Wall clock time and date at job start Mon Mar 30 2020 05:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35950 * 117.00036 * 2 1 4 4 C 1.38305 * 120.06869 * 359.73046 * 3 2 1 5 5 C 1.38699 * 120.62279 * 179.75462 * 4 3 2 6 6 C 1.50702 * 119.83867 * 180.26174 * 5 4 3 7 7 H 1.08998 * 109.46853 * 160.23363 * 6 5 4 8 8 N 1.46901 * 109.47032 * 40.23684 * 6 5 4 9 9 C 1.50698 * 109.46961 * 280.23336 * 6 5 4 10 10 H 1.07999 * 120.00174 * 0.02562 * 9 6 5 11 11 C 1.37871 * 119.99735 * 179.97438 * 9 6 5 12 12 N 1.31513 * 120.00416 * 0.02562 * 11 9 6 13 13 Si 1.86801 * 120.00034 * 180.02562 * 11 9 6 14 14 H 1.48506 * 109.47030 * 90.00692 * 13 11 9 15 15 H 1.48498 * 109.47589 * 210.00502 * 13 11 9 16 16 H 1.48500 * 109.47357 * 330.00891 * 13 11 9 17 17 C 1.37741 * 120.32267 * 0.49877 * 5 4 3 18 18 C 1.39511 * 119.69991 * 359.76317 * 17 5 4 19 19 C 1.46784 * 134.29478 * 179.97438 * 18 17 5 20 20 C 1.34019 * 106.19012 * 180.02562 * 19 18 17 21 21 O 1.34422 * 110.12468 * 0.02562 * 20 19 18 22 22 C 1.34882 * 110.88115 * 359.97438 * 21 20 19 23 23 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46938 * 59.99683 * 1 2 3 25 25 H 1.09004 * 109.46926 * 299.99805 * 1 2 3 26 26 H 1.07995 * 119.69033 * 359.97438 * 4 3 2 27 27 H 1.00897 * 110.99847 * 300.00089 * 8 6 5 28 28 H 1.00902 * 111.00049 * 63.95542 * 8 6 5 29 29 H 0.97004 * 120.00601 * 179.97438 * 12 11 9 30 30 H 1.07998 * 120.14995 * 179.78849 * 17 5 4 31 31 H 1.07998 * 126.90502 * 0.04187 * 19 18 17 32 32 H 1.07988 * 124.93626 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2944 2.3721 -0.0056 5 6 1.9121 3.6140 -0.0006 6 6 1.0755 4.8675 -0.0009 7 1 1.6770 5.7057 0.3508 8 7 -0.0790 4.6860 0.8891 9 6 0.5919 5.1483 -1.4003 10 1 0.8628 4.4852 -2.2085 11 6 -0.1972 6.2513 -1.6485 12 7 -0.5275 7.0585 -0.6643 13 14 -0.7973 6.5990 -3.3830 14 1 -2.1031 5.9256 -3.5994 15 1 -0.9594 8.0637 -3.5665 16 1 0.1934 6.0842 -4.3622 17 6 3.2863 3.7071 -0.0002 18 6 4.0579 2.5448 0.0001 19 6 5.5001 2.2719 0.0000 20 6 5.6280 0.9378 -0.0002 21 8 4.4157 0.3570 -0.0008 22 6 3.4376 1.2858 -0.0005 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 0.2162 2.3111 -0.0104 27 1 -0.6527 3.9141 0.5841 28 1 0.2177 4.5603 1.8453 29 1 -1.0825 7.8348 -0.8390 30 1 3.7643 4.6756 0.0003 31 1 6.2979 2.9998 0.0003 32 1 6.5682 0.4066 -0.0007 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260223232.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:02 Heat of formation + Delta-G solvation = -2.502608 kcal Electronic energy + Delta-G solvation = -17602.273460 eV Core-core repulsion = 14722.933313 eV Total energy + Delta-G solvation = -2879.340146 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.05143 -39.19157 -37.07769 -34.07641 -32.05433 -31.40216 -29.25400 -28.59133 -27.14452 -25.87375 -23.07932 -22.16069 -20.94084 -20.21298 -17.62563 -16.97681 -16.67820 -16.09954 -15.96368 -15.09949 -14.88240 -14.66718 -14.20523 -13.80801 -13.08926 -13.05056 -12.54417 -12.39521 -12.05236 -11.85890 -11.36017 -11.20898 -10.92205 -10.88694 -10.70034 -10.59373 -9.88263 -9.49064 -9.16905 -8.46193 -8.00239 -7.36011 -7.12808 -5.90775 -4.06115 1.34441 1.90192 2.67419 3.07372 3.31760 3.38922 3.42589 3.47998 4.19983 4.48472 4.76935 5.13015 5.19266 5.33183 5.34875 5.49400 5.54133 5.63105 5.68973 5.78066 5.89788 6.12033 6.26455 6.53920 6.60348 6.80999 7.02247 7.13841 7.20016 7.52579 7.75860 7.87803 8.14478 8.57835 8.94959 9.10470 9.62762 11.13374 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.024623 B = 0.006869 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.852361 B = 4075.407372 C = 4543.372059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.133 3.867 4 C -0.178 4.178 5 C -0.049 4.049 6 C 0.256 3.744 7 H 0.051 0.949 8 N -0.808 5.808 9 C -0.532 4.532 10 H 0.054 0.946 11 C 0.085 3.915 12 N -0.846 5.846 13 Si 0.884 3.116 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.275 1.275 17 C -0.115 4.115 18 C -0.094 4.094 19 C -0.215 4.215 20 C 0.000 4.000 21 O -0.194 6.194 22 C 0.003 3.997 23 H 0.096 0.904 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.137 0.863 27 H 0.315 0.685 28 H 0.299 0.701 29 H 0.256 0.744 30 H 0.126 0.874 31 H 0.155 0.845 32 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.766 -11.101 2.591 13.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.235 6.235 3 C 0.088 3.912 4 C -0.197 4.197 5 C -0.051 4.051 6 C 0.146 3.854 7 H 0.068 0.932 8 N -0.334 5.334 9 C -0.570 4.570 10 H 0.072 0.928 11 C -0.122 4.122 12 N -0.481 5.481 13 Si 0.712 3.288 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.200 1.200 17 C -0.134 4.134 18 C -0.095 4.095 19 C -0.234 4.234 20 C -0.066 4.066 21 O -0.096 6.096 22 C -0.043 4.043 23 H 0.114 0.886 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.155 0.845 27 H 0.128 0.872 28 H 0.110 0.890 29 H 0.066 0.934 30 H 0.144 0.856 31 H 0.173 0.827 32 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 6.438 -10.637 2.426 12.668 hybrid contribution -0.010 -0.483 -0.856 0.982 sum 6.428 -11.119 1.570 12.939 Atomic orbital electron populations 1.23041 0.78381 1.03448 1.01884 1.86058 1.21361 1.26713 1.89407 1.17686 0.86559 0.85248 1.01736 1.20860 0.99925 0.90564 1.08347 1.21505 0.94208 0.97652 0.91774 1.18222 0.86483 0.86926 0.93751 0.93163 1.59220 1.22547 1.48749 1.02834 1.20818 1.34033 1.10508 0.91686 0.92777 1.24935 0.95443 0.95723 0.96130 1.70100 1.34438 1.13216 1.30326 0.86753 0.79227 0.77383 0.85481 1.20707 1.21217 1.19982 1.20388 0.92868 0.96314 1.03850 1.19777 0.92728 0.93046 1.03915 1.22474 0.94763 0.95855 1.10356 1.23842 0.87179 0.93090 1.02476 1.83982 1.13462 1.35386 1.76749 1.18558 0.87317 0.87098 1.11337 0.88589 0.92261 0.92579 0.84521 0.87214 0.89047 0.93380 0.85631 0.82748 0.78084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.32 -5.50 10.50 -19.58 -0.21 -5.71 16 3 C 0.13 2.51 6.70 -39.15 -0.26 2.25 16 4 C -0.18 -3.44 8.27 -39.39 -0.33 -3.77 16 5 C -0.05 -1.03 4.88 -104.63 -0.51 -1.54 16 6 C 0.26 6.18 2.84 -70.02 -0.20 5.98 16 7 H 0.05 1.33 7.99 -51.93 -0.42 0.91 16 8 N -0.81 -18.33 8.36 -6.65 -0.06 -18.38 16 9 C -0.53 -14.34 8.70 -34.44 -0.30 -14.64 16 10 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 11 C 0.08 2.32 5.39 -17.82 -0.10 2.22 16 12 N -0.85 -24.18 12.77 55.43 0.71 -23.48 16 13 Si 0.88 21.09 29.54 -169.99 -5.02 16.07 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 15 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 17 C -0.12 -2.29 9.71 -39.29 -0.38 -2.67 16 18 C -0.09 -1.73 6.39 -105.17 -0.67 -2.41 16 19 C -0.22 -3.14 11.14 -37.61 -0.42 -3.56 16 20 C 0.00 -0.01 11.96 29.25 0.35 0.34 16 21 O -0.19 -3.33 10.58 3.78 0.04 -3.29 16 22 C 0.00 0.07 7.35 -38.38 -0.28 -0.22 16 23 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.06 0.75 7.64 -51.93 -0.40 0.36 16 25 H 0.06 0.66 7.67 -51.93 -0.40 0.27 16 26 H 0.14 2.47 4.84 -52.49 -0.25 2.21 16 27 H 0.32 6.73 7.32 -39.29 -0.29 6.44 16 28 H 0.30 6.09 9.06 -39.29 -0.36 5.73 16 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.13 2.37 8.03 -52.49 -0.42 1.95 16 31 H 0.15 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.20 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 279.09 15.07 4.21 4.21 Total: -1.00 -31.57 279.09 -5.77 -37.34 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -3.34 Total: 9.90 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -2.11 Total: -16.66 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: 0.65 Total: -41.86 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.17 Total: -9.00 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.57 -5.77 -37.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260223232.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.842 kcal (2) G-P(sol) polarization free energy of solvation -31.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds