Wall clock time and date at job start Mon Mar 30 2020 06:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 11 11 N 1.46900 * 109.47041 * 59.99927 * 9 7 2 12 12 C 1.50696 * 109.47259 * 180.02562 * 9 7 2 13 13 C 1.38233 * 119.99846 * 279.72347 * 12 9 7 14 14 C 1.38243 * 119.99896 * 179.81059 * 13 12 9 15 15 C 1.38225 * 119.99865 * 0.39854 * 14 13 12 16 16 C 1.50699 * 120.00020 * 179.83461 * 15 14 13 17 17 H 1.09000 * 110.27505 * 160.66088 * 16 15 14 18 18 C 1.54955 * 110.31019 * 282.85568 * 16 15 14 19 19 C 1.55302 * 100.94067 * 155.35975 * 18 16 15 20 20 C 1.54381 * 102.25251 * 325.86610 * 19 18 16 21 21 O 1.43234 * 107.59124 * 21.36257 * 20 19 18 22 22 C 1.38235 * 120.00213 * 359.85785 * 15 14 13 23 23 C 1.38231 * 120.00059 * 99.99836 * 12 9 7 24 24 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 25 25 H 1.00900 * 111.00100 * 59.99591 * 11 9 7 26 26 H 1.00898 * 111.00378 * 183.95803 * 11 9 7 27 27 H 1.08001 * 120.00337 * 0.02562 * 13 12 9 28 28 H 1.08003 * 119.99793 * 180.23174 * 14 13 12 29 29 H 1.08996 * 111.12404 * 273.28005 * 18 16 15 30 30 H 1.09000 * 111.12197 * 37.43836 * 18 16 15 31 31 H 1.08997 * 110.84510 * 207.67831 * 19 18 16 32 32 H 1.08993 * 111.02516 * 84.13843 * 19 18 16 33 33 H 1.09002 * 109.83208 * 261.84129 * 20 19 18 34 34 H 1.09002 * 109.90555 * 140.91588 * 20 19 18 35 35 H 1.07996 * 120.00303 * 179.97438 * 22 15 14 36 36 H 1.07999 * 120.00354 * 359.97438 * 23 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6241 -2.5566 0.8903 11 7 0.4070 -2.5773 -1.1992 12 6 2.2304 -3.6445 0.0018 13 6 2.8341 -4.0390 -1.1775 14 6 3.7355 -5.0872 -1.1757 15 6 4.0268 -5.7461 0.0040 16 6 5.0065 -6.8912 0.0053 17 1 5.3780 -7.0692 1.0145 18 6 4.3387 -8.1711 -0.5577 19 6 5.5812 -8.9539 -1.0631 20 6 6.5107 -7.8186 -1.5431 21 8 6.0982 -6.6144 -0.8863 22 6 3.4190 -5.3551 1.1824 23 6 2.5207 -4.3044 1.1813 24 1 -0.4850 -0.8401 -0.0004 25 1 0.9653 -2.5259 -2.0381 26 1 -0.1570 -3.4139 -1.1908 27 1 2.6043 -3.5261 -2.0997 28 1 4.2100 -5.3929 -2.0965 29 1 3.8202 -8.7214 0.2273 30 1 3.6635 -7.9328 -1.3795 31 1 5.3148 -9.6127 -1.8895 32 1 6.0440 -9.5179 -0.2533 33 1 6.4222 -7.6998 -2.6230 34 1 7.5433 -8.0481 -1.2800 35 1 3.6463 -5.8702 2.1040 36 1 2.0460 -3.9989 2.1020 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260226383.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:51 Heat of formation + Delta-G solvation = -30.918541 kcal Electronic energy + Delta-G solvation = -17557.531384 eV Core-core repulsion = 14812.792125 eV Total energy + Delta-G solvation = -2744.739259 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.90996 -38.38914 -34.94663 -32.29668 -31.79960 -30.64786 -30.22296 -27.77986 -25.44293 -23.27293 -22.37971 -21.79878 -21.21186 -19.85711 -16.95147 -16.86051 -16.42236 -15.42897 -15.05838 -14.62783 -14.21757 -14.06385 -13.63777 -13.33789 -13.28141 -12.80979 -12.63069 -12.40396 -11.90089 -11.85778 -11.53521 -11.19459 -11.06505 -10.84208 -10.68616 -10.44895 -10.14396 -10.01618 -9.62267 -8.84802 -8.39096 -8.30438 -7.82182 -7.45053 -6.15653 -3.98623 1.85800 1.95215 3.49821 3.53623 3.69510 3.76599 4.32138 4.35943 4.62685 4.65998 4.71559 5.02872 5.06396 5.28811 5.38542 5.46725 5.49883 5.52354 5.55462 5.66423 5.71323 5.81655 5.92260 6.05286 6.12376 6.21000 6.50537 6.57664 6.86561 6.94599 7.01145 7.12581 7.44535 7.56310 8.00913 8.32138 8.68179 8.78246 9.08093 9.84824 11.24107 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.039917 B = 0.004873 C = 0.004689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.291567 B = 5744.640250 C = 5970.165699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.038 3.962 3 Si 1.067 2.933 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.607 4.607 8 H 0.046 0.954 9 C 0.235 3.765 10 H 0.037 0.963 11 N -0.829 5.829 12 C -0.060 4.060 13 C -0.124 4.124 14 C -0.095 4.095 15 C -0.120 4.120 16 C 0.129 3.871 17 H 0.074 0.926 18 C -0.146 4.146 19 C -0.157 4.157 20 C 0.049 3.951 21 O -0.373 6.373 22 C -0.110 4.110 23 C -0.124 4.124 24 H 0.290 0.710 25 H 0.326 0.674 26 H 0.301 0.699 27 H 0.116 0.884 28 H 0.113 0.887 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.112 0.888 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.787 -17.239 -1.318 19.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.172 4.172 3 Si 0.896 3.104 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.646 4.646 8 H 0.065 0.935 9 C 0.126 3.874 10 H 0.055 0.945 11 N -0.357 5.357 12 C -0.063 4.063 13 C -0.142 4.142 14 C -0.113 4.113 15 C -0.120 4.120 16 C 0.072 3.928 17 H 0.092 0.908 18 C -0.183 4.183 19 C -0.194 4.194 20 C -0.028 4.028 21 O -0.293 6.293 22 C -0.129 4.129 23 C -0.143 4.143 24 H 0.102 0.898 25 H 0.139 0.861 26 H 0.112 0.888 27 H 0.134 0.866 28 H 0.131 0.869 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.130 0.870 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.314 -14.711 -1.092 16.933 hybrid contribution 0.853 -2.789 -0.184 2.922 sum 9.167 -17.500 -1.275 19.797 Atomic orbital electron populations 1.70528 1.06825 1.32772 1.42491 1.25630 0.96600 1.01822 0.93117 0.83607 0.74731 0.75510 0.76586 1.21645 1.21690 1.21117 1.21704 0.93452 0.90372 1.59032 0.93519 1.18389 0.88145 0.90722 0.90145 0.94489 1.59461 1.28617 1.42238 1.05355 1.21527 0.96966 0.95462 0.92300 1.20956 0.97663 0.97064 0.98550 1.20790 0.97221 0.95998 0.97270 1.19451 0.99538 0.98831 0.94220 1.21691 0.85364 0.92256 0.93476 0.90838 1.23313 0.97745 0.95545 1.01736 1.23129 0.96208 0.98321 1.01769 1.23101 0.97934 0.84433 0.97323 1.88505 1.50961 1.30818 1.58995 1.20800 0.97894 0.97669 0.96503 1.21020 0.99084 0.95894 0.98300 0.89781 0.86076 0.88819 0.86570 0.86861 0.89866 0.90048 0.90117 0.90607 0.91486 0.91602 0.86986 0.86439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.08 13.51 55.43 0.75 -26.33 16 2 C 0.04 1.09 5.39 -17.82 -0.10 1.00 16 3 Si 1.07 25.72 29.90 -169.99 -5.08 20.64 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.61 -17.13 8.71 -34.44 -0.30 -17.43 16 8 H 0.05 1.36 7.74 -52.48 -0.41 0.95 16 9 C 0.23 5.83 2.47 -70.02 -0.17 5.66 16 10 H 0.04 0.99 7.87 -51.93 -0.41 0.58 16 11 N -0.83 -19.10 7.62 -6.65 -0.05 -19.15 16 12 C -0.06 -1.29 4.88 -104.63 -0.51 -1.81 16 13 C -0.12 -2.45 9.29 -39.58 -0.37 -2.81 16 14 C -0.09 -1.66 9.27 -39.58 -0.37 -2.03 16 15 C -0.12 -1.96 5.03 -104.63 -0.53 -2.48 16 16 C 0.13 1.72 3.64 -26.85 -0.10 1.62 16 17 H 0.07 0.91 8.04 -51.93 -0.42 0.49 16 18 C -0.15 -1.52 6.55 -24.48 -0.16 -1.68 16 19 C -0.16 -1.31 7.02 -24.79 -0.17 -1.49 16 20 C 0.05 0.50 7.79 37.88 0.30 0.79 16 21 O -0.37 -5.38 10.37 -35.23 -0.37 -5.74 16 22 C -0.11 -1.84 9.68 -39.58 -0.38 -2.22 16 23 C -0.12 -2.41 9.67 -39.58 -0.38 -2.79 16 24 H 0.29 8.77 6.39 -40.82 -0.26 8.51 16 25 H 0.33 7.26 7.34 -39.29 -0.29 6.97 16 26 H 0.30 6.12 9.06 -39.29 -0.36 5.76 16 27 H 0.12 2.26 6.66 -52.49 -0.35 1.91 16 28 H 0.11 1.82 7.77 -52.48 -0.41 1.41 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.91 7.96 -51.93 -0.41 0.49 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.11 1.54 8.05 -52.49 -0.42 1.12 16 36 H 0.12 2.19 8.04 -52.49 -0.42 1.77 16 LS Contribution 297.73 15.07 4.49 4.49 Total: -1.00 -31.47 297.73 -8.57 -40.04 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -5.06 Total: 11.73 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: -3.24 Total: -25.68 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.70 Total: -45.48 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -0.37 Total: -5.74 kcal Atomic # 14 Polarization: 25.72 SS G_CDS: -5.08 Total: 20.64 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.47 -8.57 -40.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260226383.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.123 kcal (2) G-P(sol) polarization free energy of solvation -31.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds