Wall clock time and date at job start Mon Mar 30 2020 05:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35803 * 116.99930 * 2 1 4 4 C 1.39113 * 120.17025 * 269.98253 * 3 2 1 5 5 O 1.36009 * 119.99930 * 0.04119 * 4 3 2 6 6 C 1.38476 * 119.99877 * 179.76936 * 4 3 2 7 7 C 1.38511 * 120.33819 * 0.50639 * 6 4 3 8 8 C 1.50697 * 119.83394 * 179.76389 * 7 6 4 9 9 C 1.52997 * 109.47466 * 269.72642 * 8 7 6 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47294 * 60.00559 * 14 12 10 16 16 H 1.48503 * 109.46954 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47431 * 300.00157 * 14 12 10 18 18 C 1.37788 * 120.33599 * 359.49051 * 7 6 4 19 19 C 1.39812 * 119.99420 * 0.24978 * 18 7 6 20 20 C 1.43200 * 120.16449 * 180.02562 * 19 18 7 21 21 N 3.53132 * 95.80951 * 78.42412 * 2 1 3 22 22 H 1.09001 * 109.46846 * 59.99522 * 1 2 3 23 23 H 1.09000 * 109.46840 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47035 * 299.99870 * 1 2 3 25 25 H 0.96691 * 113.99401 * 90.00163 * 5 4 3 26 26 H 1.08000 * 119.83357 * 180.27461 * 6 4 3 27 27 H 1.09002 * 109.47120 * 149.72395 * 8 7 6 28 28 H 1.08998 * 109.46862 * 29.73197 * 8 7 6 29 29 H 1.09002 * 109.47153 * 59.99773 * 9 8 7 30 30 H 1.09001 * 109.46832 * 299.99964 * 9 8 7 31 31 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 32 32 H 1.07998 * 120.00296 * 180.27542 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 2.3633 1.8328 -1.2027 5 8 2.0557 1.2302 -2.3826 6 6 2.9876 3.0688 -1.1985 7 6 3.3084 3.6866 -0.0011 8 6 3.9925 5.0293 -0.0098 9 6 5.5093 4.8289 -0.0123 10 6 6.1935 6.1716 -0.0218 11 1 5.6052 7.0774 -0.0252 12 6 7.5704 6.2438 -0.0250 13 7 8.2866 5.1408 -0.0203 14 14 8.4183 7.9082 -0.0359 15 1 8.0218 8.6737 1.1733 16 1 9.8905 7.7136 -0.0385 17 1 8.0168 8.6604 -1.2518 18 6 3.0001 3.0823 1.1982 19 6 2.3649 1.8369 1.2104 20 6 2.0423 1.2058 2.4547 21 7 1.7865 0.7050 3.4417 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.1799 1.4575 -2.7236 26 1 3.2291 3.5519 -2.1338 27 1 3.7017 5.5911 0.8778 28 1 3.6975 5.5815 -0.9020 29 1 5.8002 4.2671 -0.9000 30 1 5.8043 4.2766 0.8800 31 1 9.2553 5.1916 -0.0229 32 1 3.2486 3.5709 2.1288 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260139040.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:14 Heat of formation + Delta-G solvation = -38.406297 kcal Electronic energy + Delta-G solvation = -16859.647341 eV Core-core repulsion = 13978.750294 eV Total energy + Delta-G solvation = -2880.897047 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.52251 -37.79596 -37.31277 -36.22527 -33.80900 -32.00368 -30.34943 -28.97834 -27.09454 -24.87476 -23.97799 -22.24263 -20.87752 -18.72142 -17.63118 -17.49414 -16.60526 -16.33671 -15.82146 -14.67384 -14.52755 -14.38841 -14.30536 -13.71771 -13.29160 -12.96881 -12.91887 -12.63964 -12.17490 -12.02882 -11.86810 -11.76190 -11.22017 -10.94823 -10.88578 -10.62467 -10.05102 -9.95537 -9.69143 -9.20625 -8.81814 -8.40185 -8.31855 -6.04809 -4.08911 0.67302 1.10799 2.66771 2.92146 3.30485 3.35912 3.36937 3.37995 3.73201 3.80420 4.19235 4.41807 4.91787 5.01931 5.06769 5.16393 5.28871 5.31081 5.36868 5.44680 5.58607 6.08059 6.13063 6.17075 6.43577 6.55840 6.68994 6.90761 7.09260 7.48631 7.59186 7.62949 7.69764 7.92967 8.31973 8.97605 9.55832 11.06016 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.032460 B = 0.004804 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.383513 B = 5827.366872 C = 6333.951020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.325 6.325 3 C 0.095 3.905 4 C 0.090 3.910 5 O -0.482 6.482 6 C -0.100 4.100 7 C -0.044 4.044 8 C -0.081 4.081 9 C 0.027 3.973 10 C -0.526 4.526 11 H 0.056 0.944 12 C 0.059 3.941 13 N -0.892 5.892 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.065 4.065 19 C -0.037 4.037 20 C 0.267 3.733 21 N -0.421 5.421 22 H 0.047 0.953 23 H 0.095 0.905 24 H 0.044 0.956 25 H 0.384 0.616 26 H 0.143 0.857 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.020 0.980 30 H 0.020 0.980 31 H 0.262 0.738 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.925 -5.222 -3.117 17.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.241 6.241 3 C 0.048 3.952 4 C 0.045 3.955 5 O -0.291 6.291 6 C -0.120 4.120 7 C -0.044 4.044 8 C -0.119 4.119 9 C -0.010 4.010 10 C -0.565 4.565 11 H 0.075 0.925 12 C -0.143 4.143 13 N -0.531 5.531 14 Si 0.720 3.280 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.085 4.085 19 C -0.041 4.041 20 C -0.048 4.048 21 N -0.096 5.096 22 H 0.066 0.934 23 H 0.114 0.886 24 H 0.063 0.937 25 H 0.239 0.761 26 H 0.161 0.839 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.039 0.961 30 H 0.038 0.962 31 H 0.072 0.928 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -15.500 -6.506 -1.528 16.879 hybrid contribution 0.142 1.299 -0.488 1.395 sum -15.358 -5.207 -2.016 16.342 Atomic orbital electron populations 1.23003 0.78975 1.03444 1.00475 1.86084 1.19743 1.24080 1.94206 1.18839 0.98706 0.86967 0.90659 1.18463 1.01126 0.91522 0.84402 1.84957 1.38961 1.70339 1.34856 1.21578 0.97587 0.93115 0.99686 1.20266 0.94491 0.98483 0.91172 1.20935 0.98957 0.89770 1.02194 1.19120 0.86539 0.97411 0.97896 1.21164 0.91382 0.92456 1.51460 0.92527 1.25015 0.97645 0.96462 0.95156 1.69953 1.06020 1.26951 1.50162 0.86651 0.78422 0.84252 0.78629 1.20213 1.21285 1.20201 1.21121 0.95827 0.91996 0.99592 1.16224 1.06442 0.95348 0.86108 1.25403 0.93575 0.93188 0.92643 1.81184 1.08996 1.08465 1.10998 0.93435 0.88631 0.93703 0.76072 0.83949 0.91435 0.91426 0.96139 0.96187 0.92807 0.84092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 11.13 101.05 1.12 1.44 16 2 O -0.32 -4.35 9.63 -33.67 -0.32 -4.68 16 3 C 0.10 1.32 5.74 -38.60 -0.22 1.09 16 4 C 0.09 1.19 6.71 -39.17 -0.26 0.93 16 5 O -0.48 -5.58 13.29 -34.32 -0.46 -6.04 16 6 C -0.10 -1.39 9.61 -39.39 -0.38 -1.77 16 7 C -0.04 -0.67 5.13 -104.69 -0.54 -1.20 16 8 C -0.08 -1.44 5.27 -27.89 -0.15 -1.59 16 9 C 0.03 0.65 4.95 -27.88 -0.14 0.51 16 10 C -0.53 -14.03 9.11 -34.44 -0.31 -14.34 16 11 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 13 N -0.89 -26.13 13.29 55.43 0.74 -25.40 16 14 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 C -0.06 -0.93 9.39 -39.16 -0.37 -1.30 16 19 C -0.04 -0.53 5.75 -106.72 -0.61 -1.14 16 20 C 0.27 4.03 14.87 -22.47 -0.33 3.70 16 21 N -0.42 -6.91 18.54 41.84 0.78 -6.14 16 22 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 23 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.38 2.34 9.06 45.56 0.41 2.76 16 26 H 0.14 1.82 8.06 -52.49 -0.42 1.40 16 27 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 28 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.14 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 296.83 15.07 4.47 4.47 Total: -1.00 -31.81 296.83 -5.03 -36.84 By element: Atomic # 1 Polarization: 0.09 SS G_CDS: -2.93 Total: -2.83 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -2.29 Total: -12.13 kcal Atomic # 7 Polarization: -33.05 SS G_CDS: 1.51 Total: -31.53 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: -0.78 Total: -10.71 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.81 -5.03 -36.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260139040.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.566 kcal (2) G-P(sol) polarization free energy of solvation -31.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds