Wall clock time and date at job start Mon Mar 30 2020 06:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46498 * 109.46946 * 2 1 4 4 C 1.36801 * 125.07338 * 90.00156 * 3 2 1 5 5 C 1.50694 * 125.03613 * 359.97438 * 4 3 2 6 6 C 1.50700 * 109.47101 * 265.01697 * 5 4 3 7 7 H 1.07998 * 119.99823 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00105 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99998 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00198 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46991 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47267 * 120.00120 * 10 8 6 13 13 H 1.48495 * 109.47365 * 240.00105 * 10 8 6 14 14 C 1.34245 * 109.92231 * 180.02562 * 4 3 2 15 15 C 1.46483 * 107.01193 * 359.97438 * 14 4 3 16 16 C 1.39701 * 134.00923 * 180.02562 * 15 14 4 17 17 C 1.36596 * 119.80712 * 180.02562 * 16 15 14 18 18 C 1.38833 * 120.54816 * 359.97438 * 17 16 15 19 19 C 1.37935 * 120.63736 * 0.02562 * 18 17 16 20 20 F 1.35104 * 120.13343 * 179.97438 * 19 18 17 21 21 C 1.37780 * 125.07286 * 270.31094 * 3 2 1 22 22 H 1.08996 * 109.47080 * 299.99570 * 1 2 3 23 23 H 1.08997 * 109.47283 * 60.00200 * 1 2 3 24 24 H 1.09008 * 109.46926 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47520 * 240.00267 * 2 1 3 26 26 H 1.09002 * 109.47720 * 119.99956 * 2 1 3 27 27 H 1.09004 * 109.47233 * 25.01476 * 5 4 3 28 28 H 1.09000 * 109.47076 * 145.01777 * 5 4 3 29 29 H 0.97003 * 120.00124 * 180.02562 * 9 8 6 30 30 H 1.08000 * 126.49409 * 179.97438 * 14 4 3 31 31 H 1.08002 * 120.09202 * 0.02562 * 16 15 14 32 32 H 1.08001 * 119.72665 * 180.02562 * 17 16 15 33 33 H 1.08003 * 119.68227 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2803 2.1223 1.1196 5 6 2.1089 1.6391 2.5366 6 6 0.7561 2.0597 3.0507 7 1 0.0873 2.6205 2.4146 8 6 0.3724 1.7287 4.3329 9 7 1.1872 1.0463 5.1076 10 14 -1.3041 2.2506 4.9704 11 1 -2.0242 3.0025 3.9113 12 1 -2.0891 1.0462 5.3426 13 1 -1.1320 3.1175 6.1636 14 6 2.7116 3.3442 0.7687 15 6 2.7277 3.3890 -0.6953 16 6 3.0730 4.3655 -1.6328 17 6 2.9753 4.0904 -2.9672 18 6 2.5358 2.8469 -3.4010 19 6 2.1896 1.8678 -2.4932 20 9 1.7627 0.6615 -2.9266 21 6 2.2763 2.1297 -1.1276 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.1851 0.5520 2.5616 28 1 2.8871 2.0725 3.1649 29 1 0.9171 0.8130 6.0096 30 1 2.9934 4.1429 1.4389 31 1 3.4161 5.3351 -1.3034 32 1 3.2430 4.8461 -3.6908 33 1 2.4636 2.6446 -4.4594 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260122103.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:02 Heat of formation + Delta-G solvation = -15.758135 kcal Electronic energy + Delta-G solvation = -17643.309315 eV Core-core repulsion = 14775.767155 eV Total energy + Delta-G solvation = -2867.542160 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.83636 -42.22484 -38.21099 -35.38479 -34.58908 -32.21778 -31.37029 -29.49049 -28.46643 -25.49323 -24.45508 -22.78681 -22.50528 -20.53556 -18.55439 -18.35595 -17.90147 -16.90926 -16.77612 -16.52103 -16.04616 -15.67137 -15.27225 -15.00934 -14.35702 -14.31235 -13.85357 -13.71422 -13.54638 -13.37743 -12.93339 -12.69443 -12.67272 -12.51016 -12.16946 -12.10813 -12.04884 -11.73754 -11.48269 -10.64463 -10.37922 -9.07310 -8.48708 -8.21647 -6.36651 0.08613 0.61687 1.37290 1.39130 1.51085 1.77705 1.90046 2.39323 2.87526 3.07643 3.31837 3.68701 3.75217 3.98205 4.06918 4.12192 4.27997 4.44959 4.48723 4.64502 4.73478 4.79327 4.90738 5.03001 5.13073 5.20949 5.25571 5.30562 5.34484 5.62907 5.67992 5.88164 6.03885 6.05974 6.34314 6.41803 6.72383 7.31865 8.84890 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.029610 B = 0.006675 C = 0.006061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.413825 B = 4193.715916 C = 4618.929378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.104 3.896 3 N -0.478 5.478 4 C 0.118 3.882 5 C 0.082 3.918 6 C -0.521 4.521 7 H 0.050 0.950 8 C 0.015 3.985 9 N -0.924 5.924 10 Si 0.960 3.040 11 H -0.270 1.270 12 H -0.276 1.276 13 H -0.275 1.275 14 C -0.242 4.242 15 C -0.099 4.099 16 C -0.086 4.086 17 C -0.119 4.119 18 C -0.135 4.135 19 C 0.063 3.937 20 F -0.151 7.151 21 C 0.033 3.967 22 H 0.048 0.952 23 H 0.051 0.949 24 H 0.094 0.906 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.014 0.986 28 H 0.025 0.975 29 H 0.267 0.733 30 H 0.148 0.852 31 H 0.148 0.852 32 H 0.170 0.830 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.881 2.574 -14.868 15.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.017 4.017 3 N -0.161 5.161 4 C 0.010 3.990 5 C 0.045 3.955 6 C -0.559 4.559 7 H 0.068 0.932 8 C -0.185 4.185 9 N -0.564 5.564 10 Si 0.785 3.215 11 H -0.194 1.194 12 H -0.201 1.201 13 H -0.200 1.200 14 C -0.266 4.266 15 C -0.104 4.104 16 C -0.104 4.104 17 C -0.137 4.137 18 C -0.155 4.155 19 C 0.042 3.958 20 F -0.130 7.130 21 C -0.073 4.073 22 H 0.067 0.933 23 H 0.071 0.929 24 H 0.113 0.887 25 H 0.115 0.885 26 H 0.102 0.898 27 H 0.032 0.968 28 H 0.043 0.957 29 H 0.076 0.924 30 H 0.165 0.835 31 H 0.166 0.834 32 H 0.187 0.813 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.766 2.098 -14.679 14.933 hybrid contribution -0.866 -0.346 0.937 1.322 sum 0.900 1.752 -13.742 13.883 Atomic orbital electron populations 1.22058 0.94162 1.03649 1.01780 1.21835 0.96155 0.79795 1.03874 1.44181 1.55843 1.12629 1.03427 1.21138 0.96634 0.91940 0.89273 1.17788 0.97161 0.95761 0.84824 1.21169 1.00714 1.35485 0.98527 0.93206 1.25760 1.01040 0.94844 0.96808 1.70050 1.37810 1.39600 1.08943 0.85470 0.79434 0.78281 0.78345 1.19429 1.20102 1.20043 1.21518 1.14542 0.97640 0.92856 1.19421 1.03915 0.93441 0.93657 1.20660 0.99099 0.98481 0.92197 1.20820 1.00908 0.96599 0.95423 1.21133 1.01895 0.92750 0.99685 1.16991 1.07240 0.83078 0.88519 1.91404 1.88321 1.43183 1.90070 1.18625 1.07136 0.93944 0.87608 0.93290 0.92945 0.88703 0.88534 0.89756 0.96827 0.95689 0.92380 0.83465 0.83447 0.81298 0.81942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.43 10.24 71.98 0.74 -4.69 16 2 C 0.10 3.75 6.29 86.38 0.54 4.29 16 3 N -0.48 -19.65 2.78 -501.34 -1.39 -21.04 16 4 C 0.12 5.40 6.02 40.87 0.25 5.64 16 5 C 0.08 4.27 5.18 29.10 0.15 4.42 16 6 C -0.52 -28.79 9.02 25.60 0.23 -28.56 16 7 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 8 C 0.01 0.80 5.46 84.66 0.46 1.26 16 9 N -0.92 -53.45 13.29 21.45 0.28 -53.17 16 10 Si 0.96 43.33 29.54 68.60 2.03 45.36 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 12 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 13 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 14 C -0.24 -10.16 10.95 23.51 0.26 -9.91 16 15 C -0.10 -3.65 6.37 -20.20 -0.13 -3.78 16 16 C -0.09 -2.37 10.05 22.24 0.22 -2.14 16 17 C -0.12 -2.62 9.97 22.03 0.22 -2.40 16 18 C -0.14 -3.32 9.99 22.34 0.22 -3.09 16 19 C 0.06 2.04 7.32 22.46 0.16 2.21 16 20 F -0.15 -4.79 15.83 44.97 0.71 -4.08 16 21 C 0.03 1.27 6.82 39.04 0.27 1.54 16 22 H 0.05 1.99 8.07 -2.39 -0.02 1.97 16 23 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.09 2.63 8.14 -2.38 -0.02 2.61 16 25 H 0.10 3.04 6.96 -2.39 -0.02 3.03 16 26 H 0.08 3.13 6.81 -2.39 -0.02 3.12 16 27 H 0.01 0.73 6.78 -2.38 -0.02 0.71 16 28 H 0.02 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 30 H 0.15 5.83 8.06 -2.91 -0.02 5.81 16 31 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 32 H 0.17 2.28 8.06 -2.91 -0.02 2.25 16 33 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -63.31 287.76 6.33 -56.98 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: 1.11 Total: 11.17 kcal Atomic # 6 Polarization: -38.81 SS G_CDS: 3.60 Total: -35.22 kcal Atomic # 7 Polarization: -73.10 SS G_CDS: -1.11 Total: -74.21 kcal Atomic # 9 Polarization: -4.79 SS G_CDS: 0.71 Total: -4.08 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -63.31 6.33 -56.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260122103.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.222 kcal (2) G-P(sol) polarization free energy of solvation -63.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds