Wall clock time and date at job start Mon Mar 30 2020 05:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35803 * 116.99930 * 2 1 4 4 C 1.39113 * 120.17025 * 269.98253 * 3 2 1 5 5 O 1.36009 * 119.99930 * 0.04119 * 4 3 2 6 6 C 1.38476 * 119.99877 * 179.76936 * 4 3 2 7 7 C 1.38511 * 120.33819 * 0.50639 * 6 4 3 8 8 C 1.50697 * 119.83394 * 179.76389 * 7 6 4 9 9 C 1.52997 * 109.47466 * 269.72642 * 8 7 6 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47294 * 60.00559 * 14 12 10 16 16 H 1.48503 * 109.46954 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47431 * 300.00157 * 14 12 10 18 18 C 1.37788 * 120.33599 * 359.49051 * 7 6 4 19 19 C 1.39812 * 119.99420 * 0.24978 * 18 7 6 20 20 C 1.43200 * 120.16449 * 180.02562 * 19 18 7 21 21 N 3.53132 * 95.80951 * 78.42412 * 2 1 3 22 22 H 1.09001 * 109.46846 * 59.99522 * 1 2 3 23 23 H 1.09000 * 109.46840 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47035 * 299.99870 * 1 2 3 25 25 H 0.96691 * 113.99401 * 90.00163 * 5 4 3 26 26 H 1.08000 * 119.83357 * 180.27461 * 6 4 3 27 27 H 1.09002 * 109.47120 * 149.72395 * 8 7 6 28 28 H 1.08998 * 109.46862 * 29.73197 * 8 7 6 29 29 H 1.09002 * 109.47153 * 59.99773 * 9 8 7 30 30 H 1.09001 * 109.46832 * 299.99964 * 9 8 7 31 31 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 32 32 H 1.07998 * 120.00296 * 180.27542 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 2.3633 1.8328 -1.2027 5 8 2.0557 1.2302 -2.3826 6 6 2.9876 3.0688 -1.1985 7 6 3.3084 3.6866 -0.0011 8 6 3.9925 5.0293 -0.0098 9 6 5.5093 4.8289 -0.0123 10 6 6.1935 6.1716 -0.0218 11 1 5.6052 7.0774 -0.0252 12 6 7.5704 6.2438 -0.0250 13 7 8.2866 5.1408 -0.0203 14 14 8.4183 7.9082 -0.0359 15 1 8.0218 8.6737 1.1733 16 1 9.8905 7.7136 -0.0385 17 1 8.0168 8.6604 -1.2518 18 6 3.0001 3.0823 1.1982 19 6 2.3649 1.8369 1.2104 20 6 2.0423 1.2058 2.4547 21 7 1.7865 0.7050 3.4417 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.1799 1.4575 -2.7236 26 1 3.2291 3.5519 -2.1338 27 1 3.7017 5.5911 0.8778 28 1 3.6975 5.5815 -0.9020 29 1 5.8002 4.2671 -0.9000 30 1 5.8043 4.2766 0.8800 31 1 9.2553 5.1916 -0.0229 32 1 3.2486 3.5709 2.1288 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260139040.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:14 Heat of formation + Delta-G solvation = -58.783758 kcal Electronic energy + Delta-G solvation = -16860.530974 eV Core-core repulsion = 13978.750294 eV Total energy + Delta-G solvation = -2881.780680 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.57142 -38.83178 -38.35860 -37.42102 -35.56179 -33.63499 -31.53378 -30.31682 -28.12286 -26.48728 -25.08264 -23.67202 -22.30453 -19.85442 -18.68531 -18.52772 -18.32751 -17.69019 -16.77824 -16.47298 -15.61476 -15.48585 -15.24537 -14.89269 -14.63191 -14.51121 -14.30897 -14.09755 -13.58088 -13.36346 -13.07893 -12.74908 -12.72626 -12.59784 -12.37324 -12.03248 -11.65487 -11.46780 -11.17070 -10.93315 -10.49142 -9.90790 -9.48775 -8.14111 -6.25036 -0.43633 0.04991 1.45689 1.47352 1.47603 1.55270 1.76219 2.38490 2.46104 2.61166 2.74021 3.20092 3.20511 3.90190 3.95602 4.26082 4.28627 4.36189 4.39222 4.49369 4.73146 4.82756 4.92039 4.97664 5.08197 5.19667 5.41096 5.53260 5.59441 5.83901 5.91772 6.20478 6.28446 6.31901 6.85199 6.93332 7.44618 8.97015 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.032460 B = 0.004804 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.383513 B = 5827.366872 C = 6333.951020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.345 6.345 3 C 0.103 3.897 4 C 0.098 3.902 5 O -0.489 6.489 6 C -0.095 4.095 7 C -0.059 4.059 8 C -0.066 4.066 9 C 0.030 3.970 10 C -0.540 4.540 11 H 0.067 0.933 12 C 0.000 4.000 13 N -0.935 5.935 14 Si 0.961 3.039 15 H -0.267 1.267 16 H -0.289 1.289 17 H -0.265 1.265 18 C -0.062 4.062 19 C -0.045 4.045 20 C 0.281 3.719 21 N -0.448 5.448 22 H 0.073 0.927 23 H 0.113 0.887 24 H 0.042 0.958 25 H 0.410 0.590 26 H 0.153 0.847 27 H 0.076 0.924 28 H 0.080 0.920 29 H -0.006 1.006 30 H -0.008 1.008 31 H 0.262 0.738 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.283 -4.594 -3.983 18.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.262 6.262 3 C 0.056 3.944 4 C 0.052 3.948 5 O -0.302 6.302 6 C -0.114 4.114 7 C -0.060 4.060 8 C -0.103 4.103 9 C -0.008 4.008 10 C -0.578 4.578 11 H 0.086 0.914 12 C -0.198 4.198 13 N -0.575 5.575 14 Si 0.786 3.214 15 H -0.192 1.192 16 H -0.215 1.215 17 H -0.190 1.190 18 C -0.083 4.083 19 C -0.050 4.050 20 C -0.033 4.033 21 N -0.124 5.124 22 H 0.092 0.908 23 H 0.131 0.869 24 H 0.061 0.939 25 H 0.269 0.731 26 H 0.171 0.829 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.013 0.987 30 H 0.010 0.990 31 H 0.070 0.930 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -16.906 -5.868 -2.405 18.056 hybrid contribution 0.470 0.998 -0.286 1.140 sum -16.436 -4.869 -2.691 17.352 Atomic orbital electron populations 1.23287 0.76562 1.05067 1.01665 1.86036 1.22076 1.23807 1.94308 1.18955 0.98052 0.86801 0.90626 1.18331 1.00626 0.91015 0.84801 1.84900 1.41112 1.70179 1.33974 1.21677 0.96854 0.93358 0.99556 1.19991 0.96072 0.97801 0.92108 1.20632 0.94742 0.91692 1.03265 1.18994 0.90953 0.95580 0.95228 1.21706 0.91917 0.93967 1.50190 0.91432 1.25940 0.98713 1.00161 0.94957 1.70101 1.06151 1.29394 1.51844 0.85566 0.76910 0.79723 0.79237 1.19212 1.21518 1.18977 1.21136 0.95454 0.92044 0.99639 1.16192 1.07281 0.95494 0.85986 1.25499 0.92790 0.92550 0.92485 1.81190 1.10111 1.09395 1.11705 0.90841 0.86907 0.93925 0.73066 0.82943 0.90567 0.90175 0.98735 0.98987 0.92978 0.83626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.13 113.37 1.26 1.69 16 2 O -0.35 -8.60 9.63 -77.43 -0.75 -9.35 16 3 C 0.10 2.67 5.74 22.91 0.13 2.80 16 4 C 0.10 2.38 6.71 22.54 0.15 2.53 16 5 O -0.49 -9.95 13.29 -79.75 -1.06 -11.01 16 6 C -0.10 -2.49 9.61 22.39 0.22 -2.27 16 7 C -0.06 -1.75 5.13 -19.91 -0.10 -1.86 16 8 C -0.07 -2.30 5.27 29.85 0.16 -2.14 16 9 C 0.03 1.44 4.95 29.85 0.15 1.58 16 10 C -0.54 -28.77 9.11 25.60 0.23 -28.54 16 11 H 0.07 3.37 7.74 -2.91 -0.02 3.34 16 12 C 0.00 0.00 5.46 84.66 0.46 0.46 16 13 N -0.93 -55.85 13.29 21.45 0.28 -55.57 16 14 Si 0.96 42.75 29.54 68.60 2.03 44.77 16 15 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 16 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 17 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 18 C -0.06 -1.74 9.39 22.54 0.21 -1.53 16 19 C -0.05 -1.25 5.75 -21.23 -0.12 -1.37 16 20 C 0.28 8.34 14.87 88.33 1.31 9.66 16 21 N -0.45 -14.56 18.54 19.00 0.35 -14.21 16 22 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.11 1.36 8.14 -2.39 -0.02 1.35 16 24 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.41 3.58 9.06 -74.06 -0.67 2.91 16 26 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 27 H 0.08 2.49 8.08 -2.39 -0.02 2.47 16 28 H 0.08 2.56 8.08 -2.39 -0.02 2.54 16 29 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 30 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 31 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 32 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -68.36 296.83 5.39 -62.97 By element: Atomic # 1 Polarization: 0.90 SS G_CDS: 0.47 Total: 1.38 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: 4.06 Total: -18.98 kcal Atomic # 7 Polarization: -70.42 SS G_CDS: 0.64 Total: -69.78 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -1.81 Total: -20.36 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -68.36 5.39 -62.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260139040.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.183 kcal (2) G-P(sol) polarization free energy of solvation -68.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds