Wall clock time and date at job start Mon Mar 30 2020 06:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99945 * 2 1 4 4 H 1.48498 * 109.47468 * 270.00111 * 3 2 1 5 5 H 1.48496 * 109.47141 * 30.00529 * 3 2 1 6 6 H 1.48503 * 109.46737 * 150.00447 * 3 2 1 7 7 C 1.37882 * 119.99777 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99529 * 172.86602 * 7 2 1 9 9 C 1.50698 * 120.00001 * 353.14318 * 7 2 1 10 10 H 1.08999 * 109.47599 * 29.70029 * 9 7 2 11 11 C 1.50706 * 109.46706 * 269.70464 * 9 7 2 12 12 C 1.38269 * 119.94225 * 279.72273 * 11 9 7 13 13 C 1.38144 * 120.05360 * 179.72607 * 12 11 9 14 14 C 1.38729 * 119.94384 * 0.57526 * 13 12 11 15 15 O 1.35900 * 120.05642 * 179.68047 * 14 13 12 16 16 C 1.38732 * 119.89039 * 359.70307 * 14 13 12 17 17 C 1.38154 * 119.94333 * 359.97438 * 16 14 13 18 18 N 1.46902 * 109.47054 * 149.70514 * 9 7 2 19 19 C 1.48538 * 110.99865 * 180.38203 * 18 9 7 20 20 C 1.54934 * 103.22205 * 159.71948 * 19 18 9 21 21 C 1.54594 * 102.92394 * 322.58680 * 20 19 18 22 22 C 1.47891 * 110.99808 * 297.77990 * 18 9 7 23 23 H 0.96993 * 119.99798 * 359.97438 * 1 2 3 24 24 H 1.08002 * 119.97181 * 359.97438 * 12 11 9 25 25 H 1.08001 * 120.02813 * 180.25365 * 13 12 11 26 26 H 0.96707 * 113.99903 * 270.01919 * 15 14 13 27 27 H 1.07998 * 120.02885 * 179.97438 * 16 14 13 28 28 H 1.07990 * 119.97048 * 179.97438 * 17 16 14 29 29 H 1.08993 * 110.67014 * 278.15677 * 19 18 9 30 30 H 1.09001 * 110.66182 * 41.28893 * 19 18 9 31 31 H 1.09011 * 110.71875 * 204.22922 * 20 19 18 32 32 H 1.08998 * 110.87742 * 81.02281 * 20 19 18 33 33 H 1.08998 * 110.30786 * 263.03974 * 21 20 19 34 34 H 1.09003 * 110.30314 * 140.87776 * 21 20 19 35 35 H 1.08998 * 109.92154 * 333.51234 * 22 18 9 36 36 H 1.09001 * 109.91878 * 94.80966 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0783 -1.1976 -0.1167 9 6 1.2591 -2.4946 0.1547 10 1 0.2564 -2.3904 -0.2599 11 6 1.1639 -2.8475 1.6168 12 6 2.2403 -3.4336 2.2568 13 6 2.1576 -3.7529 3.5983 14 6 0.9890 -3.4959 4.3004 15 8 0.9028 -3.8150 5.6186 16 6 -0.0917 -2.9130 3.6546 17 6 -0.0016 -2.5895 2.3145 18 7 1.9766 -3.5586 -0.5602 19 6 1.2647 -4.8564 -0.4368 20 6 1.8234 -5.6813 -1.6233 21 6 1.9679 -4.6240 -2.7419 22 6 2.0434 -3.2715 -2.0095 23 1 -0.4849 0.8400 0.0004 24 1 3.1480 -3.6383 1.7084 25 1 3.0001 -4.2069 4.0987 26 1 0.5735 -4.7087 5.7862 27 1 -1.0026 -2.7124 4.1989 28 1 -0.8426 -2.1362 1.8112 29 1 1.5028 -5.3372 0.5119 30 1 0.1886 -4.7160 -0.5388 31 1 1.1194 -6.4600 -1.9171 32 1 2.7923 -6.1137 -1.3737 33 1 1.1001 -4.6495 -3.4009 34 1 2.8813 -4.7977 -3.3108 35 1 1.2025 -2.6430 -2.3027 36 1 2.9833 -2.7730 -2.2463 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260113632.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:38 Heat of formation + Delta-G solvation = -35.622489 kcal Electronic energy + Delta-G solvation = -18200.065178 eV Core-core repulsion = 15455.121940 eV Total energy + Delta-G solvation = -2744.943238 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.70412 -39.43860 -37.46942 -35.16748 -32.99247 -31.70321 -30.16056 -29.54263 -27.82846 -24.73032 -23.50727 -22.50483 -21.45854 -21.16680 -19.16918 -18.43168 -17.15330 -17.06649 -16.43898 -16.16505 -16.02898 -15.40082 -14.84817 -14.58342 -14.31717 -14.09846 -13.54646 -13.31988 -13.20078 -13.05050 -12.84729 -12.70166 -12.43919 -12.07507 -11.98939 -11.90407 -11.73986 -11.35199 -11.19911 -11.15542 -10.62917 -9.72027 -9.14471 -9.02992 -8.17083 -6.26316 0.56370 0.61991 1.36625 1.39196 1.48855 2.37523 2.90894 3.16981 3.45151 3.49457 3.94107 4.00446 4.18063 4.22117 4.25211 4.52156 4.55872 4.75948 4.78175 4.83415 4.94848 5.00291 5.08250 5.14964 5.17826 5.24759 5.29258 5.39853 5.44801 5.62150 5.66272 5.67654 5.99245 6.03764 6.19402 6.33414 6.66287 6.91448 6.99203 7.40698 8.87643 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.013651 B = 0.011035 C = 0.006839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.689858 B = 2536.696057 C = 4093.077087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.021 3.979 3 Si 0.949 3.051 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.506 4.506 8 H 0.054 0.946 9 C 0.238 3.762 10 H -0.001 1.001 11 C -0.052 4.052 12 C -0.095 4.095 13 C -0.150 4.150 14 C 0.078 3.922 15 O -0.506 6.506 16 C -0.153 4.153 17 C -0.116 4.116 18 N -0.518 5.518 19 C 0.031 3.969 20 C -0.110 4.110 21 C -0.124 4.124 22 C 0.054 3.946 23 H 0.262 0.738 24 H 0.125 0.875 25 H 0.143 0.857 26 H 0.404 0.596 27 H 0.132 0.868 28 H 0.101 0.899 29 H 0.075 0.925 30 H 0.017 0.983 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.011 0.989 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.755 -10.979 1.808 11.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.179 4.179 3 Si 0.775 3.225 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.545 4.545 8 H 0.072 0.928 9 C 0.131 3.869 10 H 0.017 0.983 11 C -0.053 4.053 12 C -0.113 4.113 13 C -0.168 4.168 14 C 0.033 3.967 15 O -0.318 6.318 16 C -0.172 4.172 17 C -0.135 4.135 18 N -0.242 5.242 19 C -0.097 4.097 20 C -0.148 4.148 21 C -0.163 4.163 22 C -0.074 4.074 23 H 0.071 0.929 24 H 0.143 0.857 25 H 0.161 0.839 26 H 0.262 0.738 27 H 0.150 0.850 28 H 0.119 0.881 29 H 0.093 0.907 30 H 0.035 0.965 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.030 0.970 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.330 -10.307 2.112 10.776 hybrid contribution -1.025 1.147 -0.426 1.596 sum 1.305 -9.160 1.686 9.405 Atomic orbital electron populations 1.70024 1.07077 1.27443 1.50666 1.25649 0.95589 1.02228 0.94440 0.85686 0.78870 0.79644 0.78314 1.19842 1.21027 1.19489 1.21117 0.93568 0.90473 1.49300 0.92812 1.18330 0.92413 0.89050 0.87142 0.98349 1.20433 0.92862 0.93894 0.98106 1.20891 0.98394 0.98323 0.93735 1.21523 0.98457 1.02859 0.93960 1.18319 0.93458 1.01319 0.83555 1.84770 1.88571 1.38635 1.19831 1.21413 0.99302 1.02341 0.94127 1.20912 0.98177 1.00053 0.94396 1.64746 1.48245 1.02387 1.08848 1.23215 0.95142 0.91517 0.99858 1.22439 1.01918 0.96915 0.93539 1.22425 1.02609 0.93398 0.97822 1.22506 0.99662 0.96919 0.88341 0.92863 0.85690 0.83922 0.73818 0.85039 0.88130 0.90657 0.96462 0.89627 0.90020 0.91456 0.89627 0.97050 0.92030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.46 12.83 21.45 0.28 -52.18 16 2 C 0.02 1.17 5.45 84.66 0.46 1.63 16 3 Si 0.95 44.22 29.54 68.60 2.03 46.25 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.51 -27.68 7.75 25.60 0.20 -27.48 16 8 H 0.05 2.98 7.82 -2.91 -0.02 2.96 16 9 C 0.24 11.88 1.45 43.42 0.06 11.94 16 10 H 0.00 -0.07 7.07 -2.39 -0.02 -0.09 16 11 C -0.05 -2.38 4.10 -19.85 -0.08 -2.46 16 12 C -0.10 -3.84 8.47 22.25 0.19 -3.65 16 13 C -0.15 -5.21 9.99 22.36 0.22 -4.98 16 14 C 0.08 2.68 6.70 22.51 0.15 2.84 16 15 O -0.51 -14.27 13.50 -92.42 -1.25 -15.52 16 16 C -0.15 -5.81 9.99 22.37 0.22 -5.59 16 17 C -0.12 -5.23 9.66 22.26 0.22 -5.01 16 18 N -0.52 -21.94 4.38 -866.66 -3.80 -25.74 16 19 C 0.03 1.09 5.69 86.65 0.49 1.58 16 20 C -0.11 -2.98 7.06 31.80 0.22 -2.75 16 21 C -0.12 -3.61 6.93 31.47 0.22 -3.39 16 22 C 0.05 2.15 5.91 86.45 0.51 2.66 16 23 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 24 H 0.13 5.01 7.70 -2.91 -0.02 4.99 16 25 H 0.14 4.09 8.06 -2.91 -0.02 4.06 16 26 H 0.40 6.79 9.06 -74.05 -0.67 6.12 16 27 H 0.13 4.38 8.06 -2.91 -0.02 4.35 16 28 H 0.10 4.92 8.03 -2.92 -0.02 4.89 16 29 H 0.08 2.57 7.35 -2.39 -0.02 2.55 16 30 H 0.02 0.66 7.99 -2.39 -0.02 0.64 16 31 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 32 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.01 0.51 7.70 -2.39 -0.02 0.49 16 36 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -63.45 298.59 0.74 -62.71 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.39 Total: 19.14 kcal Atomic # 6 Polarization: -37.76 SS G_CDS: 3.09 Total: -34.67 kcal Atomic # 7 Polarization: -74.39 SS G_CDS: -3.52 Total: -77.92 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -1.25 Total: -15.52 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -63.45 0.74 -62.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260113632.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.092 kcal (2) G-P(sol) polarization free energy of solvation -63.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds