Wall clock time and date at job start Mon Mar 30 2020 06:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86791 * 120.00366 * 2 1 4 4 H 1.48500 * 109.47175 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47142 * 300.00034 * 3 2 1 6 6 H 1.48496 * 109.47260 * 60.00086 * 3 2 1 7 7 C 1.37883 * 119.99285 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99568 * 174.46238 * 7 2 1 9 9 C 1.50690 * 120.00404 * 354.46273 * 7 2 1 10 10 H 1.08998 * 109.47375 * 174.49123 * 9 7 2 11 11 C 1.50699 * 109.47111 * 294.48880 * 9 7 2 12 12 C 1.38165 * 120.02864 * 94.67683 * 11 9 7 13 13 C 1.38247 * 120.05534 * 179.97438 * 12 11 9 14 14 C 1.38287 * 120.11400 * 0.02562 * 13 12 11 15 15 C 1.38125 * 120.05219 * 0.02562 * 14 13 12 16 16 C 1.38712 * 120.02759 * 274.39984 * 11 9 7 17 17 O 1.35895 * 120.05674 * 359.97438 * 16 11 9 18 18 N 1.46901 * 109.47548 * 54.48580 * 9 7 2 19 19 C 1.48541 * 110.99381 * 58.22499 * 18 9 7 20 20 C 1.54942 * 103.22262 * 159.72368 * 19 18 9 21 21 C 1.54594 * 102.92408 * 322.58651 * 20 19 18 22 22 C 1.47902 * 111.00546 * 175.61926 * 18 9 7 23 23 H 0.97001 * 119.99272 * 359.97438 * 1 2 3 24 24 H 1.08002 * 119.97286 * 359.97438 * 12 11 9 25 25 H 1.08007 * 119.94591 * 179.97438 * 13 12 11 26 26 H 1.08000 * 119.97522 * 179.97438 * 14 13 12 27 27 H 1.08006 * 120.02669 * 179.97438 * 15 14 13 28 28 H 0.96706 * 113.99992 * 90.00099 * 17 16 11 29 29 H 1.08995 * 110.66669 * 278.15545 * 19 18 9 30 30 H 1.08997 * 110.66703 * 41.29205 * 19 18 9 31 31 H 1.09004 * 110.72118 * 204.22661 * 20 19 18 32 32 H 1.08999 * 110.72479 * 80.94732 * 20 19 18 33 33 H 1.08999 * 110.30573 * 263.04668 * 21 20 19 34 34 H 1.08998 * 110.30939 * 140.87496 * 21 20 19 35 35 H 1.08995 * 109.91214 * 333.51717 * 22 18 9 36 36 H 1.09003 * 109.90872 * 94.80284 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0807 -1.1965 -0.0897 9 6 1.2562 -2.4961 0.1270 10 1 1.9513 -3.3275 0.0102 11 6 0.6060 -2.5719 1.4844 12 6 -0.7075 -2.1746 1.6451 13 6 -1.3047 -2.2444 2.8899 14 6 -0.5894 -2.7114 3.9774 15 6 0.7243 -3.1088 3.8222 16 6 1.3239 -3.0461 2.5725 17 8 2.6140 -3.4433 2.4158 18 7 0.2237 -2.5708 -0.9152 19 6 0.8246 -2.4562 -2.2688 20 6 -0.2602 -3.0671 -3.1911 21 6 -0.8154 -4.2357 -2.3448 22 6 -0.4628 -3.8806 -0.8885 23 1 -0.4849 0.8401 0.0004 24 1 -1.2682 -1.8091 0.7974 25 1 -2.3315 -1.9329 3.0136 26 1 -1.0580 -2.7646 4.9490 27 1 1.2827 -3.4730 4.6719 28 1 3.2617 -2.7372 2.5474 29 1 1.0023 -1.4114 -2.5236 30 1 1.7490 -3.0306 -2.3293 31 1 0.1833 -3.4371 -4.1156 32 1 -1.0424 -2.3380 -3.4021 33 1 -0.3368 -5.1718 -2.6324 34 1 -1.8962 -4.3098 -2.4651 35 1 0.2000 -4.6387 -0.4714 36 1 -1.3728 -3.8106 -0.2925 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260097744.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:35 Heat of formation + Delta-G solvation = -20.346418 kcal Electronic energy + Delta-G solvation = -18821.343963 eV Core-core repulsion = 16077.063145 eV Total energy + Delta-G solvation = -2744.280818 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.71642 -39.09897 -37.19266 -35.30889 -32.93722 -30.81489 -30.19980 -29.47042 -27.96429 -24.75718 -23.13447 -22.30056 -21.54068 -21.04533 -18.97465 -18.20257 -17.11750 -16.91643 -16.28446 -16.24030 -15.79689 -15.40838 -14.68703 -14.56812 -14.40646 -13.93320 -13.31474 -13.09225 -12.98569 -12.82050 -12.73829 -12.46289 -12.37398 -12.21185 -12.03161 -11.76892 -11.59175 -11.34075 -11.28255 -10.78456 -10.46113 -9.33428 -9.09151 -8.64446 -7.86554 -6.12053 0.65787 0.86990 1.40216 1.45572 1.52188 2.47129 3.07431 3.26333 3.66164 3.73399 4.02517 4.05060 4.23684 4.32201 4.47316 4.53941 4.56287 4.79840 4.85507 4.93923 4.98885 5.03243 5.11256 5.16900 5.28963 5.31167 5.45250 5.46951 5.53816 5.74271 5.75608 5.90769 6.10905 6.19960 6.39209 6.59602 6.76888 7.04229 7.10529 7.56645 9.05724 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.014808 B = 0.012988 C = 0.008773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.479154 B = 2155.393468 C = 3190.747011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.057 3.943 3 Si 0.929 3.071 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.547 4.547 8 H 0.042 0.958 9 C 0.249 3.751 10 H -0.021 1.021 11 C -0.072 4.072 12 C -0.065 4.065 13 C -0.157 4.157 14 C -0.127 4.127 15 C -0.166 4.166 16 C 0.067 3.933 17 O -0.510 6.510 18 N -0.479 5.479 19 C 0.063 3.937 20 C -0.114 4.114 21 C -0.118 4.118 22 C 0.028 3.972 23 H 0.253 0.747 24 H 0.131 0.869 25 H 0.130 0.870 26 H 0.146 0.854 27 H 0.136 0.864 28 H 0.393 0.607 29 H 0.052 0.948 30 H 0.013 0.987 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.010 0.990 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.427 -4.708 1.260 5.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.150 4.150 3 Si 0.756 3.244 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.212 1.212 7 C -0.585 4.585 8 H 0.060 0.940 9 C 0.142 3.858 10 H -0.004 1.004 11 C -0.074 4.074 12 C -0.083 4.083 13 C -0.175 4.175 14 C -0.145 4.145 15 C -0.185 4.185 16 C 0.022 3.978 17 O -0.321 6.321 18 N -0.203 5.203 19 C -0.065 4.065 20 C -0.152 4.152 21 C -0.156 4.156 22 C -0.101 4.101 23 H 0.063 0.937 24 H 0.149 0.851 25 H 0.148 0.852 26 H 0.163 0.837 27 H 0.154 0.846 28 H 0.249 0.751 29 H 0.071 0.929 30 H 0.031 0.969 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.028 0.972 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.213 -4.715 1.246 5.840 hybrid contribution 1.613 0.965 0.047 1.880 sum -1.600 -3.750 1.293 4.277 Atomic orbital electron populations 1.70223 1.05990 1.25535 1.45214 1.25350 0.95339 1.00274 0.94045 0.85980 0.79335 0.81736 0.77307 1.20036 1.20896 1.21168 1.20888 0.92103 0.90967 1.54523 0.93978 1.18079 0.87575 0.93705 0.86425 1.00370 1.20627 0.94640 0.95306 0.96794 1.21205 0.94307 0.95027 0.97788 1.21452 1.00699 1.02137 0.93253 1.21107 0.93809 1.00245 0.99322 1.21393 0.97008 1.04150 0.95911 1.18639 0.85478 1.00598 0.93037 1.84626 1.14210 1.39569 1.93713 1.64840 1.27026 1.26457 1.01996 1.22727 0.94760 0.99140 0.89905 1.22446 0.97892 0.97271 0.97586 1.22335 1.01698 0.98208 0.93390 1.22911 0.98408 0.91201 0.97534 0.93692 0.85125 0.85227 0.83654 0.84642 0.75059 0.92924 0.96856 0.89846 0.91579 0.90968 0.90175 0.97215 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.16 9.72 21.45 0.21 -43.96 16 2 C 0.06 2.97 5.23 84.66 0.44 3.41 16 3 Si 0.93 42.08 29.54 68.60 2.03 44.11 16 4 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 7 C -0.55 -29.10 7.74 25.60 0.20 -28.90 16 8 H 0.04 2.29 7.82 -2.91 -0.02 2.27 16 9 C 0.25 12.55 1.34 43.42 0.06 12.61 16 10 H -0.02 -1.15 7.50 -2.39 -0.02 -1.17 16 11 C -0.07 -3.43 4.25 -19.77 -0.08 -3.52 16 12 C -0.06 -2.94 6.83 22.25 0.15 -2.78 16 13 C -0.16 -6.01 10.04 22.28 0.22 -5.78 16 14 C -0.13 -4.35 10.04 22.25 0.22 -4.12 16 15 C -0.17 -6.14 9.99 22.37 0.22 -5.91 16 16 C 0.07 2.91 6.68 22.51 0.15 3.06 16 17 O -0.51 -21.04 12.63 -92.36 -1.17 -22.21 16 18 N -0.48 -22.26 2.89 -866.65 -2.51 -24.76 16 19 C 0.06 2.71 5.73 86.65 0.50 3.21 16 20 C -0.11 -3.80 7.06 31.80 0.22 -3.57 16 21 C -0.12 -3.75 6.93 31.47 0.22 -3.54 16 22 C 0.03 1.13 5.62 86.45 0.49 1.61 16 23 H 0.25 12.99 8.31 -92.71 -0.77 12.22 16 24 H 0.13 6.48 5.93 -2.91 -0.02 6.46 16 25 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 26 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 27 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 28 H 0.39 13.64 9.06 -74.05 -0.67 12.97 16 29 H 0.05 2.50 7.96 -2.39 -0.02 2.48 16 30 H 0.01 0.58 8.02 -2.39 -0.02 0.56 16 31 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 32 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.01 0.41 7.66 -2.39 -0.02 0.39 16 36 H 0.06 2.42 7.20 -2.39 -0.02 2.40 16 Total: -1.00 -59.45 289.77 1.97 -57.47 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 0.40 Total: 23.57 kcal Atomic # 6 Polarization: -37.24 SS G_CDS: 3.01 Total: -34.23 kcal Atomic # 7 Polarization: -66.42 SS G_CDS: -2.30 Total: -68.72 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -1.17 Total: -22.21 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -59.45 1.97 -57.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260097744.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.125 kcal (2) G-P(sol) polarization free energy of solvation -59.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds