Wall clock time and date at job start Mon Mar 30 2020 05:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47251 * 2 1 4 4 C 1.50701 * 109.46946 * 239.99619 * 2 1 3 5 5 H 1.08001 * 120.00233 * 239.62571 * 4 2 1 6 6 C 1.37879 * 119.99488 * 59.62930 * 4 2 1 7 7 N 1.31510 * 120.00283 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 119.99613 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.46929 * 59.99787 * 8 6 4 10 10 H 1.48495 * 109.46721 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46862 * 299.99799 * 8 6 4 12 12 C 1.50701 * 109.46843 * 120.00048 * 2 1 3 13 13 C 1.37656 * 119.88039 * 243.53151 * 12 2 1 14 14 C 1.39796 * 119.95729 * 179.97438 * 13 12 2 15 15 C 1.43199 * 120.13884 * 179.97438 * 14 13 12 16 16 N 5.95564 * 120.94009 * 83.20363 * 2 1 3 17 17 C 1.40333 * 119.72724 * 359.97438 * 14 13 12 18 18 O 1.35707 * 120.11720 * 179.97438 * 17 14 13 19 19 C 1.38380 * 119.76638 * 0.02562 * 17 14 13 20 20 C 1.38744 * 120.03374 * 359.74142 * 19 17 14 21 21 O 1.35757 * 119.86038 * 180.25363 * 20 19 17 22 22 H 1.09008 * 109.46845 * 299.99811 * 1 2 3 23 23 H 1.09000 * 109.47399 * 60.00027 * 1 2 3 24 24 H 1.09000 * 109.47305 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47208 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.46897 * 300.00280 * 3 2 1 27 27 H 1.09004 * 109.47252 * 59.99834 * 3 2 1 28 28 H 0.97000 * 120.00302 * 180.02562 * 7 6 4 29 29 H 1.08004 * 120.02164 * 359.96732 * 13 12 2 30 30 H 0.96707 * 114.00093 * 90.00580 * 18 17 14 31 31 H 1.07989 * 119.98294 * 179.97438 * 19 17 14 32 32 H 0.96702 * 113.99917 * 270.25332 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6582 -1.5851 -1.1314 6 6 1.6928 -0.2439 -2.4827 7 7 0.9303 0.8208 -2.6033 8 14 2.3160 -1.1242 -4.0079 9 1 1.8290 -2.5270 -4.0035 10 1 1.8140 -0.4291 -5.2203 11 1 3.8010 -1.1157 -4.0123 12 6 2.0323 -0.7104 1.2305 13 6 2.7624 -0.0198 2.1711 14 6 3.2287 -0.6771 3.3134 15 6 3.9890 0.0375 4.2942 16 7 4.5921 0.6045 5.0723 17 6 2.9485 -2.0401 3.4951 18 8 3.3977 -2.6861 4.6008 19 6 2.2135 -2.7233 2.5422 20 6 1.7515 -2.0601 1.4146 21 8 1.0264 -2.7326 0.4845 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 3.1300 1.4424 0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 0.6912 1.1488 -3.4843 29 1 2.9750 1.0292 2.0267 30 1 2.7825 -2.6636 5.3466 31 1 1.9963 -3.7724 2.6783 32 1 1.5603 -3.1406 -0.2109 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260175694.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:22 Heat of formation + Delta-G solvation = -34.116583 kcal Electronic energy + Delta-G solvation = -17835.046002 eV Core-core repulsion = 14954.334971 eV Total energy + Delta-G solvation = -2880.711031 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.06952 -37.89985 -36.39361 -35.72233 -34.58959 -31.53837 -30.12480 -28.13601 -25.99803 -25.29608 -22.95807 -22.61422 -19.78422 -18.78459 -17.85570 -17.01508 -16.26609 -15.56774 -14.97337 -14.73601 -14.10302 -13.87915 -13.51607 -13.32995 -13.04618 -12.64252 -12.61293 -12.10651 -11.57702 -11.36260 -11.16857 -10.97133 -10.79314 -10.67014 -10.50522 -10.43413 -10.25127 -9.67137 -9.40488 -9.01332 -8.54201 -8.42573 -7.87322 -6.07903 -4.19191 0.98435 1.57718 2.89261 3.18053 3.23154 3.29422 3.31519 3.96098 4.11671 4.21218 4.32590 4.89623 5.15580 5.19541 5.55903 5.70395 5.94196 6.12611 6.31197 6.51751 6.60649 6.67623 6.79074 6.93160 7.03392 7.13756 7.31970 7.56262 7.60559 7.64390 7.72584 7.99771 8.04981 8.25171 8.31153 8.76550 9.45449 10.93020 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.028802 B = 0.007240 C = 0.006606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.931291 B = 3866.269499 C = 4237.565961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.104 3.896 3 C -0.139 4.139 4 C -0.501 4.501 5 H 0.052 0.948 6 C 0.070 3.930 7 N -0.882 5.882 8 Si 0.891 3.109 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.278 1.278 12 C -0.064 4.064 13 C -0.055 4.055 14 C -0.080 4.080 15 C 0.273 3.727 16 N -0.439 5.439 17 C 0.142 3.858 18 O -0.495 6.495 19 C -0.183 4.183 20 C 0.168 3.832 21 O -0.480 6.480 22 H 0.005 0.995 23 H 0.086 0.914 24 H 0.046 0.954 25 H 0.030 0.970 26 H 0.088 0.912 27 H 0.013 0.987 28 H 0.262 0.738 29 H 0.141 0.859 30 H 0.389 0.611 31 H 0.136 0.864 32 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.191 -5.243 6.569 8.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.104 3.896 3 C -0.197 4.197 4 C -0.539 4.539 5 H 0.070 0.930 6 C -0.132 4.132 7 N -0.520 5.520 8 Si 0.719 3.281 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.204 1.204 12 C -0.065 4.065 13 C -0.076 4.076 14 C -0.084 4.084 15 C -0.041 4.041 16 N -0.115 5.115 17 C 0.095 3.905 18 O -0.305 6.305 19 C -0.202 4.202 20 C 0.121 3.879 21 O -0.292 6.292 22 H 0.024 0.976 23 H 0.104 0.896 24 H 0.065 0.935 25 H 0.049 0.951 26 H 0.107 0.893 27 H 0.032 0.968 28 H 0.072 0.928 29 H 0.158 0.842 30 H 0.245 0.755 31 H 0.154 0.846 32 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 0.674 -4.188 7.604 8.707 hybrid contribution 0.172 -0.807 -1.140 1.407 sum 0.845 -4.995 6.464 8.213 Atomic orbital electron populations 1.21850 0.96164 1.00583 1.00092 1.17177 0.93091 0.91620 0.87716 1.21974 0.98568 0.98327 1.00794 1.20770 1.31137 1.12437 0.89552 0.93014 1.24855 0.94766 0.94909 0.98691 1.69783 1.35883 1.22820 1.23482 0.86682 0.79119 0.79828 0.82509 1.20191 1.21293 1.20407 1.21093 0.94508 0.93733 0.97147 1.21152 0.95403 1.00506 0.90490 1.16476 1.04896 0.91919 0.95085 1.25567 0.92889 0.92830 0.92804 1.81161 1.10448 1.09415 1.10498 1.17955 0.95835 0.87909 0.88832 1.84771 1.46914 1.76043 1.22802 1.21521 1.00987 1.01079 0.96663 1.18352 0.90146 0.90271 0.89099 1.84676 1.34808 1.70853 1.38884 0.97609 0.89577 0.93541 0.95125 0.89304 0.96774 0.92780 0.84151 0.75485 0.84637 0.74515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 8.06 37.16 0.30 -2.56 16 2 C 0.10 2.25 0.48 -156.81 -0.08 2.18 16 3 C -0.14 -3.00 6.92 37.16 0.26 -2.74 16 4 C -0.50 -11.73 6.70 -34.44 -0.23 -11.96 16 5 H 0.05 1.17 6.70 -52.49 -0.35 0.82 16 6 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 7 N -0.88 -22.37 9.35 55.43 0.52 -21.85 16 8 Si 0.89 19.25 29.54 -169.99 -5.02 14.23 16 9 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 10 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 12 C -0.06 -1.20 4.73 -104.52 -0.49 -1.70 16 13 C -0.06 -0.94 8.68 -39.21 -0.34 -1.28 16 14 C -0.08 -1.25 5.76 -106.60 -0.61 -1.87 16 15 C 0.27 4.47 14.87 -22.47 -0.33 4.13 16 16 N -0.44 -7.71 18.54 41.84 0.78 -6.94 16 17 C 0.14 2.05 6.71 -38.74 -0.26 1.79 16 18 O -0.50 -6.25 12.93 -18.83 -0.24 -6.49 16 19 C -0.18 -2.67 9.91 -39.34 -0.39 -3.06 16 20 C 0.17 2.85 6.16 -39.08 -0.24 2.61 16 21 O -0.48 -8.18 10.47 -18.98 -0.20 -8.38 16 22 H 0.00 0.10 8.14 -51.92 -0.42 -0.32 16 23 H 0.09 2.10 6.04 -51.93 -0.31 1.79 16 24 H 0.05 1.02 6.39 -51.93 -0.33 0.69 16 25 H 0.03 0.63 7.67 -51.93 -0.40 0.23 16 26 H 0.09 2.13 6.10 -51.93 -0.32 1.81 16 27 H 0.01 0.26 7.34 -51.93 -0.38 -0.12 16 28 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 29 H 0.14 2.34 5.87 -52.48 -0.31 2.03 16 30 H 0.39 3.05 9.06 45.56 0.41 3.46 16 31 H 0.14 1.69 8.06 -52.49 -0.42 1.26 16 32 H 0.40 5.76 8.01 45.56 0.36 6.13 16 LS Contribution 273.95 15.07 4.13 4.13 Total: -1.00 -27.12 273.95 -4.16 -31.28 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -1.60 Total: 6.86 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -2.51 Total: -12.84 kcal Atomic # 7 Polarization: -30.08 SS G_CDS: 1.29 Total: -28.79 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.44 Total: -14.87 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.23 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.12 -4.16 -31.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260175694.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.836 kcal (2) G-P(sol) polarization free energy of solvation -27.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds