Wall clock time and date at job start Mon Mar 30 2020 05:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35179 * 117.00433 * 2 1 4 4 N 1.30617 * 124.93194 * 180.29328 * 3 2 1 5 5 C 1.36150 * 108.71789 * 180.17618 * 4 3 2 6 6 C 1.40315 * 106.60147 * 359.59741 * 5 4 3 7 7 C 1.38519 * 119.82803 * 180.24486 * 6 5 4 8 8 C 1.38043 * 119.89505 * 359.97438 * 7 6 5 9 9 C 1.38610 * 120.46145 * 0.02562 * 8 7 6 10 10 C 1.37799 * 120.39746 * 359.95900 * 9 8 7 11 11 C 1.50695 * 120.13660 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.46719 * 265.01629 * 11 10 9 13 13 C 1.50705 * 109.47096 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00160 * 359.97438 * 13 12 11 15 15 C 1.37882 * 120.00156 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99615 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99983 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47338 * 89.99532 * 17 15 13 19 19 H 1.48504 * 109.47024 * 209.99766 * 17 15 13 20 20 H 1.48506 * 109.47070 * 329.99520 * 17 15 13 21 21 O 1.34384 * 124.92365 * 0.02562 * 3 2 1 22 22 H 1.09000 * 109.47430 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47241 * 300.00442 * 1 2 3 24 24 H 1.09000 * 109.46974 * 59.99990 * 1 2 3 25 25 H 1.07998 * 120.05105 * 180.02562 * 7 6 5 26 26 H 1.07995 * 119.76798 * 180.02562 * 8 7 6 27 27 H 1.08004 * 119.80599 * 179.97438 * 9 8 7 28 28 H 1.08995 * 109.47680 * 25.01385 * 11 10 9 29 29 H 1.08997 * 109.47185 * 145.01903 * 11 10 9 30 30 H 1.09004 * 109.47425 * 299.99725 * 12 11 10 31 31 H 1.08997 * 109.47068 * 60.00202 * 12 11 10 32 32 H 0.97000 * 119.99410 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0428 1.2044 0.0000 4 7 3.3364 1.3846 -0.0055 5 6 3.5914 2.7220 0.0004 6 6 2.3455 3.3676 0.0007 7 6 2.2867 4.7515 0.0010 8 6 3.4531 5.4897 0.0017 9 6 4.6859 4.8560 0.0015 10 6 4.7625 3.4801 0.0014 11 6 6.1058 2.7972 0.0018 12 6 6.5040 2.4545 -1.4352 13 6 7.8477 1.7721 -1.4350 14 1 8.3660 1.6004 -0.5033 15 6 8.4158 1.3678 -2.6245 16 7 7.7848 1.5774 -3.7593 17 14 10.0810 0.5214 -2.6242 18 1 9.8902 -0.9463 -2.5033 19 1 10.7911 0.8255 -3.8925 20 1 10.8855 1.0122 -1.4765 21 8 1.4104 2.3902 0.0005 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.3297 5.2521 0.0016 26 1 3.4049 6.5686 0.0024 27 1 5.5918 5.4440 0.0016 28 1 6.8517 3.4626 0.4365 29 1 6.0480 1.8820 0.5909 30 1 5.7582 1.7890 -1.8701 31 1 6.5618 3.3697 -2.0243 32 1 8.1843 1.2926 -4.5960 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260124030.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:33 Heat of formation + Delta-G solvation = -29.927317 kcal Electronic energy + Delta-G solvation = -17188.507032 eV Core-core repulsion = 14307.977661 eV Total energy + Delta-G solvation = -2880.529371 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.31985 -40.21383 -39.00276 -36.04533 -35.62606 -33.81760 -30.83159 -30.39825 -28.42091 -26.86182 -24.61615 -23.83154 -23.41228 -21.48601 -19.97938 -18.86041 -18.58127 -18.47066 -17.50880 -16.52427 -16.31640 -16.16220 -15.96946 -15.10168 -14.85222 -14.31826 -14.27087 -13.70773 -13.26234 -13.14903 -13.08530 -12.99855 -12.78808 -12.56464 -12.32274 -11.81282 -11.71837 -11.65289 -11.46931 -11.09404 -10.55857 -9.65388 -9.12774 -8.19065 -6.31259 -0.23599 0.23241 0.77088 1.39240 1.40545 1.42446 1.53334 1.75818 2.41470 2.67494 3.13497 3.45769 3.58599 3.99060 4.08324 4.18829 4.21053 4.24857 4.36190 4.54349 4.60006 4.70547 4.84291 4.96757 5.10723 5.20386 5.32974 5.43336 5.49938 5.61735 5.79182 5.82500 5.84432 6.22963 6.62440 6.84642 7.37555 8.93050 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.022544 B = 0.005974 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.718859 B = 4685.540688 C = 5608.610495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.257 6.257 3 C 0.417 3.583 4 N -0.513 5.513 5 C 0.012 3.988 6 C -0.012 4.012 7 C -0.092 4.092 8 C -0.078 4.078 9 C -0.117 4.117 10 C -0.044 4.044 11 C -0.061 4.061 12 C 0.045 3.955 13 C -0.542 4.542 14 H 0.062 0.938 15 C -0.002 4.002 16 N -0.936 5.936 17 Si 0.970 3.030 18 H -0.276 1.276 19 H -0.278 1.278 20 H -0.258 1.258 21 O -0.235 6.235 22 H 0.151 0.849 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.172 0.828 26 H 0.189 0.811 27 H 0.155 0.845 28 H 0.079 0.921 29 H 0.047 0.953 30 H -0.024 1.024 31 H -0.004 1.004 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.326 5.997 9.068 19.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.165 6.165 3 C 0.168 3.832 4 N -0.259 5.259 5 C -0.098 4.098 6 C -0.061 4.061 7 C -0.110 4.110 8 C -0.095 4.095 9 C -0.136 4.136 10 C -0.045 4.045 11 C -0.098 4.098 12 C 0.008 3.992 13 C -0.580 4.580 14 H 0.080 0.920 15 C -0.199 4.199 16 N -0.576 5.576 17 Si 0.793 3.207 18 H -0.202 1.202 19 H -0.204 1.204 20 H -0.182 1.182 21 O -0.131 6.131 22 H 0.169 0.831 23 H 0.099 0.901 24 H 0.093 0.907 25 H 0.189 0.811 26 H 0.207 0.793 27 H 0.173 0.827 28 H 0.098 0.902 29 H 0.066 0.934 30 H -0.006 1.006 31 H 0.014 0.986 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.899 5.244 8.889 18.955 hybrid contribution 0.032 -0.579 -0.472 0.748 sum -15.867 4.665 8.418 18.558 Atomic orbital electron populations 1.23749 0.72344 1.07952 1.03974 1.86391 1.26579 1.14932 1.88595 1.23512 0.85431 0.80256 0.93986 1.70846 1.10321 1.17938 1.26791 1.19744 0.95577 0.87703 1.06814 1.20418 0.85451 0.91578 1.08617 1.20296 1.02019 0.85439 1.03288 1.21493 0.89319 1.02004 0.96727 1.21349 1.00611 0.91629 1.00043 1.19626 0.92734 0.94150 0.98036 1.20476 0.91976 0.98919 0.98470 1.18814 0.94591 0.94526 0.91314 1.21683 1.04488 1.38549 0.93302 0.91973 1.26037 1.02221 0.96626 0.95043 1.70131 1.40529 1.48494 0.98432 0.85385 0.78679 0.78548 0.78048 1.20155 1.20360 1.18222 1.84360 1.36957 1.14660 1.77161 0.83131 0.90125 0.90733 0.81053 0.79350 0.82688 0.90202 0.93415 1.00553 0.98575 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 10.70 113.37 1.21 1.42 16 2 O -0.26 -7.59 10.54 -62.32 -0.66 -8.24 16 3 C 0.42 15.13 8.93 130.42 1.16 16.29 16 4 N -0.51 -23.14 11.37 -422.75 -4.81 -27.95 16 5 C 0.01 0.50 6.93 39.29 0.27 0.77 16 6 C -0.01 -0.40 7.42 22.84 0.17 -0.23 16 7 C -0.09 -2.21 10.06 22.29 0.22 -1.99 16 8 C -0.08 -1.72 10.03 22.31 0.22 -1.49 16 9 C -0.12 -3.54 9.66 22.25 0.21 -3.33 16 10 C -0.04 -1.80 5.16 -19.66 -0.10 -1.90 16 11 C -0.06 -2.86 5.30 29.85 0.16 -2.70 16 12 C 0.04 2.59 4.96 29.85 0.15 2.74 16 13 C -0.54 -33.01 9.11 25.60 0.23 -32.78 16 14 H 0.06 3.60 7.74 -2.91 -0.02 3.58 16 15 C 0.00 -0.12 5.46 84.66 0.46 0.35 16 16 N -0.94 -60.12 13.29 21.45 0.28 -59.83 16 17 Si 0.97 46.35 29.54 68.60 2.03 48.38 16 18 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 20 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 21 O -0.23 -7.54 10.20 9.17 0.09 -7.45 16 22 H 0.15 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.17 2.64 8.06 -2.91 -0.02 2.62 16 26 H 0.19 2.25 8.06 -2.91 -0.02 2.23 16 27 H 0.16 3.99 8.06 -2.91 -0.02 3.97 16 28 H 0.08 3.35 8.05 -2.39 -0.02 3.33 16 29 H 0.05 2.36 8.12 -2.39 -0.02 2.34 16 30 H -0.02 -1.59 8.14 -2.39 -0.02 -1.61 16 31 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 32 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -81.07 287.08 2.44 -78.63 By element: Atomic # 1 Polarization: -1.81 SS G_CDS: 1.12 Total: -0.69 kcal Atomic # 6 Polarization: -27.23 SS G_CDS: 4.38 Total: -22.85 kcal Atomic # 7 Polarization: -83.26 SS G_CDS: -4.52 Total: -87.78 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.56 Total: -15.69 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -81.07 2.44 -78.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260124030.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.700 kcal (2) G-P(sol) polarization free energy of solvation -81.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds