Wall clock time and date at job start Mon Mar 30 2020 06:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46500 * 109.47025 * 2 1 4 4 C 1.36900 * 125.06910 * 265.02133 * 3 2 1 5 5 C 1.34206 * 109.92286 * 180.02562 * 4 3 2 6 6 C 1.50700 * 126.49685 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.46869 * 265.02117 * 6 5 4 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99942 * 179.72213 * 7 6 5 10 10 N 1.31514 * 119.99698 * 0.28408 * 9 7 6 11 11 Si 1.86794 * 119.99837 * 180.27476 * 9 7 6 12 12 H 1.48504 * 109.47196 * 60.00645 * 11 9 7 13 13 H 1.48504 * 109.46887 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47679 * 300.00280 * 11 9 7 15 15 C 1.46524 * 107.00118 * 0.26597 * 5 4 3 16 16 C 1.39633 * 133.98737 * 180.43830 * 15 5 4 17 17 C 1.36608 * 119.80064 * 179.57778 * 16 15 5 18 18 C 1.39035 * 120.50430 * 359.74867 * 17 16 15 19 19 F 1.35096 * 119.69636 * 179.97438 * 18 17 16 20 20 C 1.37952 * 120.60740 * 359.97438 * 18 17 16 21 21 C 1.37685 * 125.06304 * 85.02855 * 3 2 1 22 22 H 1.08998 * 109.47479 * 299.99439 * 1 2 3 23 23 H 1.08998 * 109.47099 * 59.99883 * 1 2 3 24 24 H 1.09006 * 109.47028 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46876 * 240.00193 * 2 1 3 26 26 H 1.08994 * 109.47134 * 120.00639 * 2 1 3 27 27 H 1.08003 * 125.03806 * 0.02562 * 4 3 2 28 28 H 1.09004 * 109.47210 * 145.02410 * 6 5 4 29 29 H 1.08994 * 109.47551 * 25.02062 * 6 5 4 30 30 H 0.97005 * 119.99651 * 179.97438 * 10 9 7 31 31 H 1.07994 * 120.10152 * 359.30608 * 16 15 5 32 32 H 1.07998 * 119.75143 * 179.72057 * 17 16 15 33 33 H 1.07991 * 120.11834 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.3721 2.0904 -1.1162 5 6 2.7757 3.3217 -0.7669 6 6 3.2458 4.4089 -1.6985 7 6 4.7496 4.3758 -1.7909 8 1 5.3090 3.6408 -1.2312 9 6 5.4111 5.2800 -2.5947 10 7 4.7299 6.1749 -3.2765 11 14 7.2746 5.2340 -2.7151 12 1 7.7046 3.9108 -3.2344 13 1 7.7375 6.3023 -3.6369 14 1 7.8632 5.4527 -1.3694 15 6 2.6782 3.4065 0.6927 16 6 2.9428 4.4113 1.6255 17 6 2.7367 4.1746 2.9551 18 6 2.2602 2.9419 3.3870 19 9 2.0628 2.7254 4.7058 20 6 1.9871 1.9379 2.4812 21 6 2.1898 2.1595 1.1227 22 1 -0.3634 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8932 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 2.3323 1.7147 -2.1280 28 1 2.9266 5.3784 -1.3160 29 1 2.8175 4.2498 -2.6881 30 1 5.1953 6.8112 -3.8417 31 1 3.3135 5.3710 1.2974 32 1 2.9460 4.9508 3.6763 33 1 1.6177 0.9833 2.8254 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260190032.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:08 Heat of formation + Delta-G solvation = -13.324962 kcal Electronic energy + Delta-G solvation = -17223.448085 eV Core-core repulsion = 14356.011436 eV Total energy + Delta-G solvation = -2867.436649 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.82558 -42.21453 -37.82404 -35.86686 -34.40651 -32.27746 -30.97059 -29.71244 -28.18142 -25.26754 -24.35167 -23.36717 -22.06498 -20.42586 -18.45013 -18.17242 -17.85139 -17.12425 -16.58725 -16.46028 -16.09857 -15.59992 -15.36174 -14.62833 -14.47735 -14.36171 -14.05266 -13.69503 -13.62937 -13.40971 -12.95429 -12.80730 -12.56167 -12.27885 -12.05638 -11.96449 -11.93862 -11.53011 -11.46035 -10.54280 -10.36843 -9.04399 -8.46347 -8.06311 -6.25378 0.06559 0.54440 1.41058 1.43645 1.51523 1.85292 1.90898 2.45133 2.84479 3.16508 3.34267 3.73187 3.84909 4.01400 4.13066 4.19788 4.25418 4.43145 4.46384 4.61366 4.82524 4.85184 4.94234 5.04654 5.12003 5.19696 5.25370 5.38847 5.48402 5.70043 5.81341 5.88173 5.98540 6.28059 6.33336 6.53432 6.86861 7.42550 8.95073 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.021141 B = 0.006723 C = 0.005555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.129976 B = 4164.062020 C = 5038.948091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.100 3.900 3 N -0.478 5.478 4 C 0.036 3.964 5 C -0.153 4.153 6 C 0.094 3.906 7 C -0.521 4.521 8 H 0.049 0.951 9 C 0.006 3.994 10 N -0.931 5.931 11 Si 0.959 3.041 12 H -0.268 1.268 13 H -0.281 1.281 14 H -0.272 1.272 15 C -0.140 4.140 16 C -0.046 4.046 17 C -0.186 4.186 18 C 0.104 3.896 19 F -0.141 7.141 20 C -0.163 4.163 21 C 0.113 3.887 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.099 0.901 25 H 0.107 0.893 26 H 0.098 0.902 27 H 0.183 0.817 28 H -0.003 1.003 29 H 0.006 0.994 30 H 0.264 0.736 31 H 0.121 0.879 32 H 0.151 0.849 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.172 -12.353 9.239 17.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.020 4.020 3 N -0.162 5.162 4 C -0.088 4.088 5 C -0.159 4.159 6 C 0.056 3.944 7 C -0.559 4.559 8 H 0.067 0.933 9 C -0.192 4.192 10 N -0.571 5.571 11 Si 0.783 3.217 12 H -0.193 1.193 13 H -0.206 1.206 14 H -0.197 1.197 15 C -0.145 4.145 16 C -0.065 4.065 17 C -0.206 4.206 18 C 0.084 3.916 19 F -0.120 7.120 20 C -0.184 4.184 21 C 0.004 3.996 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.118 0.882 25 H 0.126 0.874 26 H 0.116 0.884 27 H 0.200 0.800 28 H 0.015 0.985 29 H 0.024 0.976 30 H 0.073 0.927 31 H 0.139 0.861 32 H 0.168 0.832 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -7.286 -12.587 9.105 17.158 hybrid contribution 0.927 0.533 -0.218 1.091 sum -6.359 -12.054 8.887 16.270 Atomic orbital electron populations 1.22156 0.93891 1.03994 1.02181 1.22059 0.95896 0.78433 1.05598 1.44111 1.55982 1.12893 1.03214 1.21752 1.03533 0.91589 0.91885 1.20907 1.05549 0.97116 0.92284 1.17358 0.94517 0.90755 0.91739 1.21378 0.92569 1.15705 1.26242 0.93289 1.25844 1.03137 0.94981 0.95192 1.70069 1.37453 1.19637 1.29970 0.85603 0.79904 0.78027 0.78130 1.19295 1.20595 1.19716 1.19540 1.06062 0.95025 0.93889 1.20264 0.96161 0.98290 0.91748 1.20669 1.06455 0.97310 0.96118 1.17150 1.02549 0.94715 0.77185 1.91455 1.93134 1.95361 1.32003 1.19816 1.09020 1.00788 0.88800 1.17918 1.01885 0.91095 0.88682 0.93053 0.92854 0.88214 0.87438 0.88365 0.79995 0.98505 0.97551 0.92707 0.86065 0.83160 0.82883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 10.24 71.98 0.74 -1.96 16 2 C 0.10 1.91 6.72 86.38 0.58 2.49 16 3 N -0.48 -14.52 2.78 -515.92 -1.43 -15.95 16 4 C 0.04 1.29 11.20 82.98 0.93 2.22 16 5 C -0.15 -6.86 5.51 -18.62 -0.10 -6.96 16 6 C 0.09 5.07 5.50 29.10 0.16 5.23 16 7 C -0.52 -29.98 9.09 25.60 0.23 -29.74 16 8 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 9 C 0.01 0.36 5.46 84.66 0.46 0.82 16 10 N -0.93 -56.22 13.29 21.45 0.28 -55.94 16 11 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 13 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 14 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 15 C -0.14 -5.79 6.35 -20.19 -0.13 -5.91 16 16 C -0.05 -1.77 10.05 22.23 0.22 -1.55 16 17 C -0.19 -5.95 9.95 22.08 0.22 -5.73 16 18 C 0.10 3.17 7.28 22.39 0.16 3.33 16 19 F -0.14 -3.98 17.25 44.97 0.78 -3.20 16 20 C -0.16 -4.76 9.97 22.41 0.22 -4.53 16 21 C 0.11 3.86 6.81 39.03 0.27 4.12 16 22 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 25 H 0.11 1.67 8.12 -2.39 -0.02 1.65 16 26 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.18 5.72 8.06 -2.91 -0.02 5.69 16 28 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 29 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.26 15.01 8.31 -92.70 -0.77 14.24 16 31 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 32 H 0.15 4.01 8.06 -2.91 -0.02 3.98 16 33 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -67.05 293.55 6.72 -60.33 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: 1.10 Total: 6.27 kcal Atomic # 6 Polarization: -42.13 SS G_CDS: 3.97 Total: -38.16 kcal Atomic # 7 Polarization: -70.74 SS G_CDS: -1.15 Total: -71.89 kcal Atomic # 9 Polarization: -3.98 SS G_CDS: 0.78 Total: -3.20 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -67.05 6.72 -60.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260190032.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.009 kcal (2) G-P(sol) polarization free energy of solvation -67.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds