Wall clock time and date at job start Mon Mar 30 2020 05:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35994 * 116.99931 * 2 1 4 4 C 1.38162 * 120.00324 * 359.72724 * 3 2 1 5 5 C 1.39745 * 119.84615 * 179.77027 * 4 3 2 6 6 C 1.43201 * 120.07678 * 180.25185 * 5 4 3 7 7 N 5.84106 * 81.26369 * 359.97438 * 2 1 3 8 8 C 1.39725 * 119.84784 * 0.47573 * 5 4 3 9 9 C 1.37818 * 119.99799 * 359.77787 * 8 5 4 10 10 C 1.50695 * 119.92764 * 179.97438 * 9 8 5 11 11 C 1.50692 * 109.47491 * 265.02077 * 10 9 8 12 12 H 1.08002 * 120.00080 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00329 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99797 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00246 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.46974 * 90.00237 * 15 13 11 17 17 H 1.48497 * 109.47031 * 210.00290 * 15 13 11 18 18 H 1.48501 * 109.46901 * 330.00261 * 15 13 11 19 19 C 1.38808 * 120.15252 * 359.97438 * 9 8 5 20 20 O 1.35846 * 119.92297 * 179.97438 * 19 9 8 21 21 C 1.42899 * 117.00214 * 269.98137 * 20 19 9 22 22 H 1.09001 * 109.47103 * 300.00177 * 1 2 3 23 23 H 1.09004 * 109.47054 * 59.99681 * 1 2 3 24 24 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 25 25 H 1.08001 * 120.07324 * 359.97438 * 4 3 2 26 26 H 1.08000 * 120.00699 * 179.79144 * 8 5 4 27 27 H 1.08999 * 109.46838 * 25.02508 * 10 9 8 28 28 H 1.09001 * 109.47300 * 145.02049 * 10 9 8 29 29 H 0.97004 * 119.99903 * 179.97438 * 14 13 11 30 30 H 1.09004 * 109.46774 * 180.02562 * 21 20 19 31 31 H 1.09003 * 109.46755 * 299.99997 * 21 20 19 32 32 H 1.08995 * 109.46887 * 59.99923 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2940 2.3705 -0.0057 5 6 1.9318 3.6139 -0.0008 6 6 1.1568 4.8180 -0.0012 7 7 0.5419 5.7733 -0.0026 8 6 3.3275 3.6795 -0.0003 9 6 4.0719 2.5197 0.0001 10 6 5.5771 2.5923 0.0001 11 6 6.0849 2.4929 -1.4152 12 1 5.3874 2.3873 -2.2330 13 6 7.4399 2.5369 -1.6662 14 7 8.2893 2.6650 -0.6703 15 14 8.0694 2.4130 -3.4206 16 1 8.1683 3.7731 -4.0082 17 1 9.4102 1.7747 -3.4215 18 1 7.1300 1.5926 -4.2267 19 6 3.4383 1.2846 0.0005 20 8 4.1766 0.1443 0.0003 21 6 4.5284 -0.4007 -1.2730 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2154 2.3154 -0.0106 26 1 3.8231 4.6391 0.0001 27 1 5.8950 3.5401 0.4346 28 1 5.9806 1.7689 0.5895 29 1 9.2427 2.6956 -0.8469 30 1 5.1154 -1.3080 -1.1302 31 1 3.6217 -0.6387 -1.8293 32 1 5.1159 0.3287 -1.8305 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260142590.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:17 Heat of formation + Delta-G solvation = -42.034577 kcal Electronic energy + Delta-G solvation = -17497.671493 eV Core-core repulsion = 14616.617112 eV Total energy + Delta-G solvation = -2881.054381 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.57365 -39.16304 -38.59961 -37.10467 -35.27547 -32.91636 -31.30224 -29.21688 -28.20085 -27.53818 -25.22480 -24.21975 -22.40156 -19.68130 -18.74121 -18.46363 -17.87315 -17.40528 -16.87625 -16.50255 -15.95710 -15.47432 -15.02037 -14.95577 -14.63689 -14.58277 -14.32602 -13.83586 -13.59718 -13.26399 -13.09424 -12.96736 -12.57165 -12.52180 -12.45252 -12.14168 -11.94519 -11.53095 -11.39303 -10.72683 -10.52803 -9.58848 -9.15517 -8.14386 -6.24410 -0.36286 0.38529 1.44342 1.45514 1.53656 1.55111 1.78264 2.31351 2.44268 2.65568 2.78949 3.12930 3.18855 3.85374 4.10026 4.13107 4.38097 4.48059 4.48967 4.58205 4.73443 4.75683 4.79666 4.85980 5.06696 5.18984 5.21160 5.42238 5.57240 5.79039 5.80321 6.19618 6.26633 6.36144 6.75514 6.85811 7.41918 8.95846 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.020482 B = 0.007592 C = 0.006120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.699055 B = 3687.110721 C = 4573.936854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.321 6.321 3 C 0.109 3.891 4 C -0.151 4.151 5 C 0.001 3.999 6 C 0.288 3.712 7 N -0.451 5.451 8 C -0.094 4.094 9 C -0.046 4.046 10 C 0.061 3.939 11 C -0.514 4.514 12 H 0.060 0.940 13 C 0.011 3.989 14 N -0.927 5.927 15 Si 0.953 3.047 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.260 1.260 19 C 0.079 3.921 20 O -0.341 6.341 21 C 0.034 3.966 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.121 0.879 25 H 0.172 0.828 26 H 0.136 0.864 27 H 0.013 0.987 28 H 0.012 0.988 29 H 0.264 0.736 30 H 0.100 0.900 31 H 0.051 0.949 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.162 -5.700 -0.726 15.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.235 6.235 3 C 0.063 3.937 4 C -0.172 4.172 5 C -0.002 4.002 6 C -0.027 4.027 7 N -0.127 5.127 8 C -0.115 4.115 9 C -0.047 4.047 10 C 0.024 3.976 11 C -0.552 4.552 12 H 0.078 0.922 13 C -0.187 4.187 14 N -0.567 5.567 15 Si 0.778 3.222 16 H -0.202 1.202 17 H -0.210 1.210 18 H -0.184 1.184 19 C 0.033 3.967 20 O -0.257 6.257 21 C -0.060 4.060 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.139 0.861 25 H 0.189 0.811 26 H 0.154 0.846 27 H 0.032 0.968 28 H 0.030 0.970 29 H 0.073 0.927 30 H 0.118 0.882 31 H 0.070 0.930 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.803 -4.520 -0.542 15.488 hybrid contribution 0.957 -0.101 -0.826 1.268 sum -13.846 -4.622 -1.368 14.661 Atomic orbital electron populations 1.23471 0.76221 1.05920 1.02660 1.86186 1.23552 1.25179 1.88542 1.19044 0.90561 0.85623 0.98461 1.21121 1.01241 0.88812 1.06034 1.15617 0.90718 0.87078 1.06804 1.25498 0.92317 0.92388 0.92480 1.81228 1.10209 1.10965 1.10325 1.20922 0.91376 0.98640 1.00598 1.20429 0.98024 0.91378 0.94838 1.18011 0.85801 0.96678 0.97062 1.21207 0.91712 1.49981 0.92267 0.92151 1.25772 0.97236 0.94896 1.00822 1.70074 1.02738 1.50935 1.32972 0.85621 0.77841 0.78511 0.80206 1.20212 1.21038 1.18409 1.18302 0.87068 0.86669 1.04645 1.85874 1.71122 1.38065 1.30672 1.23160 0.99825 0.99082 0.83908 0.91204 0.91242 0.86129 0.81113 0.84579 0.96841 0.96963 0.92737 0.88188 0.93020 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.28 16 2 O -0.32 -8.53 10.27 -79.46 -0.82 -9.35 16 3 C 0.11 3.30 6.69 22.53 0.15 3.45 16 4 C -0.15 -3.78 8.74 22.62 0.20 -3.58 16 5 C 0.00 0.04 5.74 -21.31 -0.12 -0.08 16 6 C 0.29 8.18 15.33 88.33 1.35 9.53 16 7 N -0.45 -14.09 18.54 19.01 0.35 -13.74 16 8 C -0.09 -3.26 9.37 22.53 0.21 -3.05 16 9 C -0.05 -1.87 5.07 -19.83 -0.10 -1.97 16 10 C 0.06 3.07 4.82 29.10 0.14 3.21 16 11 C -0.51 -26.85 7.26 25.60 0.19 -26.67 16 12 H 0.06 3.06 7.31 -2.91 -0.02 3.04 16 13 C 0.01 0.61 5.46 84.66 0.46 1.07 16 14 N -0.93 -53.59 13.29 21.45 0.28 -53.30 16 15 Si 0.95 41.87 29.54 68.60 2.03 43.89 16 16 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 17 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 18 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 19 C 0.08 2.99 5.71 22.68 0.13 3.12 16 20 O -0.34 -13.84 9.30 -77.79 -0.72 -14.56 16 21 C 0.03 1.20 11.13 113.37 1.26 2.47 16 22 H 0.07 0.85 7.67 -2.39 -0.02 0.83 16 23 H 0.07 0.84 7.65 -2.38 -0.02 0.82 16 24 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.17 2.95 6.28 -2.91 -0.02 2.93 16 26 H 0.14 4.58 8.06 -2.91 -0.02 4.56 16 27 H 0.01 0.70 8.05 -2.39 -0.02 0.69 16 28 H 0.01 0.67 7.68 -2.39 -0.02 0.65 16 29 H 0.26 14.44 8.31 -92.70 -0.77 13.66 16 30 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 31 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.05 2.11 5.64 -2.39 -0.01 2.10 16 Total: -1.00 -63.37 288.46 7.25 -56.12 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: 1.14 Total: 2.16 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: 4.98 Total: -11.22 kcal Atomic # 7 Polarization: -67.68 SS G_CDS: 0.64 Total: -67.04 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -1.54 Total: -23.91 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Total: -63.37 7.25 -56.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260142590.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.085 kcal (2) G-P(sol) polarization free energy of solvation -63.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds