Wall clock time and date at job start Mon Mar 30 2020 05:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29855 * 126.33731 * 2 1 4 4 O 1.41331 * 109.67990 * 180.26341 * 3 2 1 5 5 C 1.34803 * 109.40493 * 0.02562 * 4 3 2 6 6 N 1.32598 * 133.09081 * 180.02562 * 5 4 3 7 7 C 1.31825 * 121.90025 * 179.97438 * 6 5 4 8 8 C 1.38185 * 121.62853 * 0.02562 * 7 6 5 9 9 C 1.39225 * 119.28432 * 359.96474 * 8 7 6 10 10 N 1.38698 * 121.05017 * 180.02562 * 9 8 7 11 11 C 1.46501 * 120.00181 * 0.02562 * 10 9 8 12 12 H 1.08996 * 109.46842 * 35.00050 * 11 10 9 13 13 C 1.52999 * 109.46967 * 275.00141 * 11 10 9 14 14 C 1.50698 * 109.47315 * 155.00226 * 11 10 9 15 15 H 1.08006 * 119.99489 * 359.97438 * 14 11 10 16 16 C 1.37870 * 120.00045 * 180.02562 * 14 11 10 17 17 N 1.31515 * 120.00322 * 359.97438 * 16 14 11 18 18 Si 1.86807 * 119.99784 * 180.02562 * 16 14 11 19 19 H 1.48491 * 109.47260 * 89.99796 * 18 16 14 20 20 H 1.48502 * 109.46709 * 209.99749 * 18 16 14 21 21 H 1.48497 * 109.47121 * 329.99435 * 18 16 14 22 22 C 1.40367 * 106.90885 * 359.97438 * 5 4 3 23 23 H 1.09005 * 109.46969 * 269.68278 * 1 2 3 24 24 H 1.08998 * 109.47219 * 29.68044 * 1 2 3 25 25 H 1.08996 * 109.47704 * 149.68554 * 1 2 3 26 26 H 1.07997 * 119.19037 * 180.02562 * 7 6 5 27 27 H 1.07997 * 120.35237 * 179.97438 * 8 7 6 28 28 H 0.96996 * 119.99987 * 180.02562 * 10 9 8 29 29 H 1.08998 * 109.47066 * 60.00449 * 13 11 10 30 30 H 1.08999 * 109.46720 * 179.97438 * 13 11 10 31 31 H 1.08996 * 109.47265 * 299.99649 * 13 11 10 32 32 H 0.96993 * 119.99992 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2765 1.0460 0.0000 4 8 3.6304 0.6409 -0.0061 5 6 3.6951 -0.7055 -0.0106 6 7 4.7057 -1.5639 -0.0165 7 6 4.5121 -2.8679 -0.0195 8 6 3.2419 -3.4119 -0.0172 9 6 2.1378 -2.5638 -0.0109 10 7 0.8466 -3.0703 -0.0079 11 6 0.6280 -4.5189 -0.0108 12 1 1.4081 -5.0053 0.5748 13 6 0.6715 -5.0383 -1.4493 14 6 -0.7182 -4.8251 0.5933 15 1 -1.3478 -4.0209 0.9447 16 6 -1.1457 -6.1316 0.6983 17 7 -0.3788 -7.1108 0.2708 18 14 -2.8148 -6.5110 1.4465 19 1 -3.8457 -6.5207 0.3777 20 1 -2.7713 -7.8416 2.1045 21 1 -3.1541 -5.4723 2.4521 22 6 2.3732 -1.1777 -0.0068 23 1 -0.3633 -0.0057 1.0277 24 1 -0.3633 0.8928 -0.5088 25 1 -0.3634 -0.8871 -0.5187 26 1 5.3674 -3.5273 -0.0239 27 1 3.1071 -4.4835 -0.0202 28 1 0.0884 -2.4655 -0.0038 29 1 1.6452 -4.8169 -1.8862 30 1 0.5092 -6.1161 -1.4515 31 1 -0.1087 -4.5519 -2.0349 32 1 -0.6794 -8.0300 0.3450 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260178707.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:01 Heat of formation + Delta-G solvation = 52.328892 kcal Electronic energy + Delta-G solvation = -17597.043209 eV Core-core repulsion = 14752.373486 eV Total energy + Delta-G solvation = -2844.669723 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.89784 -39.95997 -37.98993 -35.81093 -34.67576 -32.14803 -31.41932 -29.97138 -29.39736 -27.31933 -24.72415 -24.48637 -22.36544 -21.38249 -19.39408 -18.98449 -17.85469 -17.60333 -17.36893 -16.77518 -16.00945 -15.29787 -15.06260 -14.58247 -14.54461 -14.46008 -14.38853 -13.71809 -13.68723 -13.48926 -13.14676 -12.95687 -12.73093 -12.46242 -12.22621 -12.16247 -12.00916 -11.25951 -11.05741 -10.59573 -10.49406 -10.04516 -8.74459 -8.20976 -6.36160 -0.34871 0.32500 1.03186 1.17123 1.44376 1.47446 1.55065 2.27541 2.50191 2.71916 2.87246 3.11215 3.14460 3.62503 3.79685 4.09458 4.25732 4.38620 4.51913 4.64010 4.65964 4.74408 4.94126 4.98316 5.03784 5.05697 5.34503 5.48075 5.60445 5.80694 6.02610 6.07945 6.27504 6.63369 6.85570 6.87312 7.35410 8.84165 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.030501 B = 0.006354 C = 0.005510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.797186 B = 4405.320489 C = 5080.172824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.166 3.834 3 N -0.320 5.320 4 O -0.118 6.118 5 C 0.309 3.691 6 N -0.556 5.556 7 C 0.211 3.789 8 C -0.300 4.300 9 C 0.333 3.667 10 N -0.688 5.688 11 C 0.267 3.733 12 H 0.029 0.971 13 C -0.143 4.143 14 C -0.552 4.552 15 H 0.067 0.933 16 C 0.027 3.973 17 N -0.908 5.908 18 Si 0.960 3.040 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.268 1.268 22 C -0.345 4.345 23 H 0.116 0.884 24 H 0.112 0.888 25 H 0.092 0.908 26 H 0.209 0.791 27 H 0.149 0.851 28 H 0.403 0.597 29 H 0.030 0.970 30 H 0.073 0.927 31 H 0.032 0.968 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.938 6.215 -0.922 6.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.013 4.013 3 N -0.074 5.074 4 O -0.118 6.118 5 C 0.125 3.875 6 N -0.284 5.284 7 C 0.056 3.944 8 C -0.327 4.327 9 C 0.209 3.791 10 N -0.308 5.308 11 C 0.165 3.835 12 H 0.047 0.953 13 C -0.202 4.202 14 C -0.590 4.590 15 H 0.085 0.915 16 C -0.175 4.175 17 N -0.546 5.546 18 Si 0.786 3.214 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.193 1.193 22 C -0.358 4.358 23 H 0.134 0.866 24 H 0.131 0.869 25 H 0.110 0.890 26 H 0.225 0.775 27 H 0.167 0.833 28 H 0.240 0.760 29 H 0.049 0.951 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.842 7.486 -0.936 7.766 hybrid contribution -1.781 -1.319 0.315 2.239 sum 0.061 6.167 -0.621 6.199 Atomic orbital electron populations 1.20782 0.81977 1.05953 1.06220 1.24811 0.99233 0.88656 0.88622 1.79940 0.83630 1.17781 1.26012 1.89071 1.24572 1.16167 1.82003 1.20562 0.90145 0.85832 0.90931 1.66863 1.32164 1.03254 1.26098 1.23068 0.97227 0.88125 0.86009 1.21786 0.92043 1.01428 1.17445 1.17864 0.87531 0.89014 0.84643 1.45649 1.03320 1.09389 1.72477 1.18710 0.96422 0.74624 0.93788 0.95282 1.22034 0.97951 1.03259 0.96968 1.21464 1.02735 0.93170 1.41617 0.91510 1.25551 1.00658 0.95920 0.95347 1.69956 1.38207 1.00048 1.46379 0.85512 0.79745 0.77504 0.78627 1.20035 1.21195 1.19292 1.20928 0.93915 0.93945 1.26987 0.86608 0.86901 0.88969 0.77455 0.83318 0.75951 0.95056 0.90877 0.94916 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.88 9.86 71.24 0.70 -1.18 16 2 C 0.17 5.03 7.46 44.92 0.33 5.37 16 3 N -0.32 -10.94 12.82 -43.68 -0.56 -11.50 16 4 O -0.12 -4.53 12.06 30.11 0.36 -4.17 16 5 C 0.31 11.53 8.64 85.10 0.74 12.26 16 6 N -0.56 -19.42 10.38 -308.47 -3.20 -22.62 16 7 C 0.21 6.18 11.13 84.68 0.94 7.12 16 8 C -0.30 -9.81 8.95 22.49 0.20 -9.61 16 9 C 0.33 11.67 6.70 38.87 0.26 11.93 16 10 N -0.69 -24.67 5.21 -321.63 -1.68 -26.35 16 11 C 0.27 11.38 2.27 44.24 0.10 11.48 16 12 H 0.03 1.37 6.55 -2.39 -0.02 1.35 16 13 C -0.14 -5.99 9.25 71.98 0.67 -5.32 16 14 C -0.55 -25.82 8.73 25.60 0.22 -25.59 16 15 H 0.07 3.00 7.74 -2.91 -0.02 2.97 16 16 C 0.03 1.28 5.30 84.65 0.45 1.73 16 17 N -0.91 -45.94 11.32 21.44 0.24 -45.70 16 18 Si 0.96 38.52 29.54 68.60 2.03 40.55 16 19 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 20 H -0.29 -11.54 7.11 99.48 0.71 -10.83 16 21 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 22 C -0.35 -12.00 6.28 -20.12 -0.13 -12.12 16 23 H 0.12 2.00 8.14 -2.38 -0.02 1.98 16 24 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.09 1.84 6.02 -2.39 -0.01 1.83 16 26 H 0.21 4.12 8.06 -2.91 -0.02 4.10 16 27 H 0.15 4.88 6.35 -2.91 -0.02 4.86 16 28 H 0.40 12.93 5.61 -92.71 -0.52 12.41 16 29 H 0.03 1.18 7.82 -2.39 -0.02 1.16 16 30 H 0.07 3.42 6.07 -2.39 -0.01 3.40 16 31 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.27 12.95 8.31 -92.71 -0.77 12.18 16 Total: -1.00 -57.41 274.16 2.33 -55.09 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.64 Total: 18.63 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: 4.49 Total: -3.94 kcal Atomic # 7 Polarization: -100.96 SS G_CDS: -5.20 Total: -106.16 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: 0.36 Total: -4.17 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 2.03 Total: 40.55 kcal Total: -57.41 2.33 -55.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260178707.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.415 kcal (2) G-P(sol) polarization free energy of solvation -57.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds