Wall clock time and date at job start Mon Mar 30 2020 06:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86791 * 120.00366 * 2 1 4 4 H 1.48500 * 109.47175 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47142 * 300.00034 * 3 2 1 6 6 H 1.48496 * 109.47260 * 60.00086 * 3 2 1 7 7 C 1.37883 * 119.99285 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99568 * 174.46238 * 7 2 1 9 9 C 1.50690 * 120.00404 * 354.46273 * 7 2 1 10 10 H 1.08998 * 109.47375 * 174.49123 * 9 7 2 11 11 C 1.50699 * 109.47111 * 294.48880 * 9 7 2 12 12 C 1.38165 * 120.02864 * 94.67683 * 11 9 7 13 13 C 1.38247 * 120.05534 * 179.97438 * 12 11 9 14 14 C 1.38287 * 120.11400 * 0.02562 * 13 12 11 15 15 C 1.38125 * 120.05219 * 0.02562 * 14 13 12 16 16 C 1.38712 * 120.02759 * 274.39984 * 11 9 7 17 17 O 1.35895 * 120.05674 * 359.97438 * 16 11 9 18 18 N 1.46901 * 109.47548 * 54.48580 * 9 7 2 19 19 C 1.48541 * 110.99381 * 58.22499 * 18 9 7 20 20 C 1.54942 * 103.22262 * 159.72368 * 19 18 9 21 21 C 1.54594 * 102.92408 * 322.58651 * 20 19 18 22 22 C 1.47902 * 111.00546 * 175.61926 * 18 9 7 23 23 H 0.97001 * 119.99272 * 359.97438 * 1 2 3 24 24 H 1.08002 * 119.97286 * 359.97438 * 12 11 9 25 25 H 1.08007 * 119.94591 * 179.97438 * 13 12 11 26 26 H 1.08000 * 119.97522 * 179.97438 * 14 13 12 27 27 H 1.08006 * 120.02669 * 179.97438 * 15 14 13 28 28 H 0.96706 * 113.99992 * 90.00099 * 17 16 11 29 29 H 1.08995 * 110.66669 * 278.15545 * 19 18 9 30 30 H 1.08997 * 110.66703 * 41.29205 * 19 18 9 31 31 H 1.09004 * 110.72118 * 204.22661 * 20 19 18 32 32 H 1.08999 * 110.72479 * 80.94732 * 20 19 18 33 33 H 1.08999 * 110.30573 * 263.04668 * 21 20 19 34 34 H 1.08998 * 110.30939 * 140.87496 * 21 20 19 35 35 H 1.08995 * 109.91214 * 333.51717 * 22 18 9 36 36 H 1.09003 * 109.90872 * 94.80284 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0807 -1.1965 -0.0897 9 6 1.2562 -2.4961 0.1270 10 1 1.9513 -3.3275 0.0102 11 6 0.6060 -2.5719 1.4844 12 6 -0.7075 -2.1746 1.6451 13 6 -1.3047 -2.2444 2.8899 14 6 -0.5894 -2.7114 3.9774 15 6 0.7243 -3.1088 3.8222 16 6 1.3239 -3.0461 2.5725 17 8 2.6140 -3.4433 2.4158 18 7 0.2237 -2.5708 -0.9152 19 6 0.8246 -2.4562 -2.2688 20 6 -0.2602 -3.0671 -3.1911 21 6 -0.8154 -4.2357 -2.3448 22 6 -0.4628 -3.8806 -0.8885 23 1 -0.4849 0.8401 0.0004 24 1 -1.2682 -1.8091 0.7974 25 1 -2.3315 -1.9329 3.0136 26 1 -1.0580 -2.7646 4.9490 27 1 1.2827 -3.4730 4.6719 28 1 3.2617 -2.7372 2.5474 29 1 1.0023 -1.4114 -2.5236 30 1 1.7490 -3.0306 -2.3293 31 1 0.1833 -3.4371 -4.1156 32 1 -1.0424 -2.3380 -3.4021 33 1 -0.3368 -5.1718 -2.6324 34 1 -1.8962 -4.3098 -2.4651 35 1 0.2000 -4.6387 -0.4714 36 1 -1.3728 -3.8106 -0.2925 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260097744.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:35 Heat of formation + Delta-G solvation = -4.206758 kcal Electronic energy + Delta-G solvation = -18820.644094 eV Core-core repulsion = 16077.063145 eV Total energy + Delta-G solvation = -2743.580949 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.06766 -37.48550 -35.59180 -33.52535 -31.13234 -29.20659 -28.60027 -27.86120 -26.14104 -22.96436 -21.51699 -20.67852 -19.97507 -19.37415 -17.34167 -16.32991 -15.45354 -15.25640 -14.68833 -14.45954 -14.17767 -13.77263 -13.02168 -12.92481 -12.72496 -12.27318 -11.66279 -11.35476 -11.33658 -11.12279 -11.01089 -10.81398 -10.64931 -10.55334 -10.47362 -10.20209 -9.88244 -9.69689 -9.56325 -9.06123 -8.50964 -7.70823 -7.41671 -6.87095 -5.91867 -4.11510 2.28018 2.47353 3.26073 3.35610 3.37867 4.39392 4.69555 5.12095 5.30760 5.37469 5.52748 5.54156 5.68859 5.76827 5.98449 6.11082 6.14997 6.23151 6.43898 6.48668 6.51726 6.59771 6.65408 6.81544 6.90451 6.93902 6.99996 7.15709 7.16277 7.35450 7.55458 7.74585 7.79453 8.01836 8.06719 8.47933 8.54061 8.60527 9.00156 9.56024 11.03136 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.014808 B = 0.012988 C = 0.008773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.479154 B = 2155.393468 C = 3190.747011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.088 3.912 3 Si 0.877 3.123 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.532 4.532 8 H 0.057 0.943 9 C 0.243 3.757 10 H 0.008 0.992 11 C -0.045 4.045 12 C -0.052 4.052 13 C -0.154 4.154 14 C -0.138 4.138 15 C -0.167 4.167 16 C 0.085 3.915 17 O -0.503 6.503 18 N -0.467 5.467 19 C 0.067 3.933 20 C -0.125 4.125 21 C -0.127 4.127 22 C 0.027 3.973 23 H 0.255 0.745 24 H 0.153 0.847 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.108 0.892 28 H 0.381 0.619 29 H 0.078 0.922 30 H 0.022 0.978 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.023 0.977 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.482 -4.341 0.475 4.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.121 4.121 3 Si 0.705 3.295 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.570 4.570 8 H 0.075 0.925 9 C 0.136 3.864 10 H 0.025 0.975 11 C -0.047 4.047 12 C -0.070 4.070 13 C -0.172 4.172 14 C -0.156 4.156 15 C -0.185 4.185 16 C 0.041 3.959 17 O -0.312 6.312 18 N -0.191 5.191 19 C -0.061 4.061 20 C -0.164 4.164 21 C -0.165 4.165 22 C -0.101 4.101 23 H 0.066 0.934 24 H 0.171 0.829 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.126 0.874 28 H 0.236 0.764 29 H 0.097 0.903 30 H 0.040 0.960 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.042 0.958 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.273 -4.347 0.465 4.927 hybrid contribution 1.307 0.894 0.240 1.602 sum -0.966 -3.453 0.705 3.654 Atomic orbital electron populations 1.70107 1.05402 1.25367 1.44892 1.24921 0.94670 0.98334 0.94159 0.86793 0.80447 0.84671 0.77616 1.19909 1.21012 1.21082 1.20823 0.92678 0.89667 1.53824 0.92460 1.18259 0.87579 0.95602 0.84946 0.97459 1.20618 0.93818 0.93319 0.96937 1.21376 0.94530 0.93985 0.97119 1.21167 0.99431 1.02631 0.93962 1.20671 0.94377 1.02492 0.98061 1.21062 0.96369 1.04984 0.96135 1.18371 0.85050 1.00168 0.92337 1.84670 1.14163 1.38843 1.93537 1.64962 1.27480 1.24791 1.01845 1.22748 0.93601 1.00489 0.89290 1.22507 0.99275 0.97333 0.97244 1.22358 1.00167 0.97772 0.96245 1.22925 0.99327 0.92788 0.95109 0.93437 0.82902 0.87674 0.87723 0.87398 0.76395 0.90312 0.95993 0.92743 0.91474 0.92921 0.92293 0.95826 0.91794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -21.43 9.72 55.43 0.54 -20.89 16 2 C 0.09 2.25 5.23 -17.82 -0.09 2.15 16 3 Si 0.88 20.19 29.54 -169.99 -5.02 15.17 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.53 -13.67 7.74 -34.44 -0.27 -13.94 16 8 H 0.06 1.49 7.82 -52.48 -0.41 1.08 16 9 C 0.24 5.89 1.34 -70.02 -0.09 5.79 16 10 H 0.01 0.20 7.50 -51.93 -0.39 -0.19 16 11 C -0.05 -1.06 4.25 -104.47 -0.44 -1.51 16 12 C -0.05 -1.17 6.83 -39.60 -0.27 -1.44 16 13 C -0.15 -3.08 10.04 -39.56 -0.40 -3.48 16 14 C -0.14 -2.59 10.04 -39.60 -0.40 -2.98 16 15 C -0.17 -3.28 9.99 -39.43 -0.39 -3.67 16 16 C 0.09 1.86 6.68 -39.21 -0.26 1.60 16 17 O -0.50 -10.28 12.63 -19.41 -0.25 -10.53 16 18 N -0.47 -10.56 2.89 -225.28 -0.65 -11.21 16 19 C 0.07 1.41 5.73 -1.89 -0.01 1.40 16 20 C -0.13 -2.17 7.06 -24.87 -0.18 -2.35 16 21 C -0.13 -2.14 6.93 -25.38 -0.18 -2.31 16 22 C 0.03 0.54 5.62 -2.76 -0.02 0.53 16 23 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 24 H 0.15 3.72 5.93 -52.49 -0.31 3.41 16 25 H 0.11 1.85 8.06 -52.48 -0.42 1.43 16 26 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 27 H 0.11 1.86 8.06 -52.48 -0.42 1.44 16 28 H 0.38 6.52 9.06 45.56 0.41 6.93 16 29 H 0.08 1.80 7.96 -51.93 -0.41 1.39 16 30 H 0.02 0.46 8.02 -51.93 -0.42 0.05 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.02 0.49 7.66 -51.93 -0.40 0.09 16 36 H 0.06 1.28 7.20 -51.93 -0.37 0.91 16 LS Contribution 289.77 15.07 4.37 4.37 Total: -1.00 -27.32 289.77 -8.40 -35.73 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -4.39 Total: 7.57 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -3.00 Total: -20.21 kcal Atomic # 7 Polarization: -31.98 SS G_CDS: -0.11 Total: -32.09 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: -0.25 Total: -10.53 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.32 -8.40 -35.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260097744.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.520 kcal (2) G-P(sol) polarization free energy of solvation -27.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds