Wall clock time and date at job start Mon Mar 30 2020 06:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09009 * 109.46866 * 305.00034 * 10 9 7 12 12 N 1.46899 * 109.47377 * 64.99374 * 10 9 7 13 13 C 1.50700 * 109.47144 * 185.00130 * 10 9 7 14 14 C 1.38257 * 119.99368 * 279.72145 * 13 10 9 15 15 C 1.38221 * 119.99559 * 179.81200 * 14 13 10 16 16 C 1.38252 * 119.99953 * 0.39727 * 15 14 13 17 17 C 1.38220 * 120.00026 * 359.85804 * 16 15 14 18 18 C 1.50700 * 119.99799 * 179.97438 * 17 16 15 19 19 C 1.54027 * 113.81653 * 38.49026 * 18 17 16 20 20 O 1.44447 * 85.42477 * 223.23221 * 19 18 17 21 21 C 1.44174 * 93.38111 * 24.08733 * 20 19 18 22 22 C 1.38206 * 120.00153 * 100.00193 * 13 10 9 23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 25 25 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 26 26 H 1.00898 * 111.00374 * 296.05134 * 12 10 9 27 27 H 1.00901 * 110.99243 * 60.00090 * 12 10 9 28 28 H 1.07995 * 120.00523 * 359.97438 * 14 13 10 29 29 H 1.07992 * 119.99763 * 180.23361 * 15 14 13 30 30 H 1.07998 * 120.00473 * 179.83453 * 16 15 14 31 31 H 1.09004 * 112.99421 * 170.31149 * 18 17 16 32 32 H 1.09003 * 113.86820 * 337.33658 * 19 18 17 33 33 H 1.09003 * 113.87097 * 109.04778 * 19 18 17 34 34 H 1.08994 * 113.86627 * 221.77089 * 21 20 19 35 35 H 1.09003 * 113.86375 * 90.05692 * 21 20 19 36 36 H 1.08000 * 120.00247 * 359.97172 * 22 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9293 -3.5515 -0.8518 12 7 3.0082 -3.6596 1.2448 13 6 1.4956 -4.9631 -0.1402 14 6 0.8987 -5.5306 0.9703 15 6 0.2080 -6.7219 0.8506 16 6 0.1211 -7.3501 -0.3779 17 6 0.7224 -6.7854 -1.4870 18 6 0.6281 -7.4705 -2.8259 19 6 -0.7417 -8.1207 -3.0968 20 8 0.0190 -9.2379 -3.6066 21 6 1.1883 -8.9053 -2.8314 22 6 1.4100 -5.5919 -1.3680 23 1 -0.4850 0.8401 -0.0004 24 1 0.6242 -2.5609 0.8844 25 1 0.6244 -2.5529 -0.8956 26 1 3.5699 -2.8253 1.3248 27 1 2.3958 -3.7609 2.0403 28 1 0.9698 -5.0418 1.9307 29 1 -0.2615 -7.1632 1.7172 30 1 -0.4163 -8.2822 -0.4710 31 1 0.9921 -6.8527 -3.6469 32 1 -1.3082 -8.3484 -2.1937 33 1 -1.3325 -7.6056 -3.8542 34 1 2.1249 -9.0110 -3.3787 35 1 1.2124 -9.3730 -1.8471 36 1 1.8798 -5.1506 -2.2346 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260163014.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:08 Heat of formation + Delta-G solvation = -1.941341 kcal Electronic energy + Delta-G solvation = -17352.523104 eV Core-core repulsion = 14609.040391 eV Total energy + Delta-G solvation = -2743.482713 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.71168 -38.77803 -35.48229 -32.63272 -31.86297 -30.27327 -27.99859 -27.83000 -26.61955 -24.64100 -22.55721 -22.05701 -20.66630 -18.81294 -17.10879 -16.59146 -16.27110 -15.78968 -15.45513 -15.08302 -14.65240 -14.51173 -13.56932 -13.31522 -12.86912 -12.77281 -12.55599 -12.32329 -12.23674 -11.86622 -11.48572 -11.24900 -11.12696 -10.88243 -10.64031 -10.42308 -10.23571 -9.95719 -9.69115 -9.19196 -8.55966 -8.44640 -8.32112 -7.69721 -6.11859 -4.16632 1.63285 1.75346 3.23329 3.31700 3.34847 3.58962 3.95342 4.35693 4.55886 4.67407 4.99937 5.06422 5.18830 5.22429 5.26863 5.28592 5.40060 5.43747 5.67378 5.74159 5.83774 5.95597 5.99164 6.03141 6.11192 6.34119 6.47180 6.68904 6.78934 6.81192 7.08566 7.32857 7.43539 7.54811 7.82101 8.01242 8.17495 8.29464 8.90348 9.48868 10.98787 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.033755 B = 0.004655 C = 0.004439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.299169 B = 6013.793433 C = 6305.641164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.001 3.999 10 C 0.123 3.877 11 H 0.076 0.924 12 N -0.840 5.840 13 C -0.043 4.043 14 C -0.106 4.106 15 C -0.119 4.119 16 C -0.133 4.133 17 C -0.090 4.090 18 C -0.112 4.112 19 C 0.041 3.959 20 O -0.387 6.387 21 C 0.044 3.956 22 C -0.109 4.109 23 H 0.261 0.739 24 H 0.017 0.983 25 H 0.019 0.981 26 H 0.346 0.654 27 H 0.328 0.672 28 H 0.119 0.881 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.564 -14.349 -1.854 14.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.076 0.924 9 C -0.037 4.037 10 C 0.012 3.988 11 H 0.094 0.906 12 N -0.368 5.368 13 C -0.043 4.043 14 C -0.125 4.125 15 C -0.137 4.137 16 C -0.151 4.151 17 C -0.090 4.090 18 C -0.131 4.131 19 C -0.035 4.035 20 O -0.306 6.306 21 C -0.032 4.032 22 C -0.127 4.127 23 H 0.071 0.929 24 H 0.036 0.964 25 H 0.038 0.962 26 H 0.160 0.840 27 H 0.140 0.860 28 H 0.137 0.863 29 H 0.135 0.865 30 H 0.132 0.868 31 H 0.126 0.874 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.720 -15.094 -2.335 15.290 hybrid contribution -0.228 2.136 0.352 2.177 sum 0.492 -12.958 -1.984 13.118 Atomic orbital electron populations 1.69984 1.06125 1.26676 1.50130 1.25021 0.94823 0.99342 0.95013 0.86529 0.80122 0.83669 0.77652 1.19628 1.20963 1.20994 1.21197 0.92938 0.90792 1.51518 0.92437 1.19794 0.94408 0.91672 0.97866 1.20566 0.94581 0.90726 0.92947 0.90636 1.59273 1.27950 1.45814 1.03798 1.20165 0.95703 0.95709 0.92765 1.20952 0.97360 0.95469 0.98686 1.21024 0.99573 0.95967 0.97103 1.20782 1.01519 1.00146 0.92688 1.19543 0.99572 0.95765 0.94108 1.23279 0.96657 0.96750 0.96381 1.24163 0.94457 0.85620 0.99300 1.89693 1.26852 1.51198 1.62846 1.24050 0.90619 0.92321 0.96257 1.20900 0.99775 0.94598 0.97475 0.92927 0.96443 0.96226 0.84018 0.85990 0.86328 0.86532 0.86838 0.87379 0.89684 0.88971 0.89091 0.89899 0.86304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.11 13.29 55.43 0.74 -25.38 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.53 -14.07 8.55 -34.44 -0.29 -14.36 16 8 H 0.06 1.48 7.15 -52.49 -0.38 1.11 16 9 C 0.00 0.03 4.60 -27.88 -0.13 -0.10 16 10 C 0.12 2.48 2.99 -68.87 -0.21 2.27 16 11 H 0.08 1.55 8.00 -51.92 -0.42 1.14 16 12 N -0.84 -15.48 9.02 -5.65 -0.05 -15.53 16 13 C -0.04 -0.77 4.96 -104.63 -0.52 -1.29 16 14 C -0.11 -1.75 9.30 -39.58 -0.37 -2.12 16 15 C -0.12 -1.68 10.05 -39.58 -0.40 -2.08 16 16 C -0.13 -1.77 8.53 -39.58 -0.34 -2.11 16 17 C -0.09 -1.25 5.31 -104.62 -0.56 -1.80 16 18 C -0.11 -1.31 4.22 -90.70 -0.38 -1.69 16 19 C 0.04 0.45 8.60 37.64 0.32 0.78 16 20 O -0.39 -4.87 12.46 -35.23 -0.44 -5.31 16 21 C 0.04 0.47 8.68 37.64 0.33 0.80 16 22 C -0.11 -1.77 9.33 -39.59 -0.37 -2.14 16 23 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.35 6.52 7.90 -39.29 -0.31 6.21 16 27 H 0.33 5.77 7.34 -39.29 -0.29 5.48 16 28 H 0.12 1.89 6.65 -52.49 -0.35 1.54 16 29 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 30 H 0.11 1.25 6.77 -52.49 -0.36 0.89 16 31 H 0.11 1.21 8.09 -51.93 -0.42 0.79 16 32 H 0.09 0.86 6.42 -51.93 -0.33 0.53 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.83 7.68 -51.93 -0.40 0.43 16 36 H 0.12 1.83 8.03 -52.49 -0.42 1.41 16 LS Contribution 299.17 15.07 4.51 4.51 Total: -1.00 -29.79 299.17 -8.19 -37.97 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -4.92 Total: 10.05 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: -3.00 Total: -22.29 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 0.69 Total: -40.91 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: -0.44 Total: -5.31 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.79 -8.19 -37.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260163014.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.032 kcal (2) G-P(sol) polarization free energy of solvation -29.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds