Wall clock time and date at job start Mon Mar 30 2020 06:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.36796 * 125.07596 * 265.02136 * 3 2 1 5 5 C 1.34251 * 109.92585 * 180.02562 * 4 3 2 6 6 C 1.50695 * 126.49872 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.47241 * 265.03007 * 6 5 4 8 8 H 1.08000 * 119.99869 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00027 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99977 * 179.97438 * 9 7 6 11 11 Si 1.86806 * 120.00009 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47082 * 89.99970 * 11 9 7 13 13 H 1.48496 * 109.46784 * 209.99843 * 11 9 7 14 14 H 1.48500 * 109.46776 * 329.99662 * 11 9 7 15 15 C 1.46481 * 107.00895 * 0.02562 * 5 4 3 16 16 C 1.39702 * 134.01238 * 180.02562 * 15 5 4 17 17 C 1.36605 * 119.80756 * 179.97438 * 16 15 5 18 18 C 1.38842 * 120.54674 * 0.02562 * 17 16 15 19 19 C 1.37936 * 120.63445 * 359.97438 * 18 17 16 20 20 F 1.35103 * 120.12908 * 180.02562 * 19 18 17 21 21 C 1.37778 * 125.07157 * 84.72410 * 3 2 1 22 22 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 23 23 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 26 26 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 27 27 H 1.08001 * 125.03781 * 359.97438 * 4 3 2 28 28 H 1.09003 * 109.46648 * 25.02634 * 6 5 4 29 29 H 1.08994 * 109.47572 * 145.02406 * 6 5 4 30 30 H 0.97003 * 120.00111 * 179.97438 * 10 9 7 31 31 H 1.07993 * 120.09396 * 0.02562 * 16 15 5 32 32 H 1.07995 * 119.72737 * 180.02562 * 17 16 15 33 33 H 1.08004 * 119.67931 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3719 2.0900 -1.1153 5 6 2.7756 3.3217 -0.7657 6 6 3.2466 4.4087 -1.6971 7 6 4.7505 4.3752 -1.7884 8 1 5.3093 3.6406 -1.2276 9 6 5.4130 5.2824 -2.5878 10 7 6.7254 5.2535 -2.6670 11 14 4.4465 6.5535 -3.5572 12 1 4.2762 7.7784 -2.7352 13 1 5.1825 6.8911 -4.8020 14 1 3.1126 6.0013 -3.9051 15 6 2.6726 3.4085 0.6929 16 6 2.9415 4.4120 1.6270 17 6 2.7354 4.1750 2.9564 18 6 2.2608 2.9439 3.3885 19 6 1.9886 1.9387 2.4840 20 9 1.5267 0.7447 2.9156 21 6 2.1844 2.1622 1.1228 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 2.3329 1.7141 -2.1270 28 1 2.8190 4.2494 -2.6870 29 1 2.9273 5.3782 -1.3152 30 1 7.1915 5.8915 -3.2297 31 1 3.3104 5.3724 1.2989 32 1 2.9433 4.9518 3.6773 33 1 2.1025 2.7718 4.4429 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260180503.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:05 Heat of formation + Delta-G solvation = -10.936979 kcal Electronic energy + Delta-G solvation = -17472.812314 eV Core-core repulsion = 14605.479215 eV Total energy + Delta-G solvation = -2867.333099 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.84388 -42.17741 -38.04397 -35.82419 -34.41320 -32.36579 -30.89912 -30.07738 -28.50146 -24.98351 -24.10491 -23.48409 -22.18145 -20.46772 -18.89286 -18.13710 -17.88758 -16.95301 -16.76452 -16.22530 -16.19478 -15.75035 -15.45432 -15.02903 -14.70282 -14.38404 -13.83631 -13.79010 -13.54530 -13.18367 -13.00081 -12.63973 -12.52569 -12.34620 -12.19187 -11.99455 -11.93292 -11.73069 -11.50924 -10.73154 -10.20596 -9.18438 -8.33870 -8.22626 -6.27524 0.05838 0.58469 1.40744 1.41785 1.54136 1.78694 1.86805 2.40280 2.85403 3.10511 3.27639 3.68754 3.75870 3.96959 4.06377 4.12345 4.34368 4.41638 4.45691 4.62346 4.75989 4.82646 4.85629 4.99223 5.09324 5.11732 5.16305 5.28051 5.52324 5.61001 5.68039 5.85305 5.93473 6.26505 6.36005 6.44376 6.78900 7.35512 8.93262 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.026543 B = 0.006814 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.657884 B = 4108.041083 C = 4743.961665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.099 3.901 3 N -0.480 5.480 4 C 0.042 3.958 5 C -0.156 4.156 6 C 0.059 3.941 7 C -0.512 4.512 8 H 0.022 0.978 9 C 0.006 3.994 10 N -0.953 5.953 11 Si 0.950 3.050 12 H -0.267 1.267 13 H -0.284 1.284 14 H -0.243 1.243 15 C -0.107 4.107 16 C -0.087 4.087 17 C -0.125 4.125 18 C -0.130 4.130 19 C 0.065 3.935 20 F -0.145 7.145 21 C 0.048 3.952 22 H 0.044 0.956 23 H 0.060 0.940 24 H 0.099 0.901 25 H 0.084 0.916 26 H 0.111 0.889 27 H 0.189 0.811 28 H 0.035 0.965 29 H 0.023 0.977 30 H 0.266 0.734 31 H 0.121 0.879 32 H 0.161 0.839 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.127 -7.614 8.227 18.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.021 4.021 3 N -0.163 5.163 4 C -0.082 4.082 5 C -0.163 4.163 6 C 0.022 3.978 7 C -0.550 4.550 8 H 0.040 0.960 9 C -0.190 4.190 10 N -0.594 5.594 11 Si 0.773 3.227 12 H -0.192 1.192 13 H -0.210 1.210 14 H -0.166 1.166 15 C -0.112 4.112 16 C -0.106 4.106 17 C -0.145 4.145 18 C -0.149 4.149 19 C 0.043 3.957 20 F -0.124 7.124 21 C -0.059 4.059 22 H 0.063 0.937 23 H 0.079 0.921 24 H 0.118 0.882 25 H 0.103 0.897 26 H 0.129 0.871 27 H 0.205 0.795 28 H 0.053 0.947 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.139 0.861 32 H 0.179 0.821 33 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -14.130 -7.959 8.114 18.134 hybrid contribution 0.350 0.356 -0.533 0.730 sum -13.780 -7.603 7.581 17.469 Atomic orbital electron populations 1.22111 0.93487 1.04045 1.02065 1.22053 0.96317 0.78655 1.05083 1.44095 1.56051 1.12686 1.03486 1.21872 1.02820 0.91545 0.91991 1.20648 1.06294 0.97172 0.92137 1.17923 0.93656 0.92605 0.93650 1.21220 0.91485 1.15842 1.26440 0.96008 1.25974 0.95677 0.99710 0.97653 1.70076 1.09275 1.38668 1.41413 0.85662 0.79791 0.79167 0.78077 1.19231 1.21023 1.16589 1.19367 1.04015 0.93874 0.93977 1.20631 0.98444 0.98429 0.93098 1.20737 1.01295 0.97523 0.94903 1.21108 1.01692 0.92134 1.00008 1.16795 1.06911 0.83303 0.88650 1.91411 1.87063 1.43829 1.90121 1.18400 1.06469 0.92941 0.88125 0.93717 0.92062 0.88239 0.89720 0.87127 0.79452 0.94723 0.95855 0.92548 0.86105 0.82116 0.81654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 10.24 71.98 0.74 -2.35 16 2 C 0.10 2.30 6.43 86.38 0.56 2.86 16 3 N -0.48 -15.79 2.78 -515.77 -1.43 -17.23 16 4 C 0.04 1.53 11.19 83.01 0.93 2.46 16 5 C -0.16 -6.82 5.50 -18.63 -0.10 -6.92 16 6 C 0.06 2.88 4.57 29.10 0.13 3.01 16 7 C -0.51 -30.09 9.65 25.60 0.25 -29.85 16 8 H 0.02 1.45 7.98 -2.91 -0.02 1.42 16 9 C 0.01 0.36 5.47 84.65 0.46 0.82 16 10 N -0.95 -60.37 13.96 21.45 0.30 -60.08 16 11 Si 0.95 43.98 27.47 68.60 1.88 45.87 16 12 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 13 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 14 H -0.24 -10.28 6.54 99.48 0.65 -9.63 16 15 C -0.11 -4.39 6.35 -20.20 -0.13 -4.52 16 16 C -0.09 -3.21 10.05 22.24 0.22 -2.99 16 17 C -0.13 -3.58 9.97 22.03 0.22 -3.36 16 18 C -0.13 -3.52 9.99 22.34 0.22 -3.30 16 19 C 0.07 2.07 7.32 22.46 0.16 2.23 16 20 F -0.15 -4.23 15.98 44.97 0.72 -3.51 16 21 C 0.05 1.76 6.82 39.04 0.27 2.03 16 22 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.08 1.95 7.22 -2.39 -0.02 1.93 16 26 H 0.11 2.07 8.12 -2.39 -0.02 2.05 16 27 H 0.19 5.73 8.06 -2.91 -0.02 5.70 16 28 H 0.03 1.59 7.20 -2.39 -0.02 1.57 16 29 H 0.02 1.10 7.57 -2.39 -0.02 1.09 16 30 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 31 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 32 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 33 H 0.17 3.24 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -71.13 287.56 6.45 -64.68 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 1.05 Total: 10.15 kcal Atomic # 6 Polarization: -43.81 SS G_CDS: 3.93 Total: -39.88 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -1.13 Total: -77.30 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.72 Total: -3.51 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.88 Total: 45.87 kcal Total: -71.13 6.45 -64.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260180503.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.743 kcal (2) G-P(sol) polarization free energy of solvation -71.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds