Wall clock time and date at job start Mon Mar 30 2020 05:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29855 * 126.33731 * 2 1 4 4 O 1.41331 * 109.67990 * 180.26341 * 3 2 1 5 5 C 1.34803 * 109.40493 * 0.02562 * 4 3 2 6 6 N 1.32598 * 133.09081 * 180.02562 * 5 4 3 7 7 C 1.31825 * 121.90025 * 179.97438 * 6 5 4 8 8 C 1.38185 * 121.62853 * 0.02562 * 7 6 5 9 9 C 1.39225 * 119.28432 * 359.96474 * 8 7 6 10 10 N 1.38698 * 121.05017 * 180.02562 * 9 8 7 11 11 C 1.46501 * 120.00181 * 0.02562 * 10 9 8 12 12 H 1.08996 * 109.46842 * 35.00050 * 11 10 9 13 13 C 1.52999 * 109.46967 * 275.00141 * 11 10 9 14 14 C 1.50698 * 109.47315 * 155.00226 * 11 10 9 15 15 H 1.08006 * 119.99489 * 359.97438 * 14 11 10 16 16 C 1.37870 * 120.00045 * 180.02562 * 14 11 10 17 17 N 1.31515 * 120.00322 * 359.97438 * 16 14 11 18 18 Si 1.86807 * 119.99784 * 180.02562 * 16 14 11 19 19 H 1.48491 * 109.47260 * 89.99796 * 18 16 14 20 20 H 1.48502 * 109.46709 * 209.99749 * 18 16 14 21 21 H 1.48497 * 109.47121 * 329.99435 * 18 16 14 22 22 C 1.40367 * 106.90885 * 359.97438 * 5 4 3 23 23 H 1.09005 * 109.46969 * 269.68278 * 1 2 3 24 24 H 1.08998 * 109.47219 * 29.68044 * 1 2 3 25 25 H 1.08996 * 109.47704 * 149.68554 * 1 2 3 26 26 H 1.07997 * 119.19037 * 180.02562 * 7 6 5 27 27 H 1.07997 * 120.35237 * 179.97438 * 8 7 6 28 28 H 0.96996 * 119.99987 * 180.02562 * 10 9 8 29 29 H 1.08998 * 109.47066 * 60.00449 * 13 11 10 30 30 H 1.08999 * 109.46720 * 179.97438 * 13 11 10 31 31 H 1.08996 * 109.47265 * 299.99649 * 13 11 10 32 32 H 0.96993 * 119.99992 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2765 1.0460 0.0000 4 8 3.6304 0.6409 -0.0061 5 6 3.6951 -0.7055 -0.0106 6 7 4.7057 -1.5639 -0.0165 7 6 4.5121 -2.8679 -0.0195 8 6 3.2419 -3.4119 -0.0172 9 6 2.1378 -2.5638 -0.0109 10 7 0.8466 -3.0703 -0.0079 11 6 0.6280 -4.5189 -0.0108 12 1 1.4081 -5.0053 0.5748 13 6 0.6715 -5.0383 -1.4493 14 6 -0.7182 -4.8251 0.5933 15 1 -1.3478 -4.0209 0.9447 16 6 -1.1457 -6.1316 0.6983 17 7 -0.3788 -7.1108 0.2708 18 14 -2.8148 -6.5110 1.4465 19 1 -3.8457 -6.5207 0.3777 20 1 -2.7713 -7.8416 2.1045 21 1 -3.1541 -5.4723 2.4521 22 6 2.3732 -1.1777 -0.0068 23 1 -0.3633 -0.0057 1.0277 24 1 -0.3633 0.8928 -0.5088 25 1 -0.3634 -0.8871 -0.5187 26 1 5.3674 -3.5273 -0.0239 27 1 3.1071 -4.4835 -0.0202 28 1 0.0884 -2.4655 -0.0038 29 1 1.6452 -4.8169 -1.8862 30 1 0.5092 -6.1161 -1.4515 31 1 -0.1087 -4.5519 -2.0349 32 1 -0.6794 -8.0300 0.3450 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260178707.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:01 Heat of formation + Delta-G solvation = 70.491555 kcal Electronic energy + Delta-G solvation = -17596.255617 eV Core-core repulsion = 14752.373486 eV Total energy + Delta-G solvation = -2843.882131 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.54531 -38.56937 -36.50479 -34.40407 -33.05560 -30.56989 -30.08618 -28.74630 -28.00213 -25.50923 -23.39044 -23.02318 -20.80024 -20.01988 -17.93456 -17.58294 -16.25539 -16.16154 -16.00088 -15.12994 -14.53243 -13.79212 -13.68518 -13.52938 -13.28108 -13.05999 -12.91767 -12.60987 -12.18637 -12.07900 -11.52660 -11.30193 -11.10670 -10.95196 -10.76691 -10.50458 -10.40166 -9.80246 -9.32218 -9.16866 -8.74803 -8.66513 -7.28502 -6.37596 -4.47707 0.97422 1.70845 2.33603 2.52419 3.10293 3.18447 3.19690 3.78779 4.06955 4.07724 4.19940 4.42511 4.93603 4.96371 5.05925 5.27192 5.36208 5.43488 5.54970 5.80645 5.98437 6.11545 6.26313 6.43475 6.66674 6.71846 6.78243 7.06214 7.39787 7.45120 7.53766 7.71861 7.91281 8.20470 8.22319 8.57667 9.20725 10.68450 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.030501 B = 0.006354 C = 0.005510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.797186 B = 4405.320489 C = 5080.172824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.157 3.843 3 N -0.309 5.309 4 O -0.095 6.095 5 C 0.328 3.672 6 N -0.544 5.544 7 C 0.201 3.799 8 C -0.293 4.293 9 C 0.343 3.657 10 N -0.688 5.688 11 C 0.258 3.742 12 H 0.050 0.950 13 C -0.154 4.154 14 C -0.540 4.540 15 H 0.063 0.937 16 C 0.070 3.930 17 N -0.882 5.882 18 Si 0.904 3.096 19 H -0.278 1.278 20 H -0.283 1.283 21 H -0.273 1.273 22 C -0.338 4.338 23 H 0.097 0.903 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.167 0.833 27 H 0.149 0.851 28 H 0.395 0.605 29 H 0.017 0.983 30 H 0.095 0.905 31 H 0.031 0.969 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.645 5.881 -1.067 6.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.022 4.022 3 N -0.059 5.059 4 O -0.097 6.097 5 C 0.144 3.856 6 N -0.271 5.271 7 C 0.045 3.955 8 C -0.320 4.320 9 C 0.217 3.783 10 N -0.306 5.306 11 C 0.157 3.843 12 H 0.068 0.932 13 C -0.213 4.213 14 C -0.578 4.578 15 H 0.081 0.919 16 C -0.134 4.134 17 N -0.519 5.519 18 Si 0.731 3.269 19 H -0.204 1.204 20 H -0.209 1.209 21 H -0.197 1.197 22 C -0.351 4.351 23 H 0.115 0.885 24 H 0.107 0.893 25 H 0.106 0.894 26 H 0.184 0.816 27 H 0.167 0.833 28 H 0.231 0.769 29 H 0.036 0.964 30 H 0.114 0.886 31 H 0.051 0.949 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.524 7.126 -1.080 7.637 hybrid contribution -2.060 -1.232 0.362 2.428 sum 0.464 5.894 -0.718 5.956 Atomic orbital electron populations 1.20550 0.85146 1.04610 1.04671 1.24177 0.97527 0.89945 0.90556 1.79944 0.84279 1.17221 1.24498 1.89110 1.23190 1.15860 1.81547 1.20270 0.89330 0.85688 0.90317 1.66769 1.32019 1.02452 1.25902 1.22421 0.96338 0.88604 0.88143 1.21621 0.91577 1.01448 1.17364 1.17732 0.87530 0.88734 0.84296 1.45970 1.02735 1.10576 1.71367 1.19039 0.97983 0.73090 0.94201 0.93249 1.22201 0.97242 1.04883 0.96981 1.21112 1.01832 0.92974 1.41876 0.91922 1.24853 0.97833 0.95842 0.94840 1.69847 1.36852 0.99883 1.45356 0.86399 0.83170 0.77994 0.79350 1.20363 1.20858 1.19746 1.20775 0.93707 0.93595 1.27006 0.88477 0.89253 0.89389 0.81609 0.83318 0.76879 0.96390 0.88611 0.94940 0.92245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.06 9.86 36.01 0.36 -0.71 16 2 C 0.16 2.50 7.46 -80.23 -0.60 1.90 16 3 N -0.31 -5.41 12.82 34.84 0.45 -4.97 16 4 O -0.09 -1.82 12.06 7.74 0.09 -1.73 16 5 C 0.33 6.21 8.64 -16.42 -0.14 6.07 16 6 N -0.54 -9.81 10.38 -13.08 -0.14 -9.94 16 7 C 0.20 3.12 11.13 -17.57 -0.20 2.92 16 8 C -0.29 -4.97 8.95 -39.23 -0.35 -5.32 16 9 C 0.34 6.18 6.70 -83.50 -0.56 5.62 16 10 N -0.69 -12.74 5.21 -53.01 -0.28 -13.01 16 11 C 0.26 5.58 2.27 -69.08 -0.16 5.42 16 12 H 0.05 1.16 6.55 -51.93 -0.34 0.82 16 13 C -0.15 -3.27 9.25 37.16 0.34 -2.93 16 14 C -0.54 -12.87 8.73 -34.44 -0.30 -13.17 16 15 H 0.06 1.45 7.74 -52.48 -0.41 1.05 16 16 C 0.07 1.72 5.30 -17.82 -0.09 1.63 16 17 N -0.88 -22.34 11.32 55.43 0.63 -21.71 16 18 Si 0.90 19.12 29.54 -169.99 -5.02 14.10 16 19 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 20 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 C -0.34 -6.04 6.28 -105.01 -0.66 -6.70 16 23 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 24 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.09 0.99 6.02 -51.93 -0.31 0.68 16 26 H 0.17 1.90 8.06 -52.49 -0.42 1.48 16 27 H 0.15 2.50 6.35 -52.49 -0.33 2.17 16 28 H 0.39 6.66 5.61 -40.82 -0.23 6.43 16 29 H 0.02 0.34 7.82 -51.93 -0.41 -0.07 16 30 H 0.10 2.24 6.07 -51.93 -0.32 1.92 16 31 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 LS Contribution 274.16 15.07 4.13 4.13 Total: -1.00 -27.26 274.16 -5.66 -32.92 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -3.17 Total: 5.46 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -2.36 Total: -5.25 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: 0.66 Total: -49.63 kcal Atomic # 8 Polarization: -1.82 SS G_CDS: 0.09 Total: -1.73 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.10 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.26 -5.66 -32.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260178707.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.414 kcal (2) G-P(sol) polarization free energy of solvation -27.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds