Wall clock time and date at job start Mon Mar 30 2020 05:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47251 * 2 1 4 4 C 1.50701 * 109.46946 * 239.99619 * 2 1 3 5 5 H 1.08001 * 120.00233 * 239.62571 * 4 2 1 6 6 C 1.37879 * 119.99488 * 59.62930 * 4 2 1 7 7 N 1.31510 * 120.00283 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 119.99613 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.46929 * 59.99787 * 8 6 4 10 10 H 1.48495 * 109.46721 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46862 * 299.99799 * 8 6 4 12 12 C 1.50701 * 109.46843 * 120.00048 * 2 1 3 13 13 C 1.37656 * 119.88039 * 243.53151 * 12 2 1 14 14 C 1.39796 * 119.95729 * 179.97438 * 13 12 2 15 15 C 1.43199 * 120.13884 * 179.97438 * 14 13 12 16 16 N 5.95564 * 120.94009 * 83.20363 * 2 1 3 17 17 C 1.40333 * 119.72724 * 359.97438 * 14 13 12 18 18 O 1.35707 * 120.11720 * 179.97438 * 17 14 13 19 19 C 1.38380 * 119.76638 * 0.02562 * 17 14 13 20 20 C 1.38744 * 120.03374 * 359.74142 * 19 17 14 21 21 O 1.35757 * 119.86038 * 180.25363 * 20 19 17 22 22 H 1.09008 * 109.46845 * 299.99811 * 1 2 3 23 23 H 1.09000 * 109.47399 * 60.00027 * 1 2 3 24 24 H 1.09000 * 109.47305 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47208 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.46897 * 300.00280 * 3 2 1 27 27 H 1.09004 * 109.47252 * 59.99834 * 3 2 1 28 28 H 0.97000 * 120.00302 * 180.02562 * 7 6 4 29 29 H 1.08004 * 120.02164 * 359.96732 * 13 12 2 30 30 H 0.96707 * 114.00093 * 90.00580 * 18 17 14 31 31 H 1.07989 * 119.98294 * 179.97438 * 19 17 14 32 32 H 0.96702 * 113.99917 * 270.25332 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6582 -1.5851 -1.1314 6 6 1.6928 -0.2439 -2.4827 7 7 0.9303 0.8208 -2.6033 8 14 2.3160 -1.1242 -4.0079 9 1 1.8290 -2.5270 -4.0035 10 1 1.8140 -0.4291 -5.2203 11 1 3.8010 -1.1157 -4.0123 12 6 2.0323 -0.7104 1.2305 13 6 2.7624 -0.0198 2.1711 14 6 3.2287 -0.6771 3.3134 15 6 3.9890 0.0375 4.2942 16 7 4.5921 0.6045 5.0723 17 6 2.9485 -2.0401 3.4951 18 8 3.3977 -2.6861 4.6008 19 6 2.2135 -2.7233 2.5422 20 6 1.7515 -2.0601 1.4146 21 8 1.0264 -2.7326 0.4845 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 3.1300 1.4424 0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 0.6912 1.1488 -3.4843 29 1 2.9750 1.0292 2.0267 30 1 2.7825 -2.6636 5.3466 31 1 1.9963 -3.7724 2.6783 32 1 1.5603 -3.1406 -0.2109 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260175694.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:22 Heat of formation + Delta-G solvation = -52.067515 kcal Electronic energy + Delta-G solvation = -17835.824413 eV Core-core repulsion = 14954.334971 eV Total energy + Delta-G solvation = -2881.489442 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.34388 -39.12655 -37.66835 -37.17465 -36.00695 -33.24391 -31.38614 -29.53373 -27.69455 -27.12721 -24.25291 -23.96834 -21.28346 -19.96086 -19.25622 -18.43817 -17.58942 -17.07650 -16.59901 -15.97913 -15.49181 -15.13791 -14.94264 -14.69315 -14.57808 -14.10637 -13.91222 -13.55553 -13.12638 -13.09614 -12.75721 -12.59726 -12.40324 -12.26428 -12.05015 -11.96819 -11.68498 -11.37713 -10.98011 -10.67280 -10.25920 -9.77056 -9.22034 -7.91052 -6.06078 -0.26842 0.35613 1.51389 1.54259 1.57845 1.60612 1.89325 2.52242 2.75186 2.88921 3.04734 3.33417 3.67240 3.98099 4.20069 4.46158 4.71510 4.89225 4.92750 4.97050 5.07910 5.14518 5.21674 5.38592 5.54238 5.57669 5.67650 5.79109 5.81603 6.24854 6.29032 6.43041 6.50556 6.76817 6.95238 7.05314 7.60261 9.07839 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.028802 B = 0.007240 C = 0.006606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.931291 B = 3866.269499 C = 4237.565961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.099 3.901 3 C -0.132 4.132 4 C -0.501 4.501 5 H 0.058 0.942 6 C 0.026 3.974 7 N -0.907 5.907 8 Si 0.941 3.059 9 H -0.267 1.267 10 H -0.297 1.297 11 H -0.280 1.280 12 C -0.092 4.092 13 C -0.053 4.053 14 C -0.083 4.083 15 C 0.288 3.712 16 N -0.462 5.462 17 C 0.166 3.834 18 O -0.498 6.498 19 C -0.172 4.172 20 C 0.166 3.834 21 O -0.490 6.490 22 H 0.014 0.986 23 H 0.058 0.942 24 H 0.043 0.957 25 H 0.029 0.971 26 H 0.060 0.940 27 H 0.029 0.971 28 H 0.256 0.744 29 H 0.138 0.862 30 H 0.415 0.585 31 H 0.163 0.837 32 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.356 -6.959 7.885 10.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.099 3.901 3 C -0.190 4.190 4 C -0.539 4.539 5 H 0.076 0.924 6 C -0.173 4.173 7 N -0.546 5.546 8 Si 0.769 3.231 9 H -0.192 1.192 10 H -0.223 1.223 11 H -0.206 1.206 12 C -0.093 4.093 13 C -0.073 4.073 14 C -0.088 4.088 15 C -0.026 4.026 16 N -0.139 5.139 17 C 0.119 3.881 18 O -0.312 6.312 19 C -0.191 4.191 20 C 0.119 3.881 21 O -0.304 6.304 22 H 0.033 0.967 23 H 0.077 0.923 24 H 0.062 0.938 25 H 0.048 0.952 26 H 0.079 0.921 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.156 0.844 30 H 0.275 0.725 31 H 0.181 0.819 32 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 1.217 -5.922 8.944 10.795 hybrid contribution 0.014 -0.322 -1.445 1.481 sum 1.231 -6.244 7.498 9.835 Atomic orbital electron populations 1.21703 0.96986 0.99974 0.99086 1.17089 0.92557 0.91643 0.88800 1.21854 0.98394 0.98590 1.00134 1.21115 1.30249 1.12283 0.90259 0.92412 1.25466 0.95304 0.95570 1.00999 1.69934 1.37251 1.24082 1.23325 0.85877 0.78287 0.79268 0.79694 1.19178 1.22280 1.20596 1.20819 0.96848 0.94752 0.96864 1.21041 0.95151 1.00453 0.90680 1.16421 1.05247 0.92539 0.94545 1.25566 0.92341 0.92287 0.92387 1.81183 1.11318 1.10009 1.11377 1.17914 0.93925 0.87090 0.89206 1.84715 1.47884 1.75438 1.23119 1.21627 1.00026 1.02156 0.95276 1.18440 0.90069 0.89760 0.89796 1.84642 1.35478 1.70873 1.39397 0.96741 0.92305 0.93836 0.95173 0.92128 0.95170 0.93425 0.84411 0.72500 0.81930 0.73480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.32 8.06 71.98 0.58 -4.74 16 2 C 0.10 4.27 0.48 -53.67 -0.03 4.25 16 3 C -0.13 -5.73 6.92 71.98 0.50 -5.23 16 4 C -0.50 -23.28 6.70 25.60 0.17 -23.11 16 5 H 0.06 2.55 6.70 -2.91 -0.02 2.53 16 6 C 0.03 1.25 5.15 84.66 0.44 1.69 16 7 N -0.91 -47.04 9.35 21.45 0.20 -46.84 16 8 Si 0.94 39.52 29.54 68.60 2.03 41.54 16 9 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 10 H -0.30 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 12 C -0.09 -3.33 4.73 -19.80 -0.09 -3.42 16 13 C -0.05 -1.72 8.68 22.51 0.20 -1.52 16 14 C -0.08 -2.41 5.76 -21.15 -0.12 -2.53 16 15 C 0.29 8.78 14.87 88.33 1.31 10.09 16 16 N -0.46 -15.42 18.54 19.00 0.35 -15.07 16 17 C 0.17 4.20 6.71 22.81 0.15 4.35 16 18 O -0.50 -10.42 12.93 -90.28 -1.17 -11.59 16 19 C -0.17 -4.37 9.91 22.42 0.22 -4.14 16 20 C 0.17 5.26 6.16 22.59 0.14 5.39 16 21 O -0.49 -15.79 10.47 -90.83 -0.95 -16.74 16 22 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 23 H 0.06 2.93 6.04 -2.39 -0.01 2.91 16 24 H 0.04 1.90 6.39 -2.39 -0.02 1.88 16 25 H 0.03 1.25 7.67 -2.39 -0.02 1.23 16 26 H 0.06 2.97 6.10 -2.39 -0.01 2.96 16 27 H 0.03 1.16 7.34 -2.38 -0.02 1.14 16 28 H 0.26 13.04 8.31 -92.71 -0.77 12.27 16 29 H 0.14 4.47 5.87 -2.91 -0.02 4.45 16 30 H 0.41 4.58 9.06 -74.05 -0.67 3.91 16 31 H 0.16 3.27 8.06 -2.92 -0.02 3.25 16 32 H 0.40 11.08 8.01 -74.06 -0.59 10.49 16 Total: -1.00 -57.01 273.95 3.85 -53.15 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -0.07 Total: 14.47 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: 3.47 Total: -18.93 kcal Atomic # 7 Polarization: -62.46 SS G_CDS: 0.55 Total: -61.91 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -2.12 Total: -28.33 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.54 kcal Total: -57.01 3.85 -53.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260175694.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.083 kcal (2) G-P(sol) polarization free energy of solvation -57.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds