.1903 -3.9681 34 1 1.6406 -3.3289 -4.4575 35 1 0.5079 -1.7295 -2.3043 36 1 2.2158 -1.8387 -2.8169 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260097739.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:32 Heat of formation + Delta-G solvation = -12.919957 kcal Electronic energy + Delta-G solvation = -18595.705060 eV Core-core repulsion = 15851.746278 eV Total energy + Delta-G solvation = -2743.958782 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.17763 -37.56347 -35.57124 -33.52517 -31.55108 -29.39264 -28.72739 -27.95426 -26.09822 -23.16011 -21.67617 -20.86215 -19.97955 -19.34094 -17.31745 -16.43820 -15.62150 -15.33073 -14.85763 -14.52142 -14.28054 -13.81214 -13.09960 -12.99190 -12.78057 -12.45471 -11.73203 -11.64077 -11.36906 -11.31569 -11.04865 -10.89434 -10.77414 -10.58121 -10.53792 -10.34094 -9.92201 -9.71247 -9.49622 -9.22421 -8.64892 -7.98422 -7.59711 -7.16239 -6.10787 -4.19095 2.08944 2.20446 3.24261 3.29818 3.33680 4.29975 4.49271 4.99507 5.25368 5.29286 5.43623 5.46325 5.59633 5.62776 5.78170 5.90962 6.09868 6.15578 6.30914 6.37021 6.40144 6.42831 6.56703 6.69540 6.73080 6.81555 6.99727 7.03312 7.11654 7.27118 7.38312 7.59691 7.65990 7.76654 7.92477 8.29013 8.54139 8.70589 8.97518 9.44560 10.90994 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.014728 B = 0.012226 C = 0.007799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.728148 B = 2289.671467 C = 3589.176107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.070 3.930 3 Si 0.892 3.108 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.496 4.496 8 H 0.058 0.942 9 C 0.219 3.781 10 H 0.067 0.933 11 C -0.054 4.054 12 C -0.103 4.103 13 C -0.143 4.143 14 C -0.137 4.137 15 C -0.159 4.159 16 C 0.107 3.893 17 O -0.486 6.486 18 N -0.515 5.515 19 C 0.028 3.972 20 C -0.121 4.121 21 C -0.134 4.134 22 C 0.061 3.939 23 H 0.264 0.736 24 H 0.129 0.871 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.113 0.887 28 H 0.388 0.612 29 H 0.069 0.931 30 H 0.032 0.968 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.882 -6.582 0.200 6.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.134 4.134 3 Si 0.719 3.281 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.535 4.535 8 H 0.076 0.924 9 C 0.113 3.887 10 H 0.085 0.915 11 C -0.056 4.056 12 C -0.121 4.121 13 C -0.162 4.162 14 C -0.155 4.155 15 C -0.177 4.177 16 C 0.062 3.938 17 O -0.296 6.296 18 N -0.241 5.241 19 C -0.101 4.101 20 C -0.159 4.159 21 C -0.172 4.172 22 C -0.067 4.067 23 H 0.074 0.926 24 H 0.147 0.853 25 H 0.127 0.873 26 H 0.127 0.873 27 H 0.131 0.869 28 H 0.244 0.756 29 H 0.088 0.912 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.895 -6.989 0.066 7.242 hybrid contribution -0.074 1.554 0.233 1.573 sum 1.821 -5.436 0.299 5.740 Atomic orbital electron populations 1.69940 1.05641 1.26931 1.48943 1.25028 0.94893 0.99158 0.94353 0.86662 0.79668 0.82857 0.78915 1.20060 1.21289 1.20197 1.20831 0.93255 0.88751 1.50662 0.92423 1.18662 0.98288 0.89504 0.82230 0.91523 1.20912 0.93077 0.94345 0.97240 1.21059 0.97568 0.95187 0.98324 1.21038 1.00542 1.00774 0.93798 1.20702 0.97617 0.99468 0.97694 1.21268 0.99254 0.99347 0.97880 1.18378 0.90020 0.93032 0.92418 1.84700 1.32053 1.22153 1.90701 1.64982 1.52585 1.03263 1.03236 1.23221 0.96536 0.95311 0.94982 1.22440 1.00765 0.96638 0.96075 1.22476 1.00386 0.95737 0.98622 1.22408 1.00307 0.94983 0.89041 0.92605 0.85298 0.87311 0.87278 0.86894 0.75613 0.91237 0.95006 0.92500 0.91634 0.92600 0.92258 0.92919 0.91642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.27 12.61 55.43 0.70 -22.58 16 2 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.89 20.28 29.54 -169.99 -5.02 15.26 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.50 -12.86 7.66 -34.44 -0.26 -13.12 16 8 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 9 C 0.22 5.30 1.41 -70.02 -0.10 5.20 16 10 H 0.07 1.86 6.32 -51.93 -0.33 1.53 16 11 C -0.05 -1.22 4.49 -104.48 -0.47 -1.69 16 12 C -0.10 -2.06 7.86 -39.61 -0.31 -2.38 16 13 C -0.14 -2.50 10.04 -39.56 -0.40 -2.89 16 14 C -0.14 -2.31 10.04 -39.61 -0.40 -2.71 16 15 C -0.16 -2.96 9.99 -39.43 -0.39 -3.35 16 16 C 0.11 2.31 6.68 -39.22 -0.26 2.05 16 17 O -0.49 -10.86 12.64 -19.43 -0.25 -11.11 16 18 N -0.52 -11.24 4.09 -225.27 -0.92 -12.16 16 19 C 0.03 0.54 5.60 -1.90 -0.01 0.52 16 20 C -0.12 -1.95 7.06 -24.87 -0.18 -2.13 16 21 C -0.13 -2.27 6.93 -25.37 -0.18 -2.45 16 22 C 0.06 1.28 5.85 -2.76 -0.02 1.27 16 23 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 24 H 0.13 2.57 6.97 -52.48 -0.37 2.21 16 25 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 26 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 27 H 0.11 1.86 8.06 -52.48 -0.42 1.44 16 28 H 0.39 8.03 9.06 45.56 0.41 8.45 16 29 H 0.07 1.29 6.63 -51.93 -0.34 0.95 16 30 H 0.03 0.66 7.97 -51.92 -0.41 0.25 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.05 1.26 7.71 -51.93 -0.40 0.86 16 36 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 294.91 15.07 4.44 4.44 Total: -1.00 -27.13 294.91 -8.48 -35.61 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -4.37 Total: 10.50 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -3.07 Total: -19.97 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: -0.22 Total: -34.74 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: -0.25 Total: -11.11 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -27.13 -8.48 -35.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260097739.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.691 kcal (2) G-P(sol) polarization free energy of solvation -27.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds