Wall clock time and date at job start Mon Mar 30 2020 06:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09009 * 109.46866 * 305.00034 * 10 9 7 12 12 N 1.46899 * 109.47377 * 64.99374 * 10 9 7 13 13 C 1.50700 * 109.47144 * 185.00130 * 10 9 7 14 14 C 1.38257 * 119.99368 * 279.72145 * 13 10 9 15 15 C 1.38221 * 119.99559 * 179.81200 * 14 13 10 16 16 C 1.38252 * 119.99953 * 0.39727 * 15 14 13 17 17 C 1.38220 * 120.00026 * 359.85804 * 16 15 14 18 18 C 1.50700 * 119.99799 * 179.97438 * 17 16 15 19 19 C 1.54027 * 113.81653 * 38.49026 * 18 17 16 20 20 O 1.44447 * 85.42477 * 223.23221 * 19 18 17 21 21 C 1.44174 * 93.38111 * 24.08733 * 20 19 18 22 22 C 1.38206 * 120.00153 * 100.00193 * 13 10 9 23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 25 25 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 26 26 H 1.00898 * 111.00374 * 296.05134 * 12 10 9 27 27 H 1.00901 * 110.99243 * 60.00090 * 12 10 9 28 28 H 1.07995 * 120.00523 * 359.97438 * 14 13 10 29 29 H 1.07992 * 119.99763 * 180.23361 * 15 14 13 30 30 H 1.07998 * 120.00473 * 179.83453 * 16 15 14 31 31 H 1.09004 * 112.99421 * 170.31149 * 18 17 16 32 32 H 1.09003 * 113.86820 * 337.33658 * 19 18 17 33 33 H 1.09003 * 113.87097 * 109.04778 * 19 18 17 34 34 H 1.08994 * 113.86627 * 221.77089 * 21 20 19 35 35 H 1.09003 * 113.86375 * 90.05692 * 21 20 19 36 36 H 1.08000 * 120.00247 * 359.97172 * 22 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9293 -3.5515 -0.8518 12 7 3.0082 -3.6596 1.2448 13 6 1.4956 -4.9631 -0.1402 14 6 0.8987 -5.5306 0.9703 15 6 0.2080 -6.7219 0.8506 16 6 0.1211 -7.3501 -0.3779 17 6 0.7224 -6.7854 -1.4870 18 6 0.6281 -7.4705 -2.8259 19 6 -0.7417 -8.1207 -3.0968 20 8 0.0190 -9.2379 -3.6066 21 6 1.1883 -8.9053 -2.8314 22 6 1.4100 -5.5919 -1.3680 23 1 -0.4850 0.8401 -0.0004 24 1 0.6242 -2.5609 0.8844 25 1 0.6244 -2.5529 -0.8956 26 1 3.5699 -2.8253 1.3248 27 1 2.3958 -3.7609 2.0403 28 1 0.9698 -5.0418 1.9307 29 1 -0.2615 -7.1632 1.7172 30 1 -0.4163 -8.2822 -0.4710 31 1 0.9921 -6.8527 -3.6469 32 1 -1.3082 -8.3484 -2.1937 33 1 -1.3325 -7.6056 -3.8542 34 1 2.1249 -9.0110 -3.3787 35 1 1.2124 -9.3730 -1.8471 36 1 1.8798 -5.1506 -2.2346 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260163014.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:08 Heat of formation + Delta-G solvation = -21.249807 kcal Electronic energy + Delta-G solvation = -17353.360382 eV Core-core repulsion = 14609.040391 eV Total energy + Delta-G solvation = -2744.319991 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.66212 -39.98073 -37.05866 -34.59259 -33.01556 -31.55148 -29.91891 -28.88618 -27.44504 -26.36783 -24.03348 -23.24456 -22.03020 -20.00761 -18.78586 -17.91018 -17.37028 -16.71354 -16.65842 -16.57515 -16.39730 -15.79609 -14.88504 -14.72034 -14.44510 -14.20612 -13.81287 -13.59906 -13.55718 -13.41478 -12.87696 -12.73416 -12.52455 -12.33968 -12.18880 -11.87869 -11.82426 -11.44704 -11.14097 -10.64790 -10.56957 -9.75516 -9.55562 -9.25385 -8.24147 -6.36582 0.45906 0.54606 1.37672 1.39142 1.51498 2.37008 2.73505 2.81044 3.09143 3.59995 3.65904 3.90517 4.03113 4.13633 4.20713 4.24682 4.30963 4.42746 4.53581 4.59458 4.65624 4.79297 4.86821 4.95602 5.13783 5.15436 5.16852 5.21112 5.33711 5.46266 5.61618 5.66889 5.73288 5.84822 6.12200 6.16888 6.37819 6.69736 6.80135 7.33754 8.87168 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.033755 B = 0.004655 C = 0.004439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.299169 B = 6013.793433 C = 6305.641164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.964 3.036 4 H -0.259 1.259 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.537 4.537 8 H 0.065 0.935 9 C 0.013 3.987 10 C 0.137 3.863 11 H 0.067 0.933 12 N -0.828 5.828 13 C -0.072 4.072 14 C -0.124 4.124 15 C -0.116 4.116 16 C -0.126 4.126 17 C -0.083 4.083 18 C -0.116 4.116 19 C 0.042 3.958 20 O -0.405 6.405 21 C 0.048 3.952 22 C -0.126 4.126 23 H 0.263 0.737 24 H -0.008 1.008 25 H -0.015 1.015 26 H 0.344 0.656 27 H 0.334 0.666 28 H 0.117 0.883 29 H 0.146 0.854 30 H 0.145 0.855 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.957 -15.592 -1.771 15.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.789 3.211 4 H -0.183 1.183 5 H -0.208 1.208 6 H -0.205 1.205 7 C -0.575 4.575 8 H 0.084 0.916 9 C -0.026 4.026 10 C 0.025 3.975 11 H 0.085 0.915 12 N -0.356 5.356 13 C -0.072 4.072 14 C -0.142 4.142 15 C -0.134 4.134 16 C -0.144 4.144 17 C -0.083 4.083 18 C -0.135 4.135 19 C -0.034 4.034 20 O -0.325 6.325 21 C -0.028 4.028 22 C -0.145 4.145 23 H 0.072 0.928 24 H 0.010 0.990 25 H 0.003 0.997 26 H 0.157 0.843 27 H 0.146 0.854 28 H 0.135 0.865 29 H 0.164 0.836 30 H 0.163 0.837 31 H 0.126 0.874 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.112 0.888 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.131 -16.352 -2.246 16.544 hybrid contribution -0.392 2.441 0.315 2.493 sum 0.739 -13.911 -1.930 14.064 Atomic orbital electron populations 1.70120 1.07914 1.27689 1.51445 1.25947 0.95635 1.03304 0.94618 0.85405 0.79250 0.78850 0.77571 1.18281 1.20792 1.20550 1.21598 0.93493 0.91731 1.50694 0.91646 1.19648 0.94547 0.93526 0.94868 1.20261 0.93368 0.90519 0.93309 0.91504 1.59268 1.27536 1.45365 1.03451 1.20054 0.97420 0.95446 0.94308 1.21070 0.98260 0.96735 0.98161 1.21362 0.98533 0.94871 0.98648 1.21161 1.00473 1.00833 0.91902 1.19773 0.98278 0.94712 0.95581 1.23355 0.97829 0.97206 0.95076 1.24292 0.94080 0.84950 1.00066 1.89684 1.27663 1.51676 1.63461 1.24170 0.90714 0.91061 0.96852 1.21025 1.00794 0.95815 0.96832 0.92836 0.98964 0.99683 0.84297 0.85358 0.86549 0.83615 0.83715 0.87356 0.88497 0.88132 0.87820 0.88834 0.86457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.95 13.29 21.45 0.28 -55.67 16 2 C 0.00 0.18 5.46 84.66 0.46 0.64 16 3 Si 0.96 43.31 29.54 68.60 2.03 45.33 16 4 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.54 -29.26 8.55 25.60 0.22 -29.04 16 8 H 0.07 3.38 7.15 -2.91 -0.02 3.36 16 9 C 0.01 0.66 4.60 29.85 0.14 0.80 16 10 C 0.14 5.68 2.99 44.17 0.13 5.81 16 11 H 0.07 2.84 8.00 -2.38 -0.02 2.82 16 12 N -0.83 -30.79 9.02 -171.80 -1.55 -32.34 16 13 C -0.07 -2.62 4.96 -19.87 -0.10 -2.72 16 14 C -0.12 -4.04 9.30 22.27 0.21 -3.84 16 15 C -0.12 -3.04 10.05 22.27 0.22 -2.81 16 16 C -0.13 -2.99 8.53 22.27 0.19 -2.80 16 17 C -0.08 -2.18 5.31 -19.86 -0.11 -2.29 16 18 C -0.12 -2.48 4.22 -10.84 -0.05 -2.53 16 19 C 0.04 0.82 8.60 72.29 0.62 1.44 16 20 O -0.41 -9.22 12.46 -148.98 -1.86 -11.07 16 21 C 0.05 0.91 8.68 72.30 0.63 1.54 16 22 C -0.13 -4.11 9.33 22.27 0.21 -3.90 16 23 H 0.26 14.85 8.31 -92.70 -0.77 14.08 16 24 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 25 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 26 H 0.34 12.97 7.90 -89.70 -0.71 12.26 16 27 H 0.33 11.87 7.34 -89.69 -0.66 11.21 16 28 H 0.12 3.72 6.65 -2.91 -0.02 3.71 16 29 H 0.15 2.91 8.06 -2.91 -0.02 2.88 16 30 H 0.15 2.55 6.77 -2.91 -0.02 2.53 16 31 H 0.11 2.29 8.09 -2.38 -0.02 2.27 16 32 H 0.10 1.64 6.42 -2.39 -0.02 1.62 16 33 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.09 1.56 7.68 -2.39 -0.02 1.54 16 36 H 0.12 3.71 8.03 -2.91 -0.02 3.68 16 Total: -1.00 -64.56 299.17 1.41 -63.15 By element: Atomic # 1 Polarization: 30.58 SS G_CDS: -0.27 Total: 30.30 kcal Atomic # 6 Polarization: -42.48 SS G_CDS: 2.78 Total: -39.71 kcal Atomic # 7 Polarization: -86.74 SS G_CDS: -1.26 Total: -88.01 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -1.86 Total: -11.07 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -64.56 1.41 -63.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260163014.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.901 kcal (2) G-P(sol) polarization free energy of solvation -64.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds