Wall clock time and date at job start Mon Mar 30 2020 06:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31058 * 1 3 3 Si 1.86798 * 119.99991 * 2 1 4 4 H 1.48504 * 109.47137 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47358 * 120.00338 * 3 2 1 6 6 H 1.48502 * 109.47018 * 240.00401 * 3 2 1 7 7 C 1.39675 * 119.99706 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99801 * 157.06631 * 7 2 1 9 9 C 1.41350 * 120.00270 * 337.06998 * 7 2 1 10 10 C 1.46536 * 127.13563 * 337.73964 * 9 7 2 11 11 C 1.34628 * 106.80206 * 179.97438 * 10 9 7 12 12 N 1.36757 * 108.99702 * 0.02562 * 11 10 9 13 13 H 0.97002 * 124.72831 * 179.97438 * 12 11 10 14 14 C 1.34909 * 110.54768 * 359.70904 * 12 11 10 15 15 C 1.50703 * 126.03895 * 180.33184 * 14 12 11 16 16 C 1.54262 * 110.03365 * 57.31231 * 15 14 12 17 17 C 1.54887 * 104.19587 * 217.10923 * 16 15 14 18 18 C 1.54892 * 102.74891 * 37.93626 * 17 16 15 19 19 C 1.53877 * 110.02947 * 300.14268 * 15 14 12 20 20 C 1.51340 * 107.55151 * 180.02562 * 11 10 9 21 21 O 1.43968 * 105.91538 * 342.45134 * 20 11 10 22 22 C 1.44031 * 104.26173 * 27.82612 * 21 20 11 23 23 H 0.96999 * 120.00157 * 174.13850 * 1 2 3 24 24 H 1.08998 * 110.01663 * 178.75535 * 15 14 12 25 25 H 1.09006 * 110.48573 * 335.78264 * 16 15 14 26 26 H 1.08997 * 110.48806 * 98.42412 * 16 15 14 27 27 H 1.09003 * 110.75434 * 279.62462 * 17 16 15 28 28 H 1.08998 * 110.91551 * 156.32746 * 17 16 15 29 29 H 1.09006 * 110.48394 * 203.38042 * 18 17 16 30 30 H 1.09001 * 110.59227 * 80.79553 * 18 17 16 31 31 H 1.08998 * 110.03091 * 238.57055 * 19 15 14 32 32 H 1.08997 * 110.03397 * 359.95034 * 19 15 14 33 33 H 1.09004 * 110.15710 * 223.34232 * 20 11 10 34 34 H 1.08996 * 110.22030 * 101.59813 * 20 11 10 35 35 H 1.09000 * 110.18534 * 213.16410 * 22 21 20 36 36 H 1.08993 * 110.25088 * 91.35438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3106 0.0000 0.0000 3 14 2.2446 1.6177 0.0000 4 1 1.2795 2.7465 -0.0006 5 1 3.0984 1.6964 1.2124 6 1 3.0982 1.6964 -1.2126 7 6 2.0089 -1.2097 -0.0005 8 1 3.0249 -1.2465 -0.3650 9 6 1.3859 -2.3856 0.4758 10 6 0.2460 -2.4738 1.3925 11 6 -0.0104 -3.7835 1.5698 12 7 0.8816 -4.5151 0.8354 13 1 0.9026 -5.4842 0.7974 14 6 1.7245 -3.7014 0.1666 15 6 2.8374 -4.1382 -0.7509 16 6 2.2727 -5.0189 -1.8846 17 6 3.3644 -6.0942 -2.1100 18 6 3.8585 -6.3864 -0.6713 19 6 3.8457 -5.0077 0.0205 20 6 -1.1872 -3.8942 2.5149 21 8 -1.2934 -2.6140 3.1649 22 6 -0.7460 -1.6849 2.2102 23 1 -0.4850 -0.8356 -0.0858 24 1 3.3398 -3.2662 -1.1695 25 1 1.3367 -5.4845 -1.5758 26 1 2.1259 -4.4286 -2.7891 27 1 4.1742 -5.6997 -2.7238 28 1 2.9402 -6.9905 -2.5623 29 1 4.8692 -6.7943 -0.6906 30 1 3.1803 -7.0735 -0.1653 31 1 4.8376 -4.5581 -0.0245 32 1 3.5305 -5.1130 1.0586 33 1 -1.0045 -4.6760 3.2523 34 1 -2.0989 -4.1095 1.9577 35 1 -0.2424 -0.8678 2.7268 36 1 -1.5357 -1.2938 1.5688 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260174119.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:57 Heat of formation + Delta-G solvation = -10.354237 kcal Electronic energy + Delta-G solvation = -18360.409645 eV Core-core repulsion = 15616.562121 eV Total energy + Delta-G solvation = -2743.847524 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.32754 -37.96141 -36.45855 -33.62374 -30.10141 -29.45790 -28.30101 -27.58840 -27.15673 -24.07131 -22.28819 -20.35155 -20.02346 -19.25689 -18.13042 -16.75690 -16.05502 -15.39686 -15.24264 -14.79943 -14.20733 -13.85400 -13.30097 -13.05322 -12.65012 -12.52092 -12.38090 -11.99486 -11.63829 -11.17564 -10.94128 -10.87097 -10.81177 -10.68967 -10.47907 -10.34975 -10.23472 -10.01252 -9.88294 -9.31432 -9.18705 -8.73443 -7.24859 -6.88987 -6.61143 -3.95355 3.21831 3.32813 3.37104 3.52943 4.04809 4.15254 4.31382 4.79921 5.02624 5.03256 5.10697 5.45819 5.63495 5.73334 5.76924 5.89521 5.89818 5.94272 5.96884 6.02879 6.10993 6.15862 6.21003 6.38981 6.53481 6.59359 6.66835 6.74559 6.79621 6.91344 7.23733 7.34749 7.53490 7.88659 8.18255 8.38179 8.52922 8.87969 9.09002 9.34540 10.52810 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.016958 B = 0.009754 C = 0.006688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.695603 B = 2869.804749 C = 4185.520254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.039 3.961 3 Si 1.060 2.940 4 H -0.279 1.279 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.065 0.935 9 C 0.083 3.917 10 C -0.251 4.251 11 C -0.076 4.076 12 N -0.525 5.525 13 H 0.386 0.614 14 C -0.126 4.126 15 C 0.014 3.986 16 C -0.116 4.116 17 C -0.126 4.126 18 C -0.124 4.124 19 C -0.122 4.122 20 C 0.147 3.853 21 O -0.376 6.376 22 C 0.135 3.865 23 H 0.291 0.709 24 H 0.085 0.915 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.934 -8.610 -1.051 9.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.178 4.178 3 Si 0.886 3.114 4 H -0.204 1.204 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.559 4.559 8 H 0.083 0.917 9 C 0.077 3.923 10 C -0.262 4.262 11 C -0.190 4.190 12 N -0.122 5.122 13 H 0.218 0.782 14 C -0.233 4.233 15 C -0.005 4.005 16 C -0.154 4.154 17 C -0.164 4.164 18 C -0.161 4.161 19 C -0.160 4.160 20 C 0.068 3.932 21 O -0.295 6.295 22 C 0.059 3.941 23 H 0.104 0.896 24 H 0.103 0.897 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.637 -7.000 -0.796 7.523 hybrid contribution 0.280 -2.233 -0.259 2.265 sum 2.917 -9.233 -1.055 9.740 Atomic orbital electron populations 1.70535 1.07920 1.33235 1.34260 1.26530 0.95865 1.03241 0.92124 0.83705 0.75534 0.74797 0.77332 1.20363 1.20664 1.20811 1.19532 1.01075 0.93052 1.42229 0.91724 1.17564 0.90969 0.90915 0.92842 1.21640 1.04221 0.92852 1.07520 1.20918 0.99314 0.93365 1.05426 1.39827 1.26401 1.06347 1.39611 0.78181 1.19840 1.03730 0.88779 1.10942 1.19760 0.91733 0.97081 0.91958 1.22454 0.97523 0.96489 0.98946 1.22516 0.98747 0.98532 0.96567 1.22364 1.00151 0.97540 0.96069 1.22327 0.99432 0.94589 0.99638 1.20783 0.92552 0.87255 0.92570 1.89064 1.83295 1.16650 1.40477 1.20993 0.93604 0.90409 0.89105 0.89564 0.89719 0.92460 0.91938 0.91763 0.92409 0.92414 0.92491 0.92348 0.92131 0.91012 0.92328 0.90553 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.05 12.19 55.53 0.68 -22.38 16 2 C 0.04 1.05 5.29 -17.35 -0.09 0.96 16 3 Si 1.06 23.14 29.99 -169.99 -5.10 18.05 16 4 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.53 -14.44 8.90 -37.86 -0.34 -14.77 16 8 H 0.06 1.74 7.35 -52.48 -0.39 1.35 16 9 C 0.08 2.21 5.61 -104.96 -0.59 1.62 16 10 C -0.25 -6.38 5.61 -102.49 -0.58 -6.96 16 11 C -0.08 -1.70 8.22 -81.36 -0.67 -2.37 16 12 N -0.53 -10.81 5.69 -4.49 -0.03 -10.84 16 13 H 0.39 6.62 8.96 -40.82 -0.37 6.26 16 14 C -0.13 -2.86 5.50 -80.83 -0.44 -3.31 16 15 C 0.01 0.27 3.33 -90.65 -0.30 -0.03 16 16 C -0.12 -1.90 6.35 -25.08 -0.16 -2.06 16 17 C -0.13 -1.67 6.91 -24.74 -0.17 -1.84 16 18 C -0.12 -1.64 6.83 -25.07 -0.17 -1.81 16 19 C -0.12 -1.98 6.45 -25.62 -0.17 -2.15 16 20 C 0.15 2.81 7.64 36.32 0.28 3.08 16 21 O -0.38 -8.23 11.77 -35.23 -0.41 -8.65 16 22 C 0.13 3.22 6.34 36.07 0.23 3.45 16 23 H 0.29 8.26 5.54 -40.82 -0.23 8.04 16 24 H 0.08 1.76 7.18 -51.93 -0.37 1.38 16 25 H 0.06 0.95 7.67 -51.93 -0.40 0.56 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 1.06 7.67 -51.93 -0.40 0.66 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.08 1.89 8.14 -51.93 -0.42 1.46 16 36 H 0.06 1.50 7.19 -51.93 -0.37 1.13 16 LS Contribution 288.78 15.07 4.35 4.35 Total: -1.00 -29.05 288.78 -8.80 -37.84 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -5.12 Total: 7.80 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: -3.17 Total: -26.18 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: 0.65 Total: -33.21 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -0.41 Total: -8.65 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.10 Total: 18.05 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.05 -8.80 -37.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260174119.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.490 kcal (2) G-P(sol) polarization free energy of solvation -29.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds