Wall clock time and date at job start Mon Mar 30 2020 06:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47461 * 2 1 4 4 C 1.36809 * 125.06953 * 265.25924 * 3 2 1 5 5 C 1.34248 * 109.92848 * 180.15592 * 4 3 2 6 6 C 1.50700 * 126.49061 * 179.89666 * 5 4 3 7 7 C 1.50702 * 109.46869 * 264.68355 * 6 5 4 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99942 * 179.72213 * 7 6 5 10 10 N 1.31514 * 119.99698 * 0.28408 * 9 7 6 11 11 Si 1.86794 * 119.99837 * 180.27476 * 9 7 6 12 12 H 1.48501 * 109.47188 * 90.00793 * 11 9 7 13 13 H 1.48501 * 109.47085 * 210.00372 * 11 9 7 14 14 H 1.48498 * 109.47634 * 330.00608 * 11 9 7 15 15 C 1.46482 * 107.01103 * 359.62777 * 5 4 3 16 16 C 1.39672 * 133.97283 * 180.25926 * 15 5 4 17 17 C 1.37794 * 119.63184 * 180.02562 * 16 15 5 18 18 F 1.35097 * 119.83403 * 179.97438 * 17 16 15 19 19 C 1.39036 * 120.33004 * 359.97438 * 17 16 15 20 20 C 1.37712 * 120.64994 * 359.97438 * 19 17 16 21 21 C 1.37817 * 125.06657 * 85.00088 * 3 2 1 22 22 H 1.08997 * 109.46956 * 300.00389 * 1 2 3 23 23 H 1.09005 * 109.46636 * 59.99619 * 1 2 3 24 24 H 1.08995 * 109.47207 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47360 * 239.99886 * 2 1 3 26 26 H 1.09004 * 109.47149 * 120.00306 * 2 1 3 27 27 H 1.08003 * 125.03832 * 0.02562 * 4 3 2 28 28 H 1.09004 * 109.47210 * 144.68649 * 6 5 4 29 29 H 1.08994 * 109.47551 * 24.68301 * 6 5 4 30 30 H 0.97005 * 119.99651 * 179.97438 * 10 9 7 31 31 H 1.08002 * 120.18086 * 359.93963 * 16 15 5 32 32 H 1.07993 * 119.67090 * 180.02562 * 19 17 16 33 33 H 1.07997 * 120.02298 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3677 2.0914 -1.1159 5 6 2.7756 3.3217 -0.7662 6 6 3.2456 4.4087 -1.6981 7 6 4.7495 4.3772 -1.7887 8 1 5.3091 3.6432 -1.2278 9 6 5.4109 5.2815 -2.5924 10 7 4.7295 6.1751 -3.2756 11 14 7.2746 5.2375 -2.7106 12 1 7.6792 4.3348 -3.8182 13 1 7.7862 6.6062 -2.9756 14 1 7.8401 4.7366 -1.4321 15 6 2.6712 3.4093 0.6923 16 6 2.9391 4.4138 1.6251 17 6 2.7300 4.1721 2.9655 18 9 2.9883 5.1406 3.8713 19 6 2.2545 2.9366 3.3903 20 6 1.9852 1.9377 2.4815 21 6 2.1897 2.1605 1.1237 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.3239 1.7171 -2.1280 28 1 2.9248 5.3782 -1.3167 29 1 2.8186 4.2484 -2.6880 30 1 5.1948 6.8116 -3.8408 31 1 3.3095 5.3740 1.2977 32 1 2.0940 2.7589 4.4434 33 1 1.6158 0.9819 2.8226 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260102805.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:00 Heat of formation + Delta-G solvation = 1.706429 kcal Electronic energy + Delta-G solvation = -17242.668655 eV Core-core repulsion = 14375.883816 eV Total energy + Delta-G solvation = -2866.784839 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.31844 -40.84288 -36.45785 -34.30612 -32.70343 -30.79352 -29.43250 -28.34037 -26.60908 -23.66937 -22.63758 -22.28984 -20.71559 -18.94016 -16.85617 -16.66719 -16.16105 -15.79044 -15.11775 -14.80106 -14.50562 -14.39810 -14.19252 -13.37751 -12.89722 -12.78023 -12.40821 -12.31513 -12.17607 -11.94006 -11.75955 -11.28865 -11.11608 -10.82560 -10.60336 -10.54516 -10.19102 -9.67890 -9.44798 -8.90342 -8.36171 -7.63746 -6.91769 -5.96828 -4.00621 1.45542 1.84310 3.17595 3.32431 3.34116 3.40657 3.46670 4.21477 4.50976 4.71802 4.75268 4.93248 5.03541 5.19451 5.27124 5.33264 5.38013 5.56521 5.57559 5.65512 5.96220 6.00054 6.06227 6.27276 6.41531 6.60276 6.68556 6.77389 7.27038 7.36021 7.55607 7.63830 7.82467 7.94398 7.99015 8.42596 9.04703 9.62917 11.11748 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.018092 B = 0.007443 C = 0.005753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.240048 B = 3760.786510 C = 4865.519597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.111 3.889 3 N -0.489 5.489 4 C 0.019 3.981 5 C -0.104 4.104 6 C 0.080 3.920 7 C -0.507 4.507 8 H 0.055 0.945 9 C 0.057 3.943 10 N -0.896 5.896 11 Si 0.892 3.108 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.274 1.274 15 C -0.077 4.077 16 C -0.083 4.083 17 C 0.047 3.953 18 F -0.150 7.150 19 C -0.137 4.137 20 C -0.112 4.112 21 C 0.088 3.912 22 H 0.060 0.940 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.163 0.837 28 H 0.028 0.972 29 H 0.027 0.973 30 H 0.261 0.739 31 H 0.138 0.862 32 H 0.128 0.872 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.743 -11.236 8.443 16.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.011 4.011 3 N -0.174 5.174 4 C -0.102 4.102 5 C -0.110 4.110 6 C 0.042 3.958 7 C -0.545 4.545 8 H 0.074 0.926 9 C -0.144 4.144 10 N -0.536 5.536 11 Si 0.719 3.281 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.199 1.199 15 C -0.083 4.083 16 C -0.102 4.102 17 C 0.026 3.974 18 F -0.129 7.129 19 C -0.157 4.157 20 C -0.133 4.133 21 C -0.018 4.018 22 H 0.079 0.921 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.105 0.895 26 H 0.097 0.903 27 H 0.181 0.819 28 H 0.046 0.954 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.155 0.845 32 H 0.146 0.854 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.819 -11.391 8.285 16.110 hybrid contribution 1.118 0.101 0.004 1.123 sum -6.700 -11.290 8.289 15.526 Atomic orbital electron populations 1.22201 0.95258 1.02240 1.03171 1.21593 0.94810 0.81167 1.03544 1.43849 1.57489 1.11436 1.04633 1.21590 1.05619 0.92467 0.90564 1.21225 1.01852 0.96524 0.91435 1.17735 0.95559 0.90521 0.91950 1.21123 0.91179 1.15880 1.26345 0.92629 1.24997 0.98258 0.95444 0.95662 1.69955 1.35400 1.18968 1.29239 0.86594 0.85830 0.77222 0.78409 1.20727 1.21201 1.19861 1.19015 1.02762 0.92375 0.94120 1.20570 0.99354 1.00259 0.90035 1.17247 1.06943 0.86842 0.86352 1.91429 1.92614 1.62232 1.66665 1.20555 1.03401 0.92184 0.99592 1.19619 1.05310 0.99260 0.89145 1.18253 1.03452 0.91796 0.88326 0.92097 0.91838 0.91349 0.89512 0.90303 0.81929 0.95375 0.95462 0.92952 0.84458 0.85381 0.86283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 10.24 37.16 0.38 -1.23 16 2 C 0.11 1.21 6.72 -4.04 -0.03 1.18 16 3 N -0.49 -7.74 2.78 -114.41 -0.32 -8.06 16 4 C 0.02 0.34 11.19 -16.74 -0.19 0.16 16 5 C -0.10 -2.29 5.50 -102.71 -0.57 -2.86 16 6 C 0.08 2.06 5.50 -29.03 -0.16 1.90 16 7 C -0.51 -14.27 9.09 -34.44 -0.31 -14.59 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 10 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 11 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 15 C -0.08 -1.59 6.35 -105.14 -0.67 -2.26 16 16 C -0.08 -1.65 10.07 -39.21 -0.40 -2.04 16 17 C 0.05 0.82 7.29 -39.45 -0.29 0.54 16 18 F -0.15 -2.65 17.26 2.25 0.04 -2.61 16 19 C -0.14 -2.07 9.99 -39.48 -0.39 -2.46 16 20 C -0.11 -1.66 9.98 -39.45 -0.39 -2.05 16 21 C 0.09 1.54 6.81 -83.95 -0.57 0.97 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.09 0.82 8.12 -51.93 -0.42 0.40 16 26 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.16 2.62 8.06 -52.48 -0.42 2.19 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 31 H 0.14 2.81 8.06 -52.49 -0.42 2.39 16 32 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 33 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 293.63 15.07 4.43 4.43 Total: -1.00 -30.95 293.63 -8.01 -38.96 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -4.19 Total: -2.45 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -3.68 Total: -21.20 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: 0.42 Total: -33.89 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.04 Total: -2.61 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.95 -8.01 -38.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260102805.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.667 kcal (2) G-P(sol) polarization free energy of solvation -30.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds