Wall clock time and date at job start Mon Mar 30 2020 06:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46500 * 109.47025 * 2 1 4 4 C 1.36900 * 125.06910 * 265.02133 * 3 2 1 5 5 C 1.34206 * 109.92286 * 180.02562 * 4 3 2 6 6 C 1.50700 * 126.49685 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.46869 * 265.02117 * 6 5 4 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99942 * 179.72213 * 7 6 5 10 10 N 1.31514 * 119.99698 * 0.28408 * 9 7 6 11 11 Si 1.86794 * 119.99837 * 180.27476 * 9 7 6 12 12 H 1.48504 * 109.47196 * 60.00645 * 11 9 7 13 13 H 1.48504 * 109.46887 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47679 * 300.00280 * 11 9 7 15 15 C 1.46524 * 107.00118 * 0.26597 * 5 4 3 16 16 C 1.39633 * 133.98737 * 180.43830 * 15 5 4 17 17 C 1.36608 * 119.80064 * 179.57778 * 16 15 5 18 18 C 1.39035 * 120.50430 * 359.74867 * 17 16 15 19 19 F 1.35096 * 119.69636 * 179.97438 * 18 17 16 20 20 C 1.37952 * 120.60740 * 359.97438 * 18 17 16 21 21 C 1.37685 * 125.06304 * 85.02855 * 3 2 1 22 22 H 1.08998 * 109.47479 * 299.99439 * 1 2 3 23 23 H 1.08998 * 109.47099 * 59.99883 * 1 2 3 24 24 H 1.09006 * 109.47028 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46876 * 240.00193 * 2 1 3 26 26 H 1.08994 * 109.47134 * 120.00639 * 2 1 3 27 27 H 1.08003 * 125.03806 * 0.02562 * 4 3 2 28 28 H 1.09004 * 109.47210 * 145.02410 * 6 5 4 29 29 H 1.08994 * 109.47551 * 25.02062 * 6 5 4 30 30 H 0.97005 * 119.99651 * 179.97438 * 10 9 7 31 31 H 1.07994 * 120.10152 * 359.30608 * 16 15 5 32 32 H 1.07998 * 119.75143 * 179.72057 * 17 16 15 33 33 H 1.07991 * 120.11834 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.3721 2.0904 -1.1162 5 6 2.7757 3.3217 -0.7669 6 6 3.2458 4.4089 -1.6985 7 6 4.7496 4.3758 -1.7909 8 1 5.3090 3.6408 -1.2312 9 6 5.4111 5.2800 -2.5947 10 7 4.7299 6.1749 -3.2765 11 14 7.2746 5.2340 -2.7151 12 1 7.7046 3.9108 -3.2344 13 1 7.7375 6.3023 -3.6369 14 1 7.8632 5.4527 -1.3694 15 6 2.6782 3.4065 0.6927 16 6 2.9428 4.4113 1.6255 17 6 2.7367 4.1746 2.9551 18 6 2.2602 2.9419 3.3870 19 9 2.0628 2.7254 4.7058 20 6 1.9871 1.9379 2.4812 21 6 2.1898 2.1595 1.1227 22 1 -0.3634 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8932 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 2.3323 1.7147 -2.1280 28 1 2.9266 5.3784 -1.3160 29 1 2.8175 4.2498 -2.6881 30 1 5.1953 6.8112 -3.8417 31 1 3.3135 5.3710 1.2974 32 1 2.9460 4.9508 3.6763 33 1 1.6177 0.9833 2.8254 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260190032.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:09 Heat of formation + Delta-G solvation = 1.543465 kcal Electronic energy + Delta-G solvation = -17222.803342 eV Core-core repulsion = 14356.011436 eV Total energy + Delta-G solvation = -2866.791906 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.56518 -40.85034 -36.52616 -34.25066 -32.69479 -30.93972 -29.35934 -28.37618 -26.55452 -23.73760 -22.79944 -22.05953 -20.78736 -18.94758 -16.88242 -16.62558 -16.18556 -15.80343 -15.31724 -14.91927 -14.56433 -14.34886 -14.19553 -13.33814 -13.19315 -12.79055 -12.43379 -12.17711 -12.16293 -12.02947 -11.66543 -11.30075 -10.97859 -10.80902 -10.63688 -10.55698 -10.26010 -9.71411 -9.46478 -8.86206 -8.37062 -7.68251 -6.94091 -5.97994 -4.01859 1.43759 1.89853 3.14130 3.31227 3.34536 3.38829 3.44163 4.24645 4.49984 4.60608 4.74620 5.01932 5.04725 5.21642 5.32550 5.34113 5.40507 5.52899 5.58253 5.65856 5.91725 5.98617 6.01358 6.36077 6.43876 6.59153 6.67451 6.90671 7.24931 7.36664 7.54329 7.62724 7.83205 7.94101 7.97912 8.41516 9.03353 9.61661 11.10546 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.021141 B = 0.006723 C = 0.005555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.129976 B = 4164.062020 C = 5038.948091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.110 3.890 3 N -0.487 5.487 4 C 0.011 3.989 5 C -0.098 4.098 6 C 0.080 3.920 7 C -0.508 4.508 8 H 0.055 0.945 9 C 0.058 3.942 10 N -0.896 5.896 11 Si 0.892 3.108 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.277 1.277 15 C -0.110 4.110 16 C -0.020 4.020 17 C -0.197 4.197 18 C 0.107 3.893 19 F -0.149 7.149 20 C -0.177 4.177 21 C 0.119 3.881 22 H 0.060 0.940 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.163 0.837 28 H 0.028 0.972 29 H 0.027 0.973 30 H 0.261 0.739 31 H 0.136 0.864 32 H 0.128 0.872 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.224 -9.875 8.030 14.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.012 4.012 3 N -0.172 5.172 4 C -0.110 4.110 5 C -0.104 4.104 6 C 0.043 3.957 7 C -0.546 4.546 8 H 0.073 0.927 9 C -0.143 4.143 10 N -0.536 5.536 11 Si 0.720 3.280 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.202 1.202 15 C -0.116 4.116 16 C -0.039 4.039 17 C -0.217 4.217 18 C 0.087 3.913 19 F -0.127 7.127 20 C -0.199 4.199 21 C 0.011 3.989 22 H 0.079 0.921 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.106 0.894 26 H 0.097 0.903 27 H 0.180 0.820 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.154 0.846 32 H 0.146 0.854 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.320 -10.074 7.872 14.731 hybrid contribution 1.025 -0.180 0.109 1.046 sum -6.295 -10.254 7.981 14.438 Atomic orbital electron populations 1.22196 0.95208 1.02277 1.03172 1.21608 0.94872 0.81168 1.03570 1.43842 1.57247 1.11481 1.04590 1.21575 1.06419 0.92547 0.90439 1.21250 1.01178 0.96349 0.91610 1.17733 0.95519 0.90523 0.91968 1.21085 0.91178 1.15862 1.26469 0.92672 1.24992 0.98229 0.95462 0.95631 1.69945 1.35489 1.18897 1.29241 0.86655 0.85816 0.77573 0.77967 1.20327 1.21304 1.20208 1.19345 1.04672 0.93159 0.94384 1.20269 0.94255 0.98659 0.90674 1.20485 1.07986 0.96431 0.96802 1.17119 1.02658 0.94766 0.76758 1.91432 1.93230 1.95442 1.32627 1.19563 1.10698 0.99700 0.89907 1.17793 1.01749 0.91758 0.87558 0.92110 0.91797 0.91318 0.89437 0.90323 0.81961 0.95338 0.95495 0.92889 0.84632 0.85403 0.86076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 10.24 37.15 0.38 -1.31 16 2 C 0.11 1.25 6.72 -4.04 -0.03 1.22 16 3 N -0.49 -7.87 2.78 -114.42 -0.32 -8.19 16 4 C 0.01 0.20 11.20 -16.71 -0.19 0.01 16 5 C -0.10 -2.13 5.51 -102.71 -0.57 -2.69 16 6 C 0.08 2.03 5.50 -29.03 -0.16 1.87 16 7 C -0.51 -14.09 9.09 -34.44 -0.31 -14.40 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 10 N -0.90 -26.24 13.29 55.43 0.74 -25.50 16 11 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 C -0.11 -2.23 6.35 -105.12 -0.67 -2.90 16 16 C -0.02 -0.37 10.05 -39.65 -0.40 -0.77 16 17 C -0.20 -3.23 9.95 -39.87 -0.40 -3.63 16 18 C 0.11 1.75 7.28 -39.39 -0.29 1.46 16 19 F -0.15 -2.32 17.25 2.25 0.04 -2.28 16 20 C -0.18 -2.83 9.97 -39.36 -0.39 -3.22 16 21 C 0.12 2.13 6.81 -83.99 -0.57 1.56 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.09 0.86 8.12 -51.93 -0.42 0.44 16 26 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.16 2.63 8.06 -52.48 -0.42 2.21 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.14 2.50 8.06 -52.49 -0.42 2.07 16 32 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 33 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 293.55 15.07 4.42 4.42 Total: -1.00 -30.21 293.55 -8.01 -38.23 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -4.19 Total: -1.89 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: -3.68 Total: -21.28 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: 0.42 Total: -33.69 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.21 -8.01 -38.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260190032.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.770 kcal (2) G-P(sol) polarization free energy of solvation -30.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds