Wall clock time and date at job start Mon Mar 30 2020 06:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.36796 * 125.07596 * 265.02136 * 3 2 1 5 5 C 1.34251 * 109.92585 * 180.02562 * 4 3 2 6 6 C 1.50695 * 126.49872 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.47241 * 265.03007 * 6 5 4 8 8 H 1.08000 * 119.99869 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00027 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99977 * 179.97438 * 9 7 6 11 11 Si 1.86806 * 120.00009 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47082 * 89.99970 * 11 9 7 13 13 H 1.48496 * 109.46784 * 209.99843 * 11 9 7 14 14 H 1.48500 * 109.46776 * 329.99662 * 11 9 7 15 15 C 1.46481 * 107.00895 * 0.02562 * 5 4 3 16 16 C 1.39702 * 134.01238 * 180.02562 * 15 5 4 17 17 C 1.36605 * 119.80756 * 179.97438 * 16 15 5 18 18 C 1.38842 * 120.54674 * 0.02562 * 17 16 15 19 19 C 1.37936 * 120.63445 * 359.97438 * 18 17 16 20 20 F 1.35103 * 120.12908 * 180.02562 * 19 18 17 21 21 C 1.37778 * 125.07157 * 84.72410 * 3 2 1 22 22 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 23 23 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 26 26 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 27 27 H 1.08001 * 125.03781 * 359.97438 * 4 3 2 28 28 H 1.09003 * 109.46648 * 25.02634 * 6 5 4 29 29 H 1.08994 * 109.47572 * 145.02406 * 6 5 4 30 30 H 0.97003 * 120.00111 * 179.97438 * 10 9 7 31 31 H 1.07993 * 120.09396 * 0.02562 * 16 15 5 32 32 H 1.07995 * 119.72737 * 180.02562 * 17 16 15 33 33 H 1.08004 * 119.67931 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3719 2.0900 -1.1153 5 6 2.7756 3.3217 -0.7657 6 6 3.2466 4.4087 -1.6971 7 6 4.7505 4.3752 -1.7884 8 1 5.3093 3.6406 -1.2276 9 6 5.4130 5.2824 -2.5878 10 7 6.7254 5.2535 -2.6670 11 14 4.4465 6.5535 -3.5572 12 1 4.2762 7.7784 -2.7352 13 1 5.1825 6.8911 -4.8020 14 1 3.1126 6.0013 -3.9051 15 6 2.6726 3.4085 0.6929 16 6 2.9415 4.4120 1.6270 17 6 2.7354 4.1750 2.9564 18 6 2.2608 2.9439 3.3885 19 6 1.9886 1.9387 2.4840 20 9 1.5267 0.7447 2.9156 21 6 2.1844 2.1622 1.1228 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 2.3329 1.7141 -2.1270 28 1 2.8190 4.2494 -2.6870 29 1 2.9273 5.3782 -1.3152 30 1 7.1915 5.8915 -3.2297 31 1 3.3104 5.3724 1.2989 32 1 2.9433 4.9518 3.6773 33 1 2.1025 2.7718 4.4429 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260180503.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:06 Heat of formation + Delta-G solvation = 6.104368 kcal Electronic energy + Delta-G solvation = -17472.073346 eV Core-core repulsion = 14605.479215 eV Total energy + Delta-G solvation = -2866.594130 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.58703 -40.83177 -36.78484 -34.23316 -32.63950 -30.86991 -29.39167 -28.78030 -26.96077 -23.55801 -22.51070 -22.15615 -20.88243 -19.00968 -16.81450 -16.71280 -16.60524 -15.68753 -15.48224 -14.90161 -14.59117 -14.22311 -14.17538 -13.88570 -13.09363 -12.72630 -12.42548 -12.35885 -12.14202 -11.88650 -11.60804 -11.37691 -11.10410 -10.95323 -10.87086 -10.40872 -10.23150 -9.98441 -9.34782 -8.76312 -8.53267 -7.84321 -6.91871 -6.02192 -4.00155 1.39563 1.88694 3.10390 3.24492 3.31498 3.39257 3.41745 4.21931 4.45357 4.55520 4.75398 4.92549 5.06196 5.20688 5.27751 5.30577 5.36295 5.58338 5.59650 5.68772 5.87833 6.00631 6.02750 6.24327 6.42662 6.48976 6.62197 6.90434 7.04861 7.15507 7.26172 7.40800 7.68837 7.71403 7.80746 8.58143 9.05130 9.58724 11.11057 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.026543 B = 0.006814 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.657884 B = 4108.041083 C = 4743.961665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.108 3.892 3 N -0.482 5.482 4 C 0.025 3.975 5 C -0.103 4.103 6 C 0.048 3.952 7 C -0.508 4.508 8 H 0.072 0.928 9 C 0.067 3.933 10 N -0.902 5.902 11 Si 0.876 3.124 12 H -0.276 1.276 13 H -0.288 1.288 14 H -0.265 1.265 15 C -0.076 4.076 16 C -0.057 4.057 17 C -0.141 4.141 18 C -0.139 4.139 19 C 0.071 3.929 20 F -0.152 7.152 21 C 0.065 3.935 22 H 0.059 0.941 23 H 0.061 0.939 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.166 0.834 28 H 0.026 0.974 29 H 0.023 0.977 30 H 0.263 0.737 31 H 0.131 0.869 32 H 0.126 0.874 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.990 -7.167 7.574 15.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.014 4.014 3 N -0.166 5.166 4 C -0.097 4.097 5 C -0.109 4.109 6 C 0.010 3.990 7 C -0.546 4.546 8 H 0.091 0.909 9 C -0.134 4.134 10 N -0.542 5.542 11 Si 0.703 3.297 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.189 1.189 15 C -0.082 4.082 16 C -0.076 4.076 17 C -0.161 4.161 18 C -0.159 4.159 19 C 0.050 3.950 20 F -0.131 7.131 21 C -0.042 4.042 22 H 0.078 0.922 23 H 0.081 0.919 24 H 0.088 0.912 25 H 0.101 0.899 26 H 0.107 0.893 27 H 0.183 0.817 28 H 0.044 0.956 29 H 0.041 0.959 30 H 0.073 0.927 31 H 0.149 0.851 32 H 0.144 0.856 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.963 -7.477 7.434 15.946 hybrid contribution -0.348 0.342 -0.460 0.670 sum -12.311 -7.135 6.974 15.846 Atomic orbital electron populations 1.22170 0.95097 1.02382 1.02939 1.21697 0.95028 0.80827 1.03854 1.43808 1.56907 1.11514 1.04386 1.21588 1.05107 0.92329 0.90636 1.20755 1.02552 0.96177 0.91384 1.18168 0.96985 0.91317 0.92482 1.21011 0.88972 1.17202 1.27446 0.90943 1.25000 0.94713 0.97238 0.96404 1.69908 1.07113 1.37176 1.39956 0.86836 0.80637 0.82304 0.79910 1.20192 1.21401 1.18937 1.19122 1.02681 0.92300 0.94089 1.20475 0.96656 0.98766 0.91687 1.20359 1.03504 0.96534 0.95675 1.20660 1.03615 0.93121 0.98456 1.16607 1.06852 0.82584 0.89004 1.91398 1.87175 1.44177 1.90338 1.18178 1.05948 0.93131 0.86964 0.92151 0.91947 0.91204 0.89913 0.89350 0.81721 0.95584 0.95882 0.92734 0.85106 0.85608 0.85352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 10.24 37.16 0.38 -1.45 16 2 C 0.11 1.36 6.43 -4.04 -0.03 1.34 16 3 N -0.48 -8.14 2.78 -114.37 -0.32 -8.46 16 4 C 0.03 0.47 11.19 -16.74 -0.19 0.28 16 5 C -0.10 -2.19 5.50 -102.71 -0.57 -2.76 16 6 C 0.05 1.15 4.57 -29.04 -0.13 1.01 16 7 C -0.51 -14.35 9.65 -34.44 -0.33 -14.69 16 8 H 0.07 2.27 7.98 -52.49 -0.42 1.85 16 9 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 10 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 11 Si 0.88 21.19 27.47 -169.99 -4.67 16.52 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.26 -6.10 6.54 56.52 0.37 -5.73 16 15 C -0.08 -1.54 6.35 -105.14 -0.67 -2.21 16 16 C -0.06 -1.04 10.05 -39.62 -0.40 -1.44 16 17 C -0.14 -2.14 9.97 -39.95 -0.40 -2.54 16 18 C -0.14 -2.07 9.99 -39.47 -0.39 -2.46 16 19 C 0.07 1.19 7.32 -39.29 -0.29 0.90 16 20 F -0.15 -2.38 15.98 2.25 0.04 -2.34 16 21 C 0.07 1.20 6.82 -83.90 -0.57 0.63 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.08 1.04 7.22 -51.93 -0.37 0.66 16 26 H 0.09 0.95 8.12 -51.93 -0.42 0.52 16 27 H 0.17 2.61 8.06 -52.49 -0.42 2.19 16 28 H 0.03 0.60 7.20 -51.93 -0.37 0.23 16 29 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.13 2.34 8.06 -52.49 -0.42 1.91 16 32 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 33 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 LS Contribution 287.56 15.07 4.33 4.33 Total: -1.00 -31.46 287.56 -7.63 -39.09 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -4.11 Total: -0.76 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: -3.68 Total: -21.54 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 0.46 Total: -35.30 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.04 Total: -2.34 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.46 -7.63 -39.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260180503.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.193 kcal (2) G-P(sol) polarization free energy of solvation -31.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds