Wall clock time and date at job start Mon Mar 30 2020 06:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46907 * 2 1 4 4 C 1.50702 * 109.47006 * 119.99565 * 2 1 3 5 5 H 1.08004 * 120.00131 * 5.69978 * 4 2 1 6 6 C 1.37878 * 119.99963 * 185.70463 * 4 2 1 7 7 N 1.31513 * 120.00328 * 349.14478 * 6 4 2 8 8 Si 1.86800 * 119.99805 * 168.87867 * 6 4 2 9 9 H 1.48499 * 109.47274 * 89.99576 * 8 6 4 10 10 H 1.48507 * 109.47032 * 209.99475 * 8 6 4 11 11 H 1.48505 * 109.47278 * 329.99140 * 8 6 4 12 12 C 1.50695 * 109.47605 * 239.99933 * 2 1 3 13 13 C 1.38843 * 119.67974 * 246.08731 * 12 2 1 14 14 C 1.36602 * 120.54288 * 179.75865 * 13 12 2 15 15 C 1.39702 * 119.80729 * 0.50569 * 14 13 12 16 16 C 1.46483 * 134.00425 * 179.74430 * 15 14 13 17 17 C 1.34246 * 107.00636 * 180.02562 * 16 15 14 18 18 N 1.36799 * 109.92471 * 359.97438 * 17 16 15 19 19 H 0.97001 * 125.07066 * 179.97438 * 18 17 16 20 20 C 1.37769 * 109.85394 * 0.02562 * 18 17 16 21 21 C 1.37939 * 119.68637 * 66.35346 * 12 2 1 22 22 F 1.35100 * 120.12360 * 359.96592 * 21 12 2 23 23 H 1.08998 * 109.47741 * 304.53938 * 1 2 3 24 24 H 1.09004 * 109.46807 * 64.54059 * 1 2 3 25 25 H 1.09001 * 109.47153 * 184.53147 * 1 2 3 26 26 H 1.08998 * 109.47212 * 185.66435 * 3 2 1 27 27 H 1.08996 * 109.47091 * 305.65890 * 3 2 1 28 28 H 1.08994 * 109.47568 * 65.66304 * 3 2 1 29 29 H 0.97008 * 119.99542 * 1.21053 * 7 6 4 30 30 H 1.07998 * 119.72541 * 0.02562 * 13 12 2 31 31 H 1.08003 * 120.09089 * 180.28063 * 14 13 12 32 32 H 1.07999 * 126.49997 * 359.96340 * 16 15 14 33 33 H 1.08006 * 125.04149 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 1.3348 -1.2004 1.8937 6 6 3.3823 -0.7345 1.5098 7 7 4.2481 -0.3298 0.6063 8 14 3.9811 -1.3350 3.1742 9 1 4.2197 -2.7995 3.1155 10 1 5.2463 -0.6410 3.5250 11 1 2.9534 -1.0418 4.2054 12 6 2.0324 -0.7104 -1.2304 13 6 2.7226 -1.9079 -1.0991 14 6 3.1816 -2.5692 -2.2028 15 6 2.9648 -2.0323 -3.4742 16 6 3.3127 -2.4586 -4.8317 17 6 2.8351 -1.5258 -5.6707 18 7 2.2094 -0.5373 -4.9615 19 1 1.7860 0.2444 -5.3495 20 6 2.2714 -0.8173 -3.6140 21 6 1.8070 -0.1619 -2.4758 22 9 1.1383 1.0063 -2.5913 23 1 -0.3634 0.5826 0.8465 24 1 -0.3633 0.4418 -0.9279 25 1 -0.3633 -1.0245 0.0812 26 1 3.1252 1.4443 -0.1014 27 1 1.5962 1.9847 -0.8349 28 1 1.7618 1.9263 0.9363 29 1 3.9359 0.0021 -0.2501 30 1 2.8942 -2.3222 -0.1166 31 1 3.7137 -3.5026 -2.0925 32 1 3.8521 -3.3532 -5.1057 33 1 2.9306 -1.5517 -6.7462 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260210942.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:08 Heat of formation + Delta-G solvation = 10.140014 kcal Electronic energy + Delta-G solvation = -18366.895322 eV Core-core repulsion = 15500.476191 eV Total energy + Delta-G solvation = -2866.419132 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.12260 -40.57866 -37.65154 -34.37026 -31.50236 -30.67116 -28.52873 -27.55725 -26.06278 -24.62186 -22.24671 -21.47877 -20.25751 -19.17109 -17.97050 -16.80926 -15.92966 -15.03857 -14.73984 -14.64028 -14.00105 -13.74790 -13.56095 -13.18101 -13.00315 -12.61959 -12.40179 -12.09947 -11.30308 -11.16117 -10.93406 -10.75911 -10.60287 -10.57701 -10.44772 -10.08069 -9.81047 -9.63453 -8.94896 -8.45314 -8.25045 -7.46992 -7.00050 -6.24254 -4.07986 1.71731 2.33596 3.10781 3.42312 3.45967 3.48841 3.62780 4.50709 4.60037 5.02881 5.14597 5.27767 5.42537 5.74807 5.92807 5.99497 6.13522 6.32849 6.36349 6.46230 6.53996 6.64973 6.77319 6.90073 6.92068 7.08823 7.14887 7.23013 7.29208 7.45992 7.56243 7.71646 7.85458 7.95089 8.28536 8.44816 8.86911 9.62495 11.01720 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.028294 B = 0.008930 C = 0.007460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.385106 B = 3134.843677 C = 3752.280885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.081 3.919 3 C -0.144 4.144 4 C -0.593 4.593 5 H 0.054 0.946 6 C 0.024 3.976 7 N -0.898 5.898 8 Si 1.063 2.937 9 H -0.288 1.288 10 H -0.285 1.285 11 H -0.289 1.289 12 C -0.043 4.043 13 C -0.067 4.067 14 C -0.106 4.106 15 C -0.100 4.100 16 C -0.205 4.205 17 C 0.036 3.964 18 N -0.596 5.596 19 H 0.411 0.589 20 C 0.055 3.945 21 C 0.054 3.946 22 F -0.150 7.150 23 H 0.046 0.954 24 H 0.032 0.968 25 H 0.042 0.958 26 H 0.061 0.939 27 H 0.031 0.969 28 H 0.042 0.958 29 H 0.281 0.719 30 H 0.151 0.849 31 H 0.116 0.884 32 H 0.142 0.858 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.837 -1.996 -9.013 9.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.081 3.919 3 C -0.202 4.202 4 C -0.630 4.630 5 H 0.072 0.928 6 C -0.182 4.182 7 N -0.535 5.535 8 Si 0.891 3.109 9 H -0.215 1.215 10 H -0.210 1.210 11 H -0.215 1.215 12 C -0.045 4.045 13 C -0.085 4.085 14 C -0.125 4.125 15 C -0.104 4.104 16 C -0.231 4.231 17 C -0.091 4.091 18 N -0.200 5.200 19 H 0.246 0.754 20 C -0.051 4.051 21 C 0.032 3.968 22 F -0.129 7.129 23 H 0.065 0.935 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.080 0.920 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.096 0.904 30 H 0.168 0.832 31 H 0.134 0.866 32 H 0.159 0.841 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.529 -2.123 -8.195 8.602 hybrid contribution -1.567 0.899 -1.247 2.195 sum -3.096 -1.223 -9.442 10.012 Atomic orbital electron populations 1.21711 0.96752 1.00070 0.99299 1.17378 0.91675 0.92253 0.90610 1.22055 1.02140 0.96845 0.99148 1.21795 0.94796 1.38216 1.08236 0.92774 1.25704 0.93189 0.95856 1.03449 1.70791 1.37303 1.38297 1.07097 0.83639 0.75772 0.76387 0.75076 1.21469 1.21027 1.21487 1.20644 0.95962 0.95312 0.92630 1.21011 0.94675 0.93455 0.99386 1.20344 1.01569 1.00244 0.90368 1.18993 1.02786 0.94836 0.93804 1.21590 1.09051 1.01720 0.90760 1.21631 1.00135 0.90266 0.97022 1.41594 1.51397 1.22649 1.04337 0.75365 1.18170 1.05233 0.98273 0.83462 1.16705 1.03439 0.84937 0.91720 1.91328 1.78869 1.46011 1.96647 0.93501 0.94859 0.93911 0.92046 0.94962 0.93877 0.90437 0.83193 0.86607 0.84070 0.81907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 8.31 37.16 0.31 -2.35 16 2 C 0.08 1.99 0.49 -156.81 -0.08 1.91 16 3 C -0.14 -3.51 7.68 37.16 0.29 -3.22 16 4 C -0.59 -15.59 6.74 -34.44 -0.23 -15.82 16 5 H 0.05 1.43 7.77 -52.48 -0.41 1.02 16 6 C 0.02 0.64 3.82 -17.82 -0.07 0.58 16 7 N -0.90 -25.30 11.90 55.43 0.66 -24.64 16 8 Si 1.06 24.03 29.92 -169.99 -5.09 18.95 16 9 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 12 C -0.04 -1.02 3.41 -104.51 -0.36 -1.38 16 13 C -0.07 -1.56 7.41 -39.95 -0.30 -1.85 16 14 C -0.11 -2.20 10.05 -39.63 -0.40 -2.60 16 15 C -0.10 -1.97 6.37 -105.15 -0.67 -2.64 16 16 C -0.21 -3.23 11.08 -37.67 -0.42 -3.65 16 17 C 0.04 0.49 11.81 -16.74 -0.20 0.29 16 18 N -0.60 -9.31 6.07 -10.61 -0.06 -9.37 16 19 H 0.41 5.24 8.96 -40.82 -0.37 4.87 16 20 C 0.05 1.10 7.26 -83.91 -0.61 0.49 16 21 C 0.05 1.19 6.77 -39.29 -0.27 0.92 16 22 F -0.15 -3.20 13.41 2.25 0.03 -3.17 16 23 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.03 0.69 6.70 -51.93 -0.35 0.34 16 25 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 1.61 5.49 -51.93 -0.29 1.33 16 27 H 0.03 0.72 6.02 -51.93 -0.31 0.41 16 28 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.28 7.97 3.95 -40.82 -0.16 7.81 16 30 H 0.15 3.76 5.56 -52.49 -0.29 3.47 16 31 H 0.12 2.11 8.06 -52.48 -0.42 1.68 16 32 H 0.14 1.84 8.06 -52.49 -0.42 1.41 16 33 H 0.16 1.47 8.06 -52.48 -0.42 1.05 16 LS Contribution 266.89 15.07 4.02 4.02 Total: -1.00 -29.48 266.89 -6.94 -36.42 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -3.51 Total: 7.13 kcal Atomic # 6 Polarization: -26.33 SS G_CDS: -2.99 Total: -29.33 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.60 Total: -34.02 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.03 Total: -3.17 kcal Atomic # 14 Polarization: 24.03 SS G_CDS: -5.09 Total: 18.95 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.48 -6.94 -36.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260210942.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.558 kcal (2) G-P(sol) polarization free energy of solvation -29.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds