Wall clock time and date at job start Mon Mar 30 2020 05:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29924 * 126.29682 * 2 1 4 4 O 1.41434 * 109.69035 * 179.97438 * 3 2 1 5 5 C 1.34387 * 109.30100 * 359.97438 * 4 3 2 6 6 C 1.39334 * 134.55873 * 179.97438 * 5 4 3 7 7 C 1.36682 * 119.19049 * 180.02562 * 6 5 4 8 8 N 1.32283 * 121.70945 * 0.04460 * 7 6 5 9 9 C 1.32372 * 122.08722 * 359.97113 * 8 7 6 10 10 N 1.38491 * 120.08572 * 179.97438 * 9 8 7 11 11 C 1.46500 * 119.99689 * 0.02562 * 10 9 8 12 12 H 1.08992 * 109.47359 * 325.00072 * 11 10 9 13 13 C 1.53004 * 109.46850 * 85.00214 * 11 10 9 14 14 C 1.50702 * 109.46882 * 204.99905 * 11 10 9 15 15 H 1.07996 * 120.00132 * 0.02562 * 14 11 10 16 16 C 1.37879 * 119.99859 * 180.02562 * 14 11 10 17 17 N 1.31514 * 120.00046 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 120.00041 * 179.97438 * 16 14 11 19 19 H 1.48496 * 109.46928 * 59.99988 * 18 16 14 20 20 H 1.48500 * 109.47400 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47196 * 300.00461 * 18 16 14 22 22 C 1.40329 * 119.82836 * 0.02562 * 9 8 7 23 23 H 1.09000 * 109.46980 * 90.03002 * 1 2 3 24 24 H 1.09001 * 109.47175 * 210.02487 * 1 2 3 25 25 H 1.08996 * 109.47371 * 330.03127 * 1 2 3 26 26 H 1.07990 * 120.40479 * 0.05040 * 6 5 4 27 27 H 1.07996 * 119.14557 * 180.02562 * 7 6 5 28 28 H 0.96997 * 120.00208 * 180.02562 * 10 9 8 29 29 H 1.09000 * 109.46967 * 59.99838 * 13 11 10 30 30 H 1.08999 * 109.46882 * 179.97438 * 13 11 10 31 31 H 1.08993 * 109.47011 * 299.99443 * 13 11 10 32 32 H 0.96999 * 119.99782 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0471 0.0000 4 8 3.6314 0.6429 0.0006 5 6 3.6946 -0.6995 0.0015 6 6 4.7323 -1.6293 0.0020 7 6 4.4324 -2.9628 0.0025 8 7 3.1819 -3.3943 0.0016 9 6 2.1514 -2.5635 0.0009 10 7 0.8588 -3.0606 -0.0005 11 6 0.6306 -4.5077 -0.0005 12 1 1.4062 -4.9978 -0.5890 13 6 0.6737 -5.0308 1.4367 14 6 -0.7190 -4.8034 -0.6025 15 1 -1.3440 -3.9944 -0.9505 16 6 -1.1558 -6.1069 -0.7088 17 7 -0.3949 -7.0921 -0.2844 18 14 -2.8289 -6.4734 -1.4542 19 1 -2.8711 -5.9660 -2.8491 20 1 -3.0607 -7.9402 -1.4533 21 1 -3.8852 -5.8052 -0.6523 22 6 2.3721 -1.1776 0.0004 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3634 0.8902 0.5133 26 1 5.7609 -1.3004 0.0023 27 1 5.2372 -3.6829 0.0032 28 1 0.1046 -2.4507 -0.0014 29 1 -0.1019 -4.5407 2.0251 30 1 0.5035 -6.1074 1.4367 31 1 1.6498 -4.8170 1.8720 32 1 -0.7023 -8.0090 -0.3589 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260208086.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:51 Heat of formation + Delta-G solvation = 54.155149 kcal Electronic energy + Delta-G solvation = -17599.254804 eV Core-core repulsion = 14754.664273 eV Total energy + Delta-G solvation = -2844.590531 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.95167 -40.06606 -37.59010 -35.75483 -34.51346 -32.25230 -31.77586 -29.90875 -29.21858 -27.28074 -24.69212 -24.41364 -22.34214 -21.44652 -19.35281 -18.76764 -18.07171 -17.32608 -17.22650 -16.83533 -16.20414 -15.39530 -15.01435 -14.72001 -14.50346 -14.43569 -14.38531 -13.93369 -13.68712 -13.09096 -12.95330 -12.83537 -12.65065 -12.43780 -12.26739 -12.11998 -11.88379 -11.12248 -10.88241 -10.57745 -10.49179 -10.38257 -8.63879 -8.15411 -6.32071 -0.30842 0.38712 0.98725 1.42600 1.47048 1.47526 1.55239 2.28075 2.50857 2.83261 3.04801 3.13343 3.15558 3.61082 3.76703 4.11979 4.29016 4.41620 4.51906 4.58134 4.75155 4.83549 4.97250 5.03310 5.08756 5.14994 5.37035 5.51573 5.65998 5.84238 6.06106 6.11450 6.29806 6.62893 6.77251 7.31471 7.42453 8.89811 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.030459 B = 0.006410 C = 0.005550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.060697 B = 4367.324163 C = 5044.048171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.164 3.836 3 N -0.331 5.331 4 O -0.114 6.114 5 C 0.147 3.853 6 C -0.255 4.255 7 C 0.204 3.796 8 N -0.589 5.589 9 C 0.478 3.522 10 N -0.683 5.683 11 C 0.279 3.721 12 H 0.022 0.978 13 C -0.132 4.132 14 C -0.554 4.554 15 H 0.068 0.932 16 C 0.022 3.978 17 N -0.911 5.911 18 Si 0.965 3.035 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.266 1.266 22 C -0.346 4.346 23 H 0.115 0.885 24 H 0.090 0.910 25 H 0.113 0.887 26 H 0.173 0.827 27 H 0.203 0.797 28 H 0.407 0.593 29 H 0.029 0.971 30 H 0.068 0.932 31 H 0.020 0.980 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.841 9.485 0.850 10.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.015 4.015 3 N -0.083 5.083 4 O -0.117 6.117 5 C 0.086 3.914 6 C -0.281 4.281 7 C 0.047 3.953 8 N -0.312 5.312 9 C 0.232 3.768 10 N -0.310 5.310 11 C 0.176 3.824 12 H 0.040 0.960 13 C -0.191 4.191 14 C -0.592 4.592 15 H 0.086 0.914 16 C -0.179 4.179 17 N -0.549 5.549 18 Si 0.790 3.210 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.191 1.191 22 C -0.357 4.357 23 H 0.134 0.866 24 H 0.109 0.891 25 H 0.131 0.869 26 H 0.191 0.809 27 H 0.220 0.780 28 H 0.246 0.754 29 H 0.048 0.952 30 H 0.087 0.913 31 H 0.039 0.961 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.783 9.541 0.869 10.300 hybrid contribution -0.766 -0.138 -0.296 0.833 sum 3.017 9.403 0.573 9.892 Atomic orbital electron populations 1.20772 0.82232 1.05866 1.06203 1.24851 0.99258 0.88490 0.88884 1.79892 0.84448 1.18177 1.25755 1.88972 1.24016 1.17514 1.81214 1.20630 0.95229 0.84802 0.90734 1.20781 0.99025 0.90728 1.17539 1.22815 0.92616 0.93855 0.85998 1.67596 0.99861 1.38037 1.25691 1.18224 0.87611 0.85570 0.85354 1.45516 1.02616 1.09630 1.73190 1.18457 0.95601 0.74902 0.93437 0.96028 1.21905 0.97034 1.02834 0.97369 1.21528 1.02609 0.93295 1.41780 0.91356 1.25652 1.00998 0.95816 0.95420 1.70013 1.38479 0.99875 1.46545 0.85509 0.79566 0.76984 0.78961 1.19784 1.21155 1.19109 1.21090 0.93591 0.94227 1.26839 0.86648 0.89114 0.86887 0.80947 0.78019 0.75361 0.95173 0.91339 0.96064 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.98 9.84 71.23 0.70 -1.28 16 2 C 0.16 5.00 7.45 44.89 0.33 5.33 16 3 N -0.33 -10.93 12.82 -43.70 -0.56 -11.49 16 4 O -0.11 -3.93 12.05 34.02 0.41 -3.52 16 5 C 0.15 4.88 7.56 23.12 0.17 5.05 16 6 C -0.26 -6.91 10.08 22.17 0.22 -6.69 16 7 C 0.20 5.84 11.08 84.26 0.93 6.77 16 8 N -0.59 -22.48 9.20 -193.55 -1.78 -24.26 16 9 C 0.48 18.38 7.50 133.54 1.00 19.38 16 10 N -0.68 -27.37 5.20 -327.52 -1.70 -29.07 16 11 C 0.28 13.45 2.58 44.25 0.11 13.56 16 12 H 0.02 1.20 7.54 -2.39 -0.02 1.19 16 13 C -0.13 -6.29 9.27 71.98 0.67 -5.62 16 14 C -0.55 -27.97 8.73 25.60 0.22 -27.75 16 15 H 0.07 3.24 7.74 -2.91 -0.02 3.22 16 16 C 0.02 1.13 5.30 84.66 0.45 1.58 16 17 N -0.91 -49.68 11.32 21.45 0.24 -49.44 16 18 Si 0.96 40.43 29.54 68.60 2.03 42.46 16 19 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 20 H -0.29 -11.94 7.11 99.48 0.71 -11.24 16 21 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 22 C -0.35 -12.02 6.28 -20.14 -0.13 -12.15 16 23 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 24 H 0.09 1.93 6.00 -2.39 -0.01 1.92 16 25 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.17 3.36 8.06 -2.92 -0.02 3.33 16 27 H 0.20 4.01 8.06 -2.91 -0.02 3.98 16 28 H 0.41 14.25 5.53 -92.71 -0.51 13.74 16 29 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 3.58 6.07 -2.39 -0.01 3.56 16 31 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 Total: -1.00 -62.69 277.00 3.97 -58.71 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 0.64 Total: 18.43 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: 4.70 Total: -1.81 kcal Atomic # 7 Polarization: -110.46 SS G_CDS: -3.80 Total: -114.27 kcal Atomic # 8 Polarization: -3.93 SS G_CDS: 0.41 Total: -3.52 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal Total: -62.69 3.97 -58.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260208086.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.867 kcal (2) G-P(sol) polarization free energy of solvation -62.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds