Wall clock time and date at job start Mon Mar 30 2020 06:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99945 * 2 1 4 4 H 1.48498 * 109.47468 * 270.00111 * 3 2 1 5 5 H 1.48496 * 109.47141 * 30.00529 * 3 2 1 6 6 H 1.48503 * 109.46737 * 150.00447 * 3 2 1 7 7 C 1.37882 * 119.99777 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99529 * 172.86602 * 7 2 1 9 9 C 1.50698 * 120.00001 * 353.14318 * 7 2 1 10 10 H 1.08999 * 109.47599 * 29.70029 * 9 7 2 11 11 C 1.50706 * 109.46706 * 269.70464 * 9 7 2 12 12 C 1.38269 * 119.94225 * 279.72273 * 11 9 7 13 13 C 1.38144 * 120.05360 * 179.72607 * 12 11 9 14 14 C 1.38729 * 119.94384 * 0.57526 * 13 12 11 15 15 O 1.35900 * 120.05642 * 179.68047 * 14 13 12 16 16 C 1.38732 * 119.89039 * 359.70307 * 14 13 12 17 17 C 1.38154 * 119.94333 * 359.97438 * 16 14 13 18 18 N 1.46902 * 109.47054 * 149.70514 * 9 7 2 19 19 C 1.48538 * 110.99865 * 180.38203 * 18 9 7 20 20 C 1.54934 * 103.22205 * 159.71948 * 19 18 9 21 21 C 1.54594 * 102.92394 * 322.58680 * 20 19 18 22 22 C 1.47891 * 110.99808 * 297.77990 * 18 9 7 23 23 H 0.96993 * 119.99798 * 359.97438 * 1 2 3 24 24 H 1.08002 * 119.97181 * 359.97438 * 12 11 9 25 25 H 1.08001 * 120.02813 * 180.25365 * 13 12 11 26 26 H 0.96707 * 113.99903 * 270.01919 * 15 14 13 27 27 H 1.07998 * 120.02885 * 179.97438 * 16 14 13 28 28 H 1.07990 * 119.97048 * 179.97438 * 17 16 14 29 29 H 1.08993 * 110.67014 * 278.15677 * 19 18 9 30 30 H 1.09001 * 110.66182 * 41.28893 * 19 18 9 31 31 H 1.09011 * 110.71875 * 204.22922 * 20 19 18 32 32 H 1.08998 * 110.87742 * 81.02281 * 20 19 18 33 33 H 1.08998 * 110.30786 * 263.03974 * 21 20 19 34 34 H 1.09003 * 110.30314 * 140.87776 * 21 20 19 35 35 H 1.08998 * 109.92154 * 333.51234 * 22 18 9 36 36 H 1.09001 * 109.91878 * 94.80966 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0783 -1.1976 -0.1167 9 6 1.2591 -2.4946 0.1547 10 1 0.2564 -2.3904 -0.2599 11 6 1.1639 -2.8475 1.6168 12 6 2.2403 -3.4336 2.2568 13 6 2.1576 -3.7529 3.5983 14 6 0.9890 -3.4959 4.3004 15 8 0.9028 -3.8150 5.6186 16 6 -0.0917 -2.9130 3.6546 17 6 -0.0016 -2.5895 2.3145 18 7 1.9766 -3.5586 -0.5602 19 6 1.2647 -4.8564 -0.4368 20 6 1.8234 -5.6813 -1.6233 21 6 1.9679 -4.6240 -2.7419 22 6 2.0434 -3.2715 -2.0095 23 1 -0.4849 0.8400 0.0004 24 1 3.1480 -3.6383 1.7084 25 1 3.0001 -4.2069 4.0987 26 1 0.5735 -4.7087 5.7862 27 1 -1.0026 -2.7124 4.1989 28 1 -0.8426 -2.1362 1.8112 29 1 1.5028 -5.3372 0.5119 30 1 0.1886 -4.7160 -0.5388 31 1 1.1194 -6.4600 -1.9171 32 1 2.7923 -6.1137 -1.3737 33 1 1.1001 -4.6495 -3.4009 34 1 2.8813 -4.7977 -3.3108 35 1 1.2025 -2.6430 -2.3027 36 1 2.9833 -2.7730 -2.2463 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260113632.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:38 Heat of formation + Delta-G solvation = -17.008495 kcal Electronic energy + Delta-G solvation = -18199.258014 eV Core-core repulsion = 15455.121940 eV Total energy + Delta-G solvation = -2744.136074 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.14549 -37.95835 -36.03217 -33.33041 -31.27269 -30.12047 -28.66506 -28.05639 -25.97338 -22.98105 -21.92735 -20.99926 -20.10133 -19.49959 -17.75663 -16.44089 -15.66528 -15.41614 -14.86724 -14.56501 -14.52326 -13.80681 -13.18722 -13.02665 -12.69520 -12.54312 -11.90497 -11.69486 -11.65936 -11.43692 -11.11437 -11.01909 -10.71918 -10.65540 -10.52699 -10.29731 -10.01983 -9.90442 -9.69582 -9.34816 -8.59520 -8.13922 -7.51962 -7.31562 -6.15343 -4.17649 2.11543 2.21647 3.25769 3.33272 3.38372 4.32812 4.48687 4.83502 5.03495 5.18097 5.30565 5.35005 5.53466 5.67763 5.73908 5.95801 6.04572 6.20936 6.25600 6.31108 6.39093 6.42677 6.44787 6.57467 6.65439 6.79300 6.79996 6.86854 7.17467 7.22141 7.31298 7.61489 7.66932 7.76063 7.86918 8.14184 8.22327 8.43298 8.94280 9.46394 10.91193 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.013651 B = 0.011035 C = 0.006839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.689858 B = 2536.696057 C = 4093.077087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.067 3.933 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.497 4.497 8 H 0.065 0.935 9 C 0.227 3.773 10 H 0.041 0.959 11 C -0.029 4.029 12 C -0.093 4.093 13 C -0.155 4.155 14 C 0.062 3.938 15 O -0.505 6.505 16 C -0.151 4.151 17 C -0.099 4.099 18 N -0.513 5.513 19 C 0.032 3.968 20 C -0.122 4.122 21 C -0.134 4.134 22 C 0.058 3.942 23 H 0.264 0.736 24 H 0.126 0.874 25 H 0.112 0.888 26 H 0.375 0.625 27 H 0.112 0.888 28 H 0.125 0.875 29 H 0.070 0.930 30 H 0.033 0.967 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.045 0.955 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.559 -9.317 0.745 9.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.137 4.137 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.535 4.535 8 H 0.083 0.917 9 C 0.121 3.879 10 H 0.059 0.941 11 C -0.030 4.030 12 C -0.111 4.111 13 C -0.174 4.174 14 C 0.018 3.982 15 O -0.314 6.314 16 C -0.170 4.170 17 C -0.118 4.118 18 N -0.238 5.238 19 C -0.096 4.096 20 C -0.160 4.160 21 C -0.172 4.172 22 C -0.070 4.070 23 H 0.073 0.927 24 H 0.144 0.856 25 H 0.130 0.870 26 H 0.228 0.772 27 H 0.130 0.870 28 H 0.143 0.857 29 H 0.089 0.911 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.133 -8.611 1.046 8.748 hybrid contribution -0.635 0.721 -0.193 0.979 sum 0.499 -7.890 0.853 7.952 Atomic orbital electron populations 1.69901 1.06001 1.27095 1.49349 1.24981 0.94890 0.99454 0.94353 0.86531 0.80114 0.82973 0.78119 1.20604 1.21128 1.19602 1.20926 0.94071 0.88930 1.49582 0.91696 1.18653 0.94843 0.88706 0.85718 0.94078 1.20558 0.91628 0.91835 0.98988 1.20911 0.99217 0.98272 0.92692 1.21269 0.97476 1.03797 0.94859 1.18332 0.94181 1.02892 0.82799 1.84843 1.88430 1.36215 1.21883 1.21251 0.97932 1.02691 0.95105 1.21022 0.98788 0.98913 0.93093 1.64809 1.48519 1.02028 1.08441 1.23161 0.96125 0.92418 0.97899 1.22445 1.00681 0.97120 0.95739 1.22468 1.00872 0.96122 0.97726 1.22482 1.01605 0.94690 0.88262 0.92664 0.85600 0.86963 0.77193 0.86955 0.85698 0.91128 0.94850 0.92336 0.91484 0.92460 0.92025 0.93620 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.30 12.83 55.43 0.71 -23.59 16 2 C 0.07 1.78 5.45 -17.82 -0.10 1.68 16 3 Si 0.90 21.10 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.50 -13.07 7.75 -34.44 -0.27 -13.33 16 8 H 0.06 1.75 7.82 -52.49 -0.41 1.33 16 9 C 0.23 5.41 1.45 -70.01 -0.10 5.31 16 10 H 0.04 1.10 7.07 -51.93 -0.37 0.73 16 11 C -0.03 -0.65 4.10 -104.60 -0.43 -1.07 16 12 C -0.09 -1.91 8.47 -39.60 -0.34 -2.24 16 13 C -0.16 -2.91 9.99 -39.43 -0.39 -3.31 16 14 C 0.06 1.15 6.70 -39.22 -0.26 0.89 16 15 O -0.51 -8.16 13.50 -19.43 -0.26 -8.42 16 16 C -0.15 -2.95 9.99 -39.43 -0.39 -3.34 16 17 C -0.10 -2.17 9.66 -39.60 -0.38 -2.55 16 18 N -0.51 -10.63 4.38 -225.28 -0.99 -11.62 16 19 C 0.03 0.58 5.69 -1.90 -0.01 0.57 16 20 C -0.12 -1.80 7.06 -24.87 -0.18 -1.97 16 21 C -0.13 -2.05 6.93 -25.38 -0.18 -2.22 16 22 C 0.06 1.12 5.91 -2.76 -0.02 1.11 16 23 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 24 H 0.13 2.57 7.70 -52.49 -0.40 2.17 16 25 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 26 H 0.37 4.02 9.06 45.56 0.41 4.43 16 27 H 0.11 1.96 8.06 -52.49 -0.42 1.53 16 28 H 0.13 2.85 8.03 -52.49 -0.42 2.43 16 29 H 0.07 1.23 7.35 -51.93 -0.38 0.85 16 30 H 0.03 0.62 7.99 -51.93 -0.42 0.21 16 31 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 36 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 298.59 15.07 4.50 4.50 Total: -1.00 -28.49 298.59 -8.58 -37.08 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -4.48 Total: 6.47 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: -3.04 Total: -20.49 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: -0.28 Total: -35.21 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: -0.26 Total: -8.42 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.49 -8.58 -37.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260113632.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.068 kcal (2) G-P(sol) polarization free energy of solvation -28.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds