Wall clock time and date at job start Mon Mar 30 2020 06:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31058 * 1 3 3 Si 1.86798 * 119.99991 * 2 1 4 4 H 1.48504 * 109.47137 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47358 * 120.00338 * 3 2 1 6 6 H 1.48502 * 109.47018 * 240.00401 * 3 2 1 7 7 C 1.39675 * 119.99706 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99801 * 157.06631 * 7 2 1 9 9 C 1.41350 * 120.00270 * 337.06998 * 7 2 1 10 10 C 1.46536 * 127.13563 * 337.73964 * 9 7 2 11 11 C 1.34628 * 106.80206 * 179.97438 * 10 9 7 12 12 N 1.36757 * 108.99702 * 0.02562 * 11 10 9 13 13 H 0.97002 * 124.72831 * 179.97438 * 12 11 10 14 14 C 1.34909 * 110.54768 * 359.70904 * 12 11 10 15 15 C 1.50703 * 126.03895 * 180.33184 * 14 12 11 16 16 C 1.54262 * 110.03365 * 57.31231 * 15 14 12 17 17 C 1.54887 * 104.19587 * 217.10923 * 16 15 14 18 18 C 1.54892 * 102.74891 * 37.93626 * 17 16 15 19 19 C 1.53877 * 110.02947 * 300.14268 * 15 14 12 20 20 C 1.51340 * 107.55151 * 180.02562 * 11 10 9 21 21 O 1.43968 * 105.91538 * 342.45134 * 20 11 10 22 22 C 1.44031 * 104.26173 * 27.82612 * 21 20 11 23 23 H 0.96999 * 120.00157 * 174.13850 * 1 2 3 24 24 H 1.08998 * 110.01663 * 178.75535 * 15 14 12 25 25 H 1.09006 * 110.48573 * 335.78264 * 16 15 14 26 26 H 1.08997 * 110.48806 * 98.42412 * 16 15 14 27 27 H 1.09003 * 110.75434 * 279.62462 * 17 16 15 28 28 H 1.08998 * 110.91551 * 156.32746 * 17 16 15 29 29 H 1.09006 * 110.48394 * 203.38042 * 18 17 16 30 30 H 1.09001 * 110.59227 * 80.79553 * 18 17 16 31 31 H 1.08998 * 110.03091 * 238.57055 * 19 15 14 32 32 H 1.08997 * 110.03397 * 359.95034 * 19 15 14 33 33 H 1.09004 * 110.15710 * 223.34232 * 20 11 10 34 34 H 1.08996 * 110.22030 * 101.59813 * 20 11 10 35 35 H 1.09000 * 110.18534 * 213.16410 * 22 21 20 36 36 H 1.08993 * 110.25088 * 91.35438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3106 0.0000 0.0000 3 14 2.2446 1.6177 0.0000 4 1 1.2795 2.7465 -0.0006 5 1 3.0984 1.6964 1.2124 6 1 3.0982 1.6964 -1.2126 7 6 2.0089 -1.2097 -0.0005 8 1 3.0249 -1.2465 -0.3650 9 6 1.3859 -2.3856 0.4758 10 6 0.2460 -2.4738 1.3925 11 6 -0.0104 -3.7835 1.5698 12 7 0.8816 -4.5151 0.8354 13 1 0.9026 -5.4842 0.7974 14 6 1.7245 -3.7014 0.1666 15 6 2.8374 -4.1382 -0.7509 16 6 2.2727 -5.0189 -1.8846 17 6 3.3644 -6.0942 -2.1100 18 6 3.8585 -6.3864 -0.6713 19 6 3.8457 -5.0077 0.0205 20 6 -1.1872 -3.8942 2.5149 21 8 -1.2934 -2.6140 3.1649 22 6 -0.7460 -1.6849 2.2102 23 1 -0.4850 -0.8356 -0.0858 24 1 3.3398 -3.2662 -1.1695 25 1 1.3367 -5.4845 -1.5758 26 1 2.1259 -4.4286 -2.7891 27 1 4.1742 -5.6997 -2.7238 28 1 2.9402 -6.9905 -2.5623 29 1 4.8692 -6.7943 -0.6906 30 1 3.1803 -7.0735 -0.1653 31 1 4.8376 -4.5581 -0.0245 32 1 3.5305 -5.1130 1.0586 33 1 -1.0045 -4.6760 3.2523 34 1 -2.0989 -4.1095 1.9577 35 1 -0.2424 -0.8678 2.7268 36 1 -1.5357 -1.2938 1.5688 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260174119.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:56 Heat of formation + Delta-G solvation = -27.499433 kcal Electronic energy + Delta-G solvation = -18361.153116 eV Core-core repulsion = 15616.562121 eV Total energy + Delta-G solvation = -2744.590995 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.11204 -39.51062 -37.98412 -35.57985 -31.70323 -31.33393 -29.55450 -29.15341 -28.90634 -26.01872 -23.95270 -21.76036 -21.49593 -20.96289 -19.88542 -18.53888 -17.87171 -17.01305 -16.67833 -16.29383 -15.81197 -15.62944 -14.86763 -14.49805 -14.37907 -14.19626 -14.07560 -13.71205 -13.29508 -12.90211 -12.70579 -12.35512 -12.12224 -11.96882 -11.94054 -11.92245 -11.57024 -11.50087 -11.43770 -11.21370 -10.93232 -10.68710 -9.18893 -8.91309 -8.46455 -5.98506 1.44563 1.53148 1.58574 1.80897 2.21748 2.34204 2.49824 3.07059 3.39252 3.78159 3.80009 3.87832 4.03768 4.16111 4.43010 4.47541 4.52947 4.56387 4.65734 4.70575 4.72533 4.84200 4.85003 4.92486 5.02700 5.09322 5.22817 5.32135 5.40066 5.44076 5.48424 5.51609 5.75342 5.92479 6.15534 6.35543 6.62089 7.09234 7.16727 7.39743 8.45699 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.016958 B = 0.009754 C = 0.006688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.695603 B = 2869.804749 C = 4185.520254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C -0.003 4.003 3 Si 1.109 2.891 4 H -0.277 1.277 5 H -0.274 1.274 6 H -0.265 1.265 7 C -0.556 4.556 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.296 4.296 11 C -0.070 4.070 12 N -0.508 5.508 13 H 0.408 0.592 14 C -0.105 4.105 15 C 0.006 3.994 16 C -0.114 4.114 17 C -0.116 4.116 18 C -0.115 4.115 19 C -0.117 4.117 20 C 0.147 3.853 21 O -0.381 6.381 22 C 0.149 3.851 23 H 0.275 0.725 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.111 0.889 34 H 0.085 0.915 35 H 0.055 0.945 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.626 -11.214 -1.149 11.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.214 4.214 3 Si 0.929 3.071 4 H -0.202 1.202 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.589 4.589 8 H 0.072 0.928 9 C 0.016 3.984 10 C -0.307 4.307 11 C -0.186 4.186 12 N -0.104 5.104 13 H 0.244 0.756 14 C -0.213 4.213 15 C -0.013 4.013 16 C -0.152 4.152 17 C -0.153 4.153 18 C -0.152 4.152 19 C -0.155 4.155 20 C 0.069 3.931 21 O -0.300 6.300 22 C 0.072 3.928 23 H 0.087 0.913 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.129 0.871 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.328 -9.656 -0.893 10.253 hybrid contribution 0.078 -1.602 -0.223 1.619 sum 3.406 -11.258 -1.116 11.815 Atomic orbital electron populations 1.70644 1.08475 1.32095 1.37094 1.27822 0.96062 1.06308 0.91223 0.83083 0.74667 0.71106 0.78215 1.20178 1.19906 1.18933 1.19686 1.00816 0.94517 1.43841 0.92807 1.18049 0.93068 0.92414 0.94884 1.21893 1.05089 0.94910 1.08776 1.21450 0.99643 0.92421 1.05040 1.39790 1.25123 1.07383 1.38141 0.75618 1.20371 1.03336 0.88181 1.09444 1.19891 0.91378 0.97384 0.92695 1.22394 0.98620 0.96924 0.97212 1.22483 0.97688 0.98147 0.96977 1.22341 1.02010 0.95442 0.95404 1.22238 0.98397 0.96181 0.98670 1.21134 0.92044 0.86754 0.93136 1.89037 1.83056 1.17591 1.40266 1.20666 0.93003 0.90323 0.88790 0.91271 0.92384 0.92599 0.92845 0.90958 0.89901 0.90030 0.91279 0.91991 0.93441 0.87115 0.89753 0.92663 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.68 12.19 21.79 0.27 -49.41 16 2 C 0.00 -0.19 5.29 85.16 0.45 0.26 16 3 Si 1.11 48.27 29.99 68.60 2.06 50.33 16 4 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 6 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 7 C -0.56 -32.02 8.90 23.38 0.21 -31.81 16 8 H 0.05 3.06 7.35 -2.91 -0.02 3.04 16 9 C 0.02 1.20 5.61 -20.09 -0.11 1.08 16 10 C -0.30 -15.43 5.61 -18.48 -0.10 -15.54 16 11 C -0.07 -3.05 8.22 41.17 0.34 -2.71 16 12 N -0.51 -20.14 5.69 -168.13 -0.96 -21.09 16 13 H 0.41 12.78 8.96 -92.71 -0.83 11.95 16 14 C -0.10 -4.76 5.50 42.35 0.23 -4.52 16 15 C 0.01 0.23 3.33 -10.82 -0.04 0.19 16 16 C -0.11 -3.52 6.35 31.67 0.20 -3.32 16 17 C -0.12 -2.62 6.91 31.89 0.22 -2.40 16 18 C -0.11 -2.57 6.83 31.67 0.22 -2.35 16 19 C -0.12 -3.58 6.45 31.32 0.20 -3.38 16 20 C 0.15 5.25 7.64 71.44 0.55 5.80 16 21 O -0.38 -16.39 11.77 -148.98 -1.75 -18.14 16 22 C 0.15 7.34 6.34 71.28 0.45 7.79 16 23 H 0.28 16.55 5.54 -92.71 -0.51 16.03 16 24 H 0.06 2.49 7.18 -2.39 -0.02 2.47 16 25 H 0.06 1.73 7.67 -2.38 -0.02 1.71 16 26 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.05 1.57 7.67 -2.39 -0.02 1.55 16 33 H 0.11 3.16 8.14 -2.38 -0.02 3.14 16 34 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 35 H 0.06 2.89 8.14 -2.39 -0.02 2.87 16 36 H 0.05 2.64 7.19 -2.39 -0.02 2.62 16 Total: -1.00 -66.45 288.78 2.94 -63.51 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: 0.51 Total: 25.71 kcal Atomic # 6 Polarization: -53.71 SS G_CDS: 2.82 Total: -50.90 kcal Atomic # 7 Polarization: -69.82 SS G_CDS: -0.69 Total: -70.51 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -1.75 Total: -18.14 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 2.06 Total: 50.33 kcal Total: -66.45 2.94 -63.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260174119.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.015 kcal (2) G-P(sol) polarization free energy of solvation -66.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds