Wall clock time and date at job start Mon Mar 30 2020 06:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00377 * 2 1 4 4 H 1.48499 * 109.47519 * 240.00490 * 3 2 1 5 5 H 1.48496 * 109.47076 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46844 * 120.00445 * 3 2 1 7 7 C 1.37884 * 119.99646 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99868 * 183.74028 * 7 2 1 9 9 C 1.50699 * 120.00029 * 3.74952 * 7 2 1 10 10 H 1.09003 * 109.47304 * 358.28548 * 9 7 2 11 11 C 1.50702 * 109.46873 * 238.28368 * 9 7 2 12 12 C 1.38166 * 120.02842 * 264.99837 * 11 9 7 13 13 C 1.38243 * 120.05698 * 180.02562 * 12 11 9 14 14 C 1.38285 * 120.11083 * 359.97438 * 13 12 11 15 15 C 1.38122 * 120.05430 * 359.97438 * 14 13 12 16 16 C 1.38705 * 120.02956 * 85.25452 * 11 9 7 17 17 O 1.35902 * 120.05676 * 0.02562 * 16 11 9 18 18 N 1.46900 * 109.47291 * 118.28327 * 9 7 2 19 19 C 1.48535 * 111.00342 * 182.47382 * 18 9 7 20 20 C 1.54939 * 103.22669 * 159.71989 * 19 18 9 21 21 C 1.54596 * 102.92253 * 322.58767 * 20 19 18 22 22 C 1.47897 * 111.00073 * 299.87507 * 18 9 7 23 23 H 0.97000 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.08007 * 119.96909 * 0.02562 * 12 11 9 25 25 H 1.07996 * 119.94327 * 180.02562 * 13 12 11 26 26 H 1.07995 * 119.97050 * 180.02562 * 14 13 12 27 27 H 1.08008 * 120.02681 * 180.02562 * 15 14 13 28 28 H 0.96703 * 113.99969 * 270.25254 * 17 16 11 29 29 H 1.09000 * 110.66853 * 278.15934 * 19 18 9 30 30 H 1.09007 * 110.66034 * 41.28899 * 19 18 9 31 31 H 1.09004 * 110.72057 * 204.22741 * 20 19 18 32 32 H 1.08996 * 110.72130 * 80.95084 * 20 19 18 33 33 H 1.09001 * 110.30915 * 263.04034 * 21 20 19 34 34 H 1.09005 * 110.30536 * 140.87336 * 21 20 19 35 35 H 1.09002 * 109.91957 * 333.50612 * 22 18 9 36 36 H 1.09000 * 109.92301 * 94.80247 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6961 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0828 -1.1952 0.0605 9 6 1.2533 -2.4978 -0.0865 10 1 0.1819 -2.2989 -0.1099 11 6 1.5807 -3.3462 1.1152 12 6 2.5801 -4.2971 1.0386 13 6 2.8806 -5.0762 2.1405 14 6 2.1824 -4.9056 3.3218 15 6 1.1831 -3.9556 3.4038 16 6 0.8753 -3.1769 2.2975 17 8 -0.1121 -2.2462 2.3736 18 7 1.6460 -3.2095 -1.3101 19 6 0.8810 -4.4739 -1.4593 20 6 1.0135 -4.7922 -2.9698 21 6 0.9393 -3.3942 -3.6256 22 6 1.3364 -2.4065 -2.5128 23 1 -0.4849 0.8401 0.0004 24 1 3.1272 -4.4319 0.1171 25 1 3.6624 -5.8186 2.0787 26 1 2.4192 -5.5151 4.1813 27 1 0.6383 -3.8225 4.3269 28 1 0.1916 -1.3729 2.6569 29 1 1.3269 -5.2665 -0.8585 30 1 -0.1642 -4.3254 -1.1876 31 1 0.1880 -5.4201 -3.3055 32 1 1.9714 -5.2672 -3.1813 33 1 -0.0752 -3.1903 -3.9681 34 1 1.6406 -3.3289 -4.4575 35 1 0.5079 -1.7295 -2.3043 36 1 2.2158 -1.8387 -2.8169 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260097739.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:32 Heat of formation + Delta-G solvation = -30.300609 kcal Electronic energy + Delta-G solvation = -18596.458741 eV Core-core repulsion = 15851.746278 eV Total energy + Delta-G solvation = -2744.712464 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.77477 -39.15418 -37.18319 -35.33160 -33.31200 -30.91923 -30.26115 -29.54379 -27.93606 -24.91885 -23.21022 -22.41413 -21.44719 -21.06333 -18.93634 -18.42489 -17.14613 -17.01442 -16.48685 -16.16697 -15.85108 -15.40611 -14.79607 -14.58967 -14.38908 -14.10687 -13.36240 -13.29600 -12.93924 -12.90330 -12.84580 -12.52201 -12.40078 -12.26271 -12.03620 -11.87032 -11.53580 -11.37137 -11.31714 -10.93815 -10.58868 -9.50049 -9.19139 -8.97829 -8.07936 -6.23465 0.56898 0.69812 1.39321 1.41647 1.48552 2.39513 2.92779 3.13726 3.58143 3.72618 3.94847 4.01338 4.21802 4.26361 4.35357 4.49002 4.54549 4.75030 4.79562 4.89117 4.97094 4.98971 5.08536 5.18462 5.21462 5.25676 5.34653 5.45115 5.50195 5.65512 5.70583 5.77655 5.91610 6.07118 6.24841 6.42083 6.74226 6.95703 7.05737 7.42902 8.92070 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.014728 B = 0.012226 C = 0.007799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.728148 B = 2289.671467 C = 3589.176107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.034 3.966 3 Si 0.946 3.054 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.507 4.507 8 H 0.042 0.958 9 C 0.231 3.769 10 H 0.020 0.980 11 C -0.086 4.086 12 C -0.111 4.111 13 C -0.133 4.133 14 C -0.123 4.123 15 C -0.158 4.158 16 C 0.074 3.926 17 O -0.502 6.502 18 N -0.518 5.518 19 C 0.028 3.972 20 C -0.109 4.109 21 C -0.126 4.126 22 C 0.060 3.940 23 H 0.262 0.738 24 H 0.126 0.874 25 H 0.148 0.852 26 H 0.153 0.847 27 H 0.134 0.866 28 H 0.387 0.613 29 H 0.078 0.922 30 H 0.007 0.993 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.012 0.988 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.379 -8.646 0.564 9.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.167 4.167 3 Si 0.772 3.228 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.125 3.875 10 H 0.037 0.963 11 C -0.087 4.087 12 C -0.129 4.129 13 C -0.151 4.151 14 C -0.141 4.141 15 C -0.177 4.177 16 C 0.029 3.971 17 O -0.312 6.312 18 N -0.243 5.243 19 C -0.101 4.101 20 C -0.147 4.147 21 C -0.164 4.164 22 C -0.069 4.069 23 H 0.071 0.929 24 H 0.143 0.857 25 H 0.165 0.835 26 H 0.171 0.829 27 H 0.152 0.848 28 H 0.242 0.758 29 H 0.096 0.904 30 H 0.025 0.975 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.030 0.970 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.400 -9.068 0.427 9.694 hybrid contribution -0.513 2.101 0.177 2.170 sum 2.888 -6.966 0.603 7.565 Atomic orbital electron populations 1.70074 1.06766 1.27229 1.49920 1.25576 0.95445 1.01628 0.94095 0.85803 0.78544 0.79658 0.78764 1.20099 1.20937 1.19760 1.20912 0.92453 0.90263 1.50917 0.93993 1.18290 0.95137 0.89892 0.84220 0.96261 1.20871 0.95089 0.95941 0.96807 1.21096 0.96974 0.95350 0.99489 1.21440 1.00748 1.00213 0.92726 1.21201 0.95735 0.98350 0.98831 1.21537 0.99706 0.98867 0.97545 1.18751 0.90797 0.93938 0.93584 1.84684 1.33016 1.22489 1.90962 1.64907 1.52764 1.04003 1.02587 1.23257 0.94725 0.94193 0.97876 1.22436 1.02878 0.96410 0.92949 1.22433 1.01371 0.94904 0.97695 1.22377 0.98269 0.95608 0.90639 0.92863 0.85651 0.83467 0.82925 0.84801 0.75754 0.90363 0.97494 0.89882 0.89762 0.91991 0.89694 0.96993 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.42 12.61 21.45 0.27 -50.15 16 2 C 0.03 1.83 5.46 84.66 0.46 2.29 16 3 Si 0.95 42.83 29.54 68.60 2.03 44.86 16 4 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.51 -27.47 7.66 25.60 0.20 -27.28 16 8 H 0.04 2.35 7.82 -2.91 -0.02 2.33 16 9 C 0.23 11.76 1.41 43.42 0.06 11.82 16 10 H 0.02 1.17 6.32 -2.39 -0.02 1.15 16 11 C -0.09 -3.92 4.49 -19.77 -0.09 -4.01 16 12 C -0.11 -4.32 7.86 22.25 0.17 -4.15 16 13 C -0.13 -4.17 10.04 22.28 0.22 -3.95 16 14 C -0.12 -3.68 10.04 22.25 0.22 -3.46 16 15 C -0.16 -5.60 9.99 22.36 0.22 -5.37 16 16 C 0.07 3.27 6.68 22.50 0.15 3.42 16 17 O -0.50 -23.56 12.64 -92.45 -1.17 -24.73 16 18 N -0.52 -23.21 4.09 -866.62 -3.54 -26.75 16 19 C 0.03 1.06 5.60 86.65 0.49 1.55 16 20 C -0.11 -3.26 7.06 31.80 0.22 -3.03 16 21 C -0.13 -4.11 6.93 31.47 0.22 -3.89 16 22 C 0.06 2.60 5.85 86.45 0.51 3.11 16 23 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 24 H 0.13 4.89 6.97 -2.91 -0.02 4.87 16 25 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 26 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 27 H 0.13 4.10 8.06 -2.91 -0.02 4.07 16 28 H 0.39 17.15 9.06 -74.05 -0.67 16.48 16 29 H 0.08 2.84 6.63 -2.39 -0.02 2.83 16 30 H 0.01 0.29 7.97 -2.38 -0.02 0.27 16 31 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.06 1.94 8.14 -2.39 -0.02 1.93 16 34 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 35 H 0.01 0.60 7.71 -2.39 -0.02 0.58 16 36 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -62.10 294.91 1.05 -61.05 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: 0.40 Total: 28.68 kcal Atomic # 6 Polarization: -36.02 SS G_CDS: 3.06 Total: -32.96 kcal Atomic # 7 Polarization: -73.63 SS G_CDS: -3.27 Total: -76.90 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -1.17 Total: -24.73 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -62.10 1.05 -61.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260097739.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.751 kcal (2) G-P(sol) polarization free energy of solvation -62.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds