Wall clock time and date at job start Mon Mar 30 2020 05:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29830 * 126.29045 * 2 1 4 4 O 1.41416 * 109.80279 * 180.02562 * 3 2 1 5 5 C 1.34439 * 109.33963 * 0.02562 * 4 3 2 6 6 C 1.38808 * 134.54712 * 180.31184 * 5 4 3 7 7 C 1.38714 * 118.86286 * 180.19198 * 6 5 4 8 8 N 1.38915 * 119.38566 * 179.73298 * 7 6 5 9 9 C 1.46499 * 119.99807 * 359.72212 * 8 7 6 10 10 C 1.52992 * 109.47267 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.47257 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99988 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00042 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00041 * 0.02562 * 13 11 10 15 15 Si 1.86809 * 120.00110 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46667 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46924 * 120.00054 * 15 13 11 18 18 H 1.48500 * 109.47133 * 240.00308 * 15 13 11 19 19 N 1.32836 * 121.23522 * 359.44931 * 7 6 5 20 20 C 1.31658 * 122.11261 * 0.27892 * 19 7 6 21 21 C 1.39375 * 120.27838 * 0.02562 * 20 19 7 22 22 H 1.09010 * 109.47081 * 269.95936 * 1 2 3 23 23 H 1.08994 * 109.46857 * 29.95377 * 1 2 3 24 24 H 1.08999 * 109.47362 * 149.95787 * 1 2 3 25 25 H 1.08002 * 120.57186 * 359.94063 * 6 5 4 26 26 H 0.96999 * 120.00209 * 179.72711 * 8 7 6 27 27 H 1.09004 * 109.47024 * 300.00657 * 9 8 7 28 28 H 1.09005 * 109.47136 * 60.00273 * 9 8 7 29 29 H 1.09004 * 109.47330 * 300.00096 * 10 9 8 30 30 H 1.09005 * 109.47124 * 59.99892 * 10 9 8 31 31 H 0.97000 * 119.99706 * 179.97438 * 14 13 11 32 32 H 1.08003 * 119.85931 * 180.02562 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2754 1.0465 0.0000 4 8 3.6314 0.6451 -0.0006 5 6 3.6983 -0.6976 -0.0015 6 6 4.7348 -1.6209 0.0030 7 6 4.4267 -2.9734 -0.0040 8 7 5.4556 -3.9068 -0.0052 9 6 6.8505 -3.4594 -0.0054 10 6 7.7767 -4.6771 -0.0075 11 6 9.2117 -4.2167 -0.0069 12 1 9.4402 -3.1612 -0.0049 13 6 10.2329 -5.1431 -0.0080 14 7 9.9546 -6.4285 -0.0101 15 14 12.0117 -4.5726 -0.0081 16 1 12.0553 -3.0882 -0.0063 17 1 12.6972 -5.0890 1.2037 18 1 12.6965 -5.0869 -1.2213 19 7 3.1663 -3.3928 -0.0039 20 6 2.1502 -2.5557 -0.0027 21 6 2.3731 -1.1799 -0.0020 22 1 -0.3634 -0.0007 1.0278 23 1 -0.3633 0.8904 -0.5131 24 1 -0.3634 -0.8896 -0.5145 25 1 5.7635 -1.2920 0.0077 26 1 5.2503 -4.8549 -0.0061 27 1 7.0392 -2.8582 -0.8948 28 1 7.0399 -2.8599 0.8852 29 1 7.5882 -5.2786 0.8818 30 1 7.5873 -5.2762 -0.8982 31 1 10.6731 -7.0802 -0.0112 32 1 1.1396 -2.9367 -0.0022 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260131127.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:12 Heat of formation + Delta-G solvation = 43.334830 kcal Electronic energy + Delta-G solvation = -16643.755200 eV Core-core repulsion = 13798.695465 eV Total energy + Delta-G solvation = -2845.059735 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.92009 -40.29844 -37.34505 -35.65616 -34.99164 -32.60268 -32.14115 -29.79757 -29.53231 -26.77295 -25.06279 -23.74127 -22.74175 -21.44683 -19.30799 -18.61613 -18.43991 -17.31510 -17.24037 -16.61514 -16.15031 -16.03153 -15.43214 -15.36865 -14.60790 -14.31237 -14.25452 -14.23486 -13.70546 -13.26281 -13.07633 -13.04353 -12.50402 -12.47607 -12.34535 -11.81761 -11.64414 -11.39079 -11.09415 -10.79404 -10.60505 -10.39608 -8.85883 -8.25838 -6.36701 -0.35383 0.19276 1.03834 1.29869 1.40741 1.42157 1.54534 2.10008 2.42027 2.67365 3.06804 3.09799 3.17292 3.48972 3.74182 3.90793 4.28307 4.33648 4.43802 4.55040 4.58891 4.75542 4.78933 4.85916 4.89649 5.14737 5.29611 5.38683 5.53879 5.66399 5.85190 6.11623 6.13927 6.47436 6.78096 6.97682 7.33328 8.86518 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.049683 B = 0.003917 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.433553 B = 7146.511426 C = 7684.194018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.177 3.823 3 N -0.339 5.339 4 O -0.134 6.134 5 C 0.145 3.855 6 C -0.282 4.282 7 C 0.444 3.556 8 N -0.700 5.700 9 C 0.142 3.858 10 C 0.021 3.979 11 C -0.543 4.543 12 H 0.066 0.934 13 C 0.005 3.995 14 N -0.929 5.929 15 Si 0.966 3.034 16 H -0.262 1.262 17 H -0.279 1.279 18 H -0.279 1.279 19 N -0.569 5.569 20 C 0.260 3.740 21 C -0.328 4.328 22 H 0.117 0.883 23 H 0.095 0.905 24 H 0.122 0.878 25 H 0.140 0.860 26 H 0.411 0.589 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.005 0.995 30 H 0.005 0.995 31 H 0.265 0.735 32 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.808 8.835 0.060 21.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.004 4.004 3 N -0.092 5.092 4 O -0.134 6.134 5 C 0.085 3.915 6 C -0.310 4.310 7 C 0.209 3.791 8 N -0.327 5.327 9 C 0.018 3.982 10 C -0.017 4.017 11 C -0.582 4.582 12 H 0.084 0.916 13 C -0.194 4.194 14 N -0.568 5.568 15 Si 0.790 3.210 16 H -0.186 1.186 17 H -0.205 1.205 18 H -0.205 1.205 19 N -0.287 5.287 20 C 0.093 3.907 21 C -0.337 4.337 22 H 0.135 0.865 23 H 0.114 0.886 24 H 0.140 0.860 25 H 0.158 0.842 26 H 0.247 0.753 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.023 0.977 30 H 0.024 0.976 31 H 0.074 0.926 32 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -19.309 9.186 0.057 21.383 hybrid contribution 1.633 -0.200 0.000 1.645 sum -17.676 8.986 0.058 19.829 Atomic orbital electron populations 1.20811 0.80310 1.06787 1.06386 1.25224 0.99823 0.87778 0.87567 1.79906 0.83981 1.19525 1.25786 1.89040 1.24981 1.17577 1.81817 1.20159 0.95896 0.84956 0.90508 1.20014 0.99187 0.89876 1.21909 1.18205 0.87431 0.86687 0.86740 1.44981 1.03784 1.08025 1.75878 1.21523 0.77569 0.98346 1.00743 1.19124 0.93496 0.92845 0.96238 1.21493 0.91709 0.93648 1.51330 0.91567 1.25903 1.04101 0.94904 0.94474 1.70080 1.34069 1.01580 1.51091 0.85383 0.78922 0.78930 0.77729 1.18553 1.20462 1.20454 1.67454 0.97944 1.39270 1.24067 1.22882 0.98935 0.85422 0.83487 1.21660 0.90947 0.97535 1.23593 0.86522 0.88645 0.85970 0.84250 0.75264 0.92036 0.92024 0.97654 0.97648 0.92597 0.76391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.63 10.48 71.24 0.75 0.12 16 2 C 0.18 3.59 7.46 44.97 0.34 3.93 16 3 N -0.34 -9.58 12.81 -43.58 -0.56 -10.14 16 4 O -0.13 -4.52 12.05 33.55 0.40 -4.12 16 5 C 0.15 4.60 7.55 23.09 0.17 4.78 16 6 C -0.28 -9.26 9.32 22.52 0.21 -9.05 16 7 C 0.44 14.39 7.63 132.86 1.01 15.40 16 8 N -0.70 -24.18 5.72 -345.19 -1.98 -26.15 16 9 C 0.14 5.53 4.81 86.38 0.42 5.94 16 10 C 0.02 1.00 5.09 29.85 0.15 1.16 16 11 C -0.54 -29.30 9.11 25.60 0.23 -29.07 16 12 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 13 C 0.00 0.27 5.46 84.65 0.46 0.73 16 14 N -0.93 -54.28 13.29 21.45 0.28 -53.99 16 15 Si 0.97 42.88 29.54 68.60 2.03 44.91 16 16 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 17 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 18 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 19 N -0.57 -15.95 10.36 -192.51 -1.99 -17.94 16 20 C 0.26 5.37 11.26 84.99 0.96 6.32 16 21 C -0.33 -7.96 6.36 -20.21 -0.13 -8.09 16 22 H 0.12 0.45 8.14 -2.38 -0.02 0.44 16 23 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 25 H 0.14 4.62 6.66 -2.91 -0.02 4.60 16 26 H 0.41 13.79 8.59 -92.71 -0.80 12.99 16 27 H 0.06 2.36 7.92 -2.38 -0.02 2.34 16 28 H 0.06 2.37 7.90 -2.38 -0.02 2.35 16 29 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 30 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 31 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 32 H 0.22 2.00 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -68.48 285.52 3.11 -65.37 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 0.35 Total: 9.90 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: 4.57 Total: -7.83 kcal Atomic # 7 Polarization: -103.99 SS G_CDS: -4.24 Total: -108.23 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: 0.40 Total: -4.12 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -68.48 3.11 -65.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260131127.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.704 kcal (2) G-P(sol) polarization free energy of solvation -68.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds