Wall clock time and date at job start Mon Mar 30 2020 06:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46907 * 2 1 4 4 C 1.50702 * 109.47006 * 119.99565 * 2 1 3 5 5 H 1.08004 * 120.00131 * 5.69978 * 4 2 1 6 6 C 1.37878 * 119.99963 * 185.70463 * 4 2 1 7 7 N 1.31513 * 120.00328 * 349.14478 * 6 4 2 8 8 Si 1.86800 * 119.99805 * 168.87867 * 6 4 2 9 9 H 1.48499 * 109.47274 * 89.99576 * 8 6 4 10 10 H 1.48507 * 109.47032 * 209.99475 * 8 6 4 11 11 H 1.48505 * 109.47278 * 329.99140 * 8 6 4 12 12 C 1.50695 * 109.47605 * 239.99933 * 2 1 3 13 13 C 1.38843 * 119.67974 * 246.08731 * 12 2 1 14 14 C 1.36602 * 120.54288 * 179.75865 * 13 12 2 15 15 C 1.39702 * 119.80729 * 0.50569 * 14 13 12 16 16 C 1.46483 * 134.00425 * 179.74430 * 15 14 13 17 17 C 1.34246 * 107.00636 * 180.02562 * 16 15 14 18 18 N 1.36799 * 109.92471 * 359.97438 * 17 16 15 19 19 H 0.97001 * 125.07066 * 179.97438 * 18 17 16 20 20 C 1.37769 * 109.85394 * 0.02562 * 18 17 16 21 21 C 1.37939 * 119.68637 * 66.35346 * 12 2 1 22 22 F 1.35100 * 120.12360 * 359.96592 * 21 12 2 23 23 H 1.08998 * 109.47741 * 304.53938 * 1 2 3 24 24 H 1.09004 * 109.46807 * 64.54059 * 1 2 3 25 25 H 1.09001 * 109.47153 * 184.53147 * 1 2 3 26 26 H 1.08998 * 109.47212 * 185.66435 * 3 2 1 27 27 H 1.08996 * 109.47091 * 305.65890 * 3 2 1 28 28 H 1.08994 * 109.47568 * 65.66304 * 3 2 1 29 29 H 0.97008 * 119.99542 * 1.21053 * 7 6 4 30 30 H 1.07998 * 119.72541 * 0.02562 * 13 12 2 31 31 H 1.08003 * 120.09089 * 180.28063 * 14 13 12 32 32 H 1.07999 * 126.49997 * 359.96340 * 16 15 14 33 33 H 1.08006 * 125.04149 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 1.3348 -1.2004 1.8937 6 6 3.3823 -0.7345 1.5098 7 7 4.2481 -0.3298 0.6063 8 14 3.9811 -1.3350 3.1742 9 1 4.2197 -2.7995 3.1155 10 1 5.2463 -0.6410 3.5250 11 1 2.9534 -1.0418 4.2054 12 6 2.0324 -0.7104 -1.2304 13 6 2.7226 -1.9079 -1.0991 14 6 3.1816 -2.5692 -2.2028 15 6 2.9648 -2.0323 -3.4742 16 6 3.3127 -2.4586 -4.8317 17 6 2.8351 -1.5258 -5.6707 18 7 2.2094 -0.5373 -4.9615 19 1 1.7860 0.2444 -5.3495 20 6 2.2714 -0.8173 -3.6140 21 6 1.8070 -0.1619 -2.4758 22 9 1.1383 1.0063 -2.5913 23 1 -0.3634 0.5826 0.8465 24 1 -0.3633 0.4418 -0.9279 25 1 -0.3633 -1.0245 0.0812 26 1 3.1252 1.4443 -0.1014 27 1 1.5962 1.9847 -0.8349 28 1 1.7618 1.9263 0.9363 29 1 3.9359 0.0021 -0.2501 30 1 2.8942 -2.3222 -0.1166 31 1 3.7137 -3.5026 -2.0925 32 1 3.8521 -3.3532 -5.1057 33 1 2.9306 -1.5517 -6.7462 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260210942.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:08 Heat of formation + Delta-G solvation = -5.935135 kcal Electronic energy + Delta-G solvation = -18367.592393 eV Core-core repulsion = 15500.476191 eV Total energy + Delta-G solvation = -2867.116202 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.80284 -41.96808 -39.36930 -36.05333 -33.41316 -32.11472 -30.06882 -29.06095 -27.97664 -26.61040 -23.83348 -23.08562 -21.56050 -20.95451 -19.46900 -18.57367 -17.61751 -16.67696 -16.35617 -16.16680 -15.67343 -15.58940 -15.12812 -14.85622 -14.36773 -14.31931 -14.13854 -13.56905 -13.05313 -12.87555 -12.61541 -12.60855 -12.44557 -12.27553 -12.20837 -11.89265 -11.63461 -11.41959 -10.42926 -10.36489 -10.22190 -9.07157 -8.47845 -8.28550 -6.17013 0.18438 0.73194 1.58650 1.65836 1.83089 1.84710 2.21518 2.63039 2.96667 3.29308 3.46849 3.88971 4.11094 4.19748 4.43260 4.47918 4.53315 4.60652 4.75443 4.79475 4.88327 4.99882 5.03761 5.12716 5.19082 5.22879 5.51099 5.62110 5.64072 5.81409 5.86190 5.98369 6.27123 6.27576 6.42305 6.71179 6.80158 7.60251 8.93111 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.028294 B = 0.008930 C = 0.007460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.385106 B = 3134.843677 C = 3752.280885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.070 3.930 3 C -0.133 4.133 4 C -0.600 4.600 5 H 0.044 0.956 6 C -0.012 4.012 7 N -0.921 5.921 8 Si 1.103 2.897 9 H -0.275 1.275 10 H -0.289 1.289 11 H -0.277 1.277 12 C -0.070 4.070 13 C -0.091 4.091 14 C -0.107 4.107 15 C -0.114 4.114 16 C -0.226 4.226 17 C 0.069 3.931 18 N -0.588 5.588 19 H 0.425 0.575 20 C 0.038 3.962 21 C 0.045 3.955 22 F -0.150 7.150 23 H 0.051 0.949 24 H 0.041 0.959 25 H 0.040 0.960 26 H 0.036 0.964 27 H 0.043 0.957 28 H 0.038 0.962 29 H 0.272 0.728 30 H 0.123 0.877 31 H 0.134 0.866 32 H 0.170 0.830 33 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.827 -2.574 -11.403 12.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.070 3.930 3 C -0.191 4.191 4 C -0.638 4.638 5 H 0.063 0.937 6 C -0.213 4.213 7 N -0.559 5.559 8 Si 0.927 3.073 9 H -0.201 1.201 10 H -0.215 1.215 11 H -0.203 1.203 12 C -0.072 4.072 13 C -0.110 4.110 14 C -0.126 4.126 15 C -0.119 4.119 16 C -0.250 4.250 17 C -0.057 4.057 18 N -0.192 5.192 19 H 0.264 0.736 20 C -0.070 4.070 21 C 0.023 3.977 22 F -0.129 7.129 23 H 0.070 0.930 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.086 0.914 30 H 0.141 0.859 31 H 0.152 0.848 32 H 0.187 0.813 33 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -1.547 -2.692 -10.607 11.052 hybrid contribution -1.588 1.067 -0.682 2.032 sum -3.136 -1.625 -11.290 11.829 Atomic orbital electron populations 1.21627 0.95377 1.00163 0.99934 1.17433 0.92965 0.91910 0.90700 1.21928 1.00469 0.97374 0.99303 1.21989 0.94839 1.38122 1.08842 0.93743 1.26752 0.93597 0.95522 1.05444 1.70855 1.37698 1.39978 1.07329 0.83108 0.75347 0.76667 0.72202 1.20074 1.21474 1.20267 1.20459 0.97750 0.96021 0.92969 1.20789 0.96775 0.94380 0.99080 1.20539 1.00914 1.00657 0.90501 1.19451 1.02402 0.94872 0.95133 1.21979 1.10580 1.03784 0.88666 1.22553 0.96220 0.87735 0.99204 1.41747 1.51023 1.23665 1.02753 0.73622 1.18191 1.05447 0.98421 0.84944 1.16727 1.03751 0.85035 0.92205 1.91306 1.78915 1.46043 1.96654 0.93003 0.93976 0.94045 0.94486 0.93776 0.94284 0.91419 0.85905 0.84767 0.81285 0.76163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.06 8.31 71.98 0.60 -4.46 16 2 C 0.07 3.53 0.49 -53.68 -0.03 3.51 16 3 C -0.13 -6.64 7.68 71.98 0.55 -6.09 16 4 C -0.60 -32.54 6.74 25.60 0.17 -32.37 16 5 H 0.04 2.42 7.77 -2.91 -0.02 2.40 16 6 C -0.01 -0.63 3.82 84.65 0.32 -0.31 16 7 N -0.92 -53.50 11.90 21.45 0.26 -53.25 16 8 Si 1.10 49.26 29.92 68.60 2.05 51.31 16 9 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 10 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 11 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 12 C -0.07 -3.39 3.41 -19.79 -0.07 -3.46 16 13 C -0.09 -4.41 7.41 22.03 0.16 -4.24 16 14 C -0.11 -4.47 10.05 22.24 0.22 -4.25 16 15 C -0.11 -4.30 6.37 -20.20 -0.13 -4.43 16 16 C -0.23 -6.19 11.08 23.51 0.26 -5.93 16 17 C 0.07 1.51 11.81 83.01 0.98 2.49 16 18 N -0.59 -16.22 6.07 -187.49 -1.14 -17.36 16 19 H 0.43 9.25 8.96 -92.71 -0.83 8.42 16 20 C 0.04 1.45 7.26 39.04 0.28 1.73 16 21 C 0.04 1.98 6.77 22.46 0.15 2.13 16 22 F -0.15 -6.39 13.41 44.97 0.60 -5.79 16 23 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 24 H 0.04 1.75 6.70 -2.39 -0.02 1.73 16 25 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.04 2.00 5.49 -2.39 -0.01 1.99 16 27 H 0.04 2.03 6.02 -2.39 -0.01 2.01 16 28 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.27 16.06 3.95 -92.70 -0.37 15.69 16 30 H 0.12 6.49 5.56 -2.91 -0.02 6.48 16 31 H 0.13 4.86 8.06 -2.91 -0.02 4.84 16 32 H 0.17 3.61 8.06 -2.91 -0.02 3.59 16 33 H 0.22 2.27 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -65.77 266.89 5.97 -59.80 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 0.71 Total: 20.96 kcal Atomic # 6 Polarization: -59.17 SS G_CDS: 3.49 Total: -55.68 kcal Atomic # 7 Polarization: -69.72 SS G_CDS: -0.88 Total: -70.60 kcal Atomic # 9 Polarization: -6.39 SS G_CDS: 0.60 Total: -5.79 kcal Atomic # 14 Polarization: 49.26 SS G_CDS: 2.05 Total: 51.31 kcal Total: -65.77 5.97 -59.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260210942.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.864 kcal (2) G-P(sol) polarization free energy of solvation -65.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds