Wall clock time and date at job start Mon Mar 30 2020 06:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00267 * 2 1 4 4 H 1.48503 * 109.47134 * 240.00213 * 3 2 1 5 5 H 1.48501 * 109.46993 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47333 * 120.00078 * 3 2 1 7 7 C 1.37880 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00041 * 174.50267 * 7 2 1 9 9 C 1.50700 * 119.99782 * 354.50757 * 7 2 1 10 10 H 1.08997 * 109.47117 * 334.28154 * 9 7 2 11 11 C 1.50699 * 109.47281 * 94.29016 * 9 7 2 12 12 C 1.38260 * 119.94620 * 73.64087 * 11 9 7 13 13 C 1.38142 * 120.05562 * 179.72973 * 12 11 9 14 14 C 1.38738 * 119.94182 * 0.56103 * 13 12 11 15 15 O 1.35906 * 120.05405 * 179.68458 * 14 13 12 16 16 C 1.38726 * 119.88853 * 359.71309 * 14 13 12 17 17 C 1.38148 * 119.94477 * 359.97438 * 16 14 13 18 18 N 1.46898 * 109.46831 * 214.28922 * 9 7 2 19 19 C 1.47843 * 111.00742 * 55.50638 * 18 9 7 20 20 C 1.54899 * 104.80217 * 146.36066 * 19 18 9 21 21 C 1.55142 * 101.65456 * 322.93477 * 20 19 18 22 22 C 1.47441 * 111.00245 * 176.35008 * 18 9 7 23 23 H 0.97001 * 120.00093 * 0.02562 * 1 2 3 24 24 H 1.07998 * 119.97275 * 359.97438 * 12 11 9 25 25 H 1.08001 * 120.02937 * 180.25107 * 13 12 11 26 26 H 0.96702 * 114.00163 * 270.02569 * 15 14 13 27 27 H 1.08006 * 120.02887 * 179.97438 * 16 14 13 28 28 H 1.08002 * 119.97139 * 180.02562 * 17 16 14 29 29 H 1.09005 * 110.36574 * 27.53095 * 19 18 9 30 30 H 1.08997 * 110.37335 * 265.20091 * 19 18 9 31 31 H 1.08997 * 110.99483 * 204.83964 * 20 19 18 32 32 H 1.09010 * 110.98790 * 81.02320 * 20 19 18 33 33 H 1.08999 * 110.70396 * 154.02936 * 21 20 19 34 34 H 1.09001 * 110.70355 * 277.27140 * 21 20 19 35 35 H 1.09000 * 109.89524 * 117.33121 * 22 18 9 36 36 H 1.09009 * 109.88894 * 356.15013 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0808 -1.1962 -0.0901 9 6 1.2561 -2.4962 0.1238 10 1 0.3127 -2.3250 0.6422 11 6 0.9810 -3.0507 -1.2502 12 6 2.0085 -3.6097 -1.9873 13 6 1.7578 -4.1238 -3.2448 14 6 0.4760 -4.0682 -3.7726 15 8 0.2280 -4.5674 -5.0121 16 6 -0.5521 -3.5016 -3.0333 17 6 -0.2975 -2.9948 -1.7736 18 7 2.0663 -3.4557 0.8859 19 6 2.4469 -2.9004 2.2021 20 6 2.4722 -4.1216 3.1546 21 6 1.2761 -4.9562 2.6259 22 6 1.3298 -4.7144 1.1028 23 1 -0.4850 0.8400 -0.0004 24 1 3.0072 -3.6481 -1.5780 25 1 2.5599 -4.5640 -3.8185 26 1 0.3366 -3.9228 -5.7247 27 1 -1.5508 -3.4568 -3.4422 28 1 -1.0977 -2.5540 -1.1975 29 1 1.7059 -2.1740 2.5360 30 1 3.4335 -2.4400 2.1488 31 1 2.3080 -3.8147 4.1875 32 1 3.4071 -4.6737 3.0568 33 1 1.4133 -6.0133 2.8534 34 1 0.3372 -4.5901 3.0414 35 1 1.8510 -5.5380 0.6148 36 1 0.3186 -4.6256 0.7055 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260113645.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:40 Heat of formation + Delta-G solvation = -36.069997 kcal Electronic energy + Delta-G solvation = -18204.619339 eV Core-core repulsion = 15459.656696 eV Total energy + Delta-G solvation = -2744.962643 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.69150 -39.46958 -37.45864 -35.13346 -32.94056 -31.69298 -30.13138 -29.59429 -27.79603 -24.72654 -23.49893 -22.45198 -21.72717 -20.94936 -19.15589 -18.55262 -17.10605 -16.87355 -16.45542 -16.21991 -16.00504 -15.55675 -14.72933 -14.41433 -14.24400 -14.12419 -13.75619 -13.46531 -13.20729 -12.92215 -12.80742 -12.68924 -12.46031 -12.02369 -11.91994 -11.84506 -11.71175 -11.51175 -11.22494 -11.15654 -10.61758 -9.71055 -9.12980 -8.90046 -8.15475 -6.25524 0.57694 0.63792 1.40559 1.41223 1.48640 2.39071 2.90163 3.18129 3.46802 3.54759 3.91595 3.98225 4.16931 4.21480 4.22758 4.55923 4.59226 4.75539 4.78351 4.84012 4.91137 4.97915 5.09632 5.13693 5.17899 5.22154 5.30308 5.42341 5.45701 5.62876 5.66450 5.70506 5.99157 6.07348 6.20300 6.38563 6.73809 6.92747 6.97301 7.42139 8.89621 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.014478 B = 0.010430 C = 0.006859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.514123 B = 2684.031751 C = 4081.533150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.020 3.980 3 Si 0.952 3.048 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.506 4.506 8 H 0.055 0.945 9 C 0.243 3.757 10 H -0.004 1.004 11 C -0.048 4.048 12 C -0.093 4.093 13 C -0.151 4.151 14 C 0.076 3.924 15 O -0.506 6.506 16 C -0.153 4.153 17 C -0.115 4.115 18 N -0.533 5.533 19 C 0.063 3.937 20 C -0.120 4.120 21 C -0.134 4.134 22 C 0.040 3.960 23 H 0.262 0.738 24 H 0.122 0.878 25 H 0.141 0.859 26 H 0.403 0.597 27 H 0.132 0.868 28 H 0.100 0.900 29 H 0.016 0.984 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.395 -7.410 -1.053 7.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.180 4.180 3 Si 0.778 3.222 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.545 4.545 8 H 0.073 0.927 9 C 0.136 3.864 10 H 0.014 0.986 11 C -0.049 4.049 12 C -0.111 4.111 13 C -0.169 4.169 14 C 0.032 3.968 15 O -0.318 6.318 16 C -0.172 4.172 17 C -0.134 4.134 18 N -0.258 5.258 19 C -0.065 4.065 20 C -0.158 4.158 21 C -0.172 4.172 22 C -0.088 4.088 23 H 0.071 0.929 24 H 0.140 0.860 25 H 0.159 0.841 26 H 0.261 0.739 27 H 0.150 0.850 28 H 0.119 0.881 29 H 0.034 0.966 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.113 0.887 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 2.565 -7.895 -1.046 8.367 hybrid contribution -0.678 1.965 0.099 2.081 sum 1.887 -5.931 -0.947 6.295 Atomic orbital electron populations 1.70045 1.07157 1.27512 1.50459 1.25682 0.95588 1.02292 0.94467 0.85700 0.78465 0.79127 0.78943 1.19802 1.21136 1.19398 1.21095 0.93252 0.90175 1.49946 0.92657 1.18322 0.91431 0.89211 0.87471 0.98595 1.20417 0.92457 0.93514 0.98522 1.20845 0.99120 0.97570 0.93591 1.21510 0.96500 1.02149 0.96763 1.18306 0.92278 0.99059 0.87168 1.84733 1.91845 1.40993 1.14206 1.21397 0.99890 1.00464 0.95424 1.20897 0.96925 0.99583 0.96026 1.63611 1.41228 1.04221 1.16726 1.22671 0.99485 0.96132 0.88225 1.22717 0.98885 0.95561 0.98607 1.22738 0.98372 1.01527 0.94546 1.22785 0.96084 0.93525 0.96404 0.92889 0.86034 0.84075 0.73936 0.85009 0.88139 0.96590 0.91741 0.89908 0.89756 0.88747 0.92591 0.90923 0.95531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.77 12.86 21.45 0.28 -51.49 16 2 C 0.02 1.09 5.45 84.66 0.46 1.55 16 3 Si 0.95 43.08 29.54 68.60 2.03 45.11 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.51 -27.12 7.35 25.60 0.19 -26.94 16 8 H 0.06 2.99 7.82 -2.91 -0.02 2.97 16 9 C 0.24 12.05 1.29 43.42 0.06 12.11 16 10 H 0.00 -0.21 7.19 -2.39 -0.02 -0.23 16 11 C -0.05 -2.22 3.82 -19.85 -0.08 -2.29 16 12 C -0.09 -3.84 9.23 22.25 0.21 -3.63 16 13 C -0.15 -5.38 9.99 22.37 0.22 -5.16 16 14 C 0.08 2.67 6.71 22.51 0.15 2.83 16 15 O -0.51 -14.55 13.50 -92.49 -1.25 -15.80 16 16 C -0.15 -5.85 9.99 22.37 0.22 -5.63 16 17 C -0.12 -5.18 9.66 22.25 0.21 -4.97 16 18 N -0.53 -22.71 4.51 -869.18 -3.92 -26.63 16 19 C 0.06 2.48 5.75 86.77 0.50 2.98 16 20 C -0.12 -3.49 7.08 31.98 0.23 -3.27 16 21 C -0.13 -3.93 6.94 31.78 0.22 -3.71 16 22 C 0.04 1.47 6.32 86.65 0.55 2.02 16 23 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 24 H 0.12 5.01 7.91 -2.91 -0.02 4.99 16 25 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 26 H 0.40 7.53 9.06 -74.06 -0.67 6.86 16 27 H 0.13 4.40 8.06 -2.91 -0.02 4.38 16 28 H 0.10 4.85 7.99 -2.91 -0.02 4.82 16 29 H 0.02 0.71 7.73 -2.38 -0.02 0.69 16 30 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.08 2.19 8.14 -2.38 -0.02 2.18 16 33 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.03 1.06 7.18 -2.38 -0.02 1.05 16 Total: -1.00 -61.87 299.47 0.67 -61.20 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: 0.39 Total: 21.73 kcal Atomic # 6 Polarization: -37.26 SS G_CDS: 3.14 Total: -34.12 kcal Atomic # 7 Polarization: -74.48 SS G_CDS: -3.65 Total: -78.12 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -1.25 Total: -15.80 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -61.87 0.67 -61.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260113645.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.133 kcal (2) G-P(sol) polarization free energy of solvation -61.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds