Wall clock time and date at job start Mon Mar 30 2020 06:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 11 11 N 1.46900 * 109.47041 * 59.99927 * 9 7 2 12 12 C 1.50696 * 109.47259 * 180.02562 * 9 7 2 13 13 C 1.38233 * 119.99846 * 279.72347 * 12 9 7 14 14 C 1.38243 * 119.99896 * 179.81059 * 13 12 9 15 15 C 1.38225 * 119.99865 * 0.39854 * 14 13 12 16 16 C 1.50699 * 120.00020 * 179.83461 * 15 14 13 17 17 H 1.09000 * 110.27505 * 160.66088 * 16 15 14 18 18 C 1.54955 * 110.31019 * 282.85568 * 16 15 14 19 19 C 1.55302 * 100.94067 * 155.35975 * 18 16 15 20 20 C 1.54381 * 102.25251 * 325.86610 * 19 18 16 21 21 O 1.43234 * 107.59124 * 21.36257 * 20 19 18 22 22 C 1.38235 * 120.00213 * 359.85785 * 15 14 13 23 23 C 1.38231 * 120.00059 * 99.99836 * 12 9 7 24 24 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 25 25 H 1.00900 * 111.00100 * 59.99591 * 11 9 7 26 26 H 1.00898 * 111.00378 * 183.95803 * 11 9 7 27 27 H 1.08001 * 120.00337 * 0.02562 * 13 12 9 28 28 H 1.08003 * 119.99793 * 180.23174 * 14 13 12 29 29 H 1.08996 * 111.12404 * 273.28005 * 18 16 15 30 30 H 1.09000 * 111.12197 * 37.43836 * 18 16 15 31 31 H 1.08997 * 110.84510 * 207.67831 * 19 18 16 32 32 H 1.08993 * 111.02516 * 84.13843 * 19 18 16 33 33 H 1.09002 * 109.83208 * 261.84129 * 20 19 18 34 34 H 1.09002 * 109.90555 * 140.91588 * 20 19 18 35 35 H 1.07996 * 120.00303 * 179.97438 * 22 15 14 36 36 H 1.07999 * 120.00354 * 359.97438 * 23 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6241 -2.5566 0.8903 11 7 0.4070 -2.5773 -1.1992 12 6 2.2304 -3.6445 0.0018 13 6 2.8341 -4.0390 -1.1775 14 6 3.7355 -5.0872 -1.1757 15 6 4.0268 -5.7461 0.0040 16 6 5.0065 -6.8912 0.0053 17 1 5.3780 -7.0692 1.0145 18 6 4.3387 -8.1711 -0.5577 19 6 5.5812 -8.9539 -1.0631 20 6 6.5107 -7.8186 -1.5431 21 8 6.0982 -6.6144 -0.8863 22 6 3.4190 -5.3551 1.1824 23 6 2.5207 -4.3044 1.1813 24 1 -0.4850 -0.8401 -0.0004 25 1 0.9653 -2.5259 -2.0381 26 1 -0.1570 -3.4139 -1.1908 27 1 2.6043 -3.5261 -2.0997 28 1 4.2100 -5.3929 -2.0965 29 1 3.8202 -8.7214 0.2273 30 1 3.6635 -7.9328 -1.3795 31 1 5.3148 -9.6127 -1.8895 32 1 6.0440 -9.5179 -0.2533 33 1 6.4222 -7.6998 -2.6230 34 1 7.5433 -8.0481 -1.2800 35 1 3.6463 -5.8702 2.1040 36 1 2.0460 -3.9989 2.1020 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260226383.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:50 Heat of formation + Delta-G solvation = -51.297947 kcal Electronic energy + Delta-G solvation = -17558.415102 eV Core-core repulsion = 14812.792125 eV Total energy + Delta-G solvation = -2745.622976 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.03760 -39.68931 -36.75599 -33.77516 -33.04096 -32.12135 -31.70070 -29.07301 -27.33917 -24.79227 -23.82275 -22.70052 -22.51544 -21.34484 -18.91218 -18.03776 -17.49561 -16.78706 -16.45196 -16.10285 -15.67168 -15.53836 -15.33999 -14.73286 -14.34877 -14.19207 -14.00121 -13.85296 -13.73708 -12.90137 -12.67914 -12.58421 -12.39656 -12.24357 -11.98463 -11.92993 -11.78834 -11.67635 -10.87973 -10.54976 -10.48263 -9.83759 -9.51989 -9.20448 -8.40496 -6.26870 0.42011 0.49480 1.54038 1.62564 1.80431 2.59087 2.71542 3.08972 3.29638 3.52394 3.74799 3.92895 3.99576 4.11241 4.17268 4.19900 4.24137 4.28316 4.40405 4.62932 4.64928 4.81416 4.86771 4.92219 4.96062 5.00960 5.09408 5.20018 5.24792 5.51342 5.60440 5.81481 5.90537 6.08187 6.13138 6.20852 6.65254 6.75318 7.02115 7.64079 8.95670 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.039917 B = 0.004873 C = 0.004689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.291567 B = 5744.640250 C = 5970.165699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.010 4.010 3 Si 1.112 2.888 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.283 1.283 7 C -0.616 4.616 8 H 0.031 0.969 9 C 0.240 3.760 10 H 0.008 0.992 11 N -0.835 5.835 12 C -0.090 4.090 13 C -0.133 4.133 14 C -0.097 4.097 15 C -0.111 4.111 16 C 0.125 3.875 17 H 0.089 0.911 18 C -0.143 4.143 19 C -0.145 4.145 20 C 0.039 3.961 21 O -0.404 6.404 22 C -0.104 4.104 23 C -0.138 4.138 24 H 0.279 0.721 25 H 0.330 0.670 26 H 0.318 0.682 27 H 0.110 0.890 28 H 0.127 0.873 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.148 0.852 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.581 -19.254 -1.217 22.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.213 4.213 3 Si 0.935 3.065 4 H -0.201 1.201 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.655 4.655 8 H 0.049 0.951 9 C 0.130 3.870 10 H 0.026 0.974 11 N -0.363 5.363 12 C -0.093 4.093 13 C -0.151 4.151 14 C -0.115 4.115 15 C -0.111 4.111 16 C 0.068 3.932 17 H 0.107 0.893 18 C -0.181 4.181 19 C -0.183 4.183 20 C -0.037 4.037 21 O -0.324 6.324 22 C -0.122 4.122 23 C -0.156 4.156 24 H 0.090 0.910 25 H 0.143 0.857 26 H 0.129 0.871 27 H 0.128 0.872 28 H 0.145 0.855 29 H 0.119 0.881 30 H 0.089 0.911 31 H 0.117 0.883 32 H 0.111 0.889 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.165 0.835 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.113 -16.755 -0.992 19.595 hybrid contribution 0.363 -2.300 -0.230 2.340 sum 10.476 -19.055 -1.222 21.779 Atomic orbital electron populations 1.70643 1.07635 1.32146 1.44900 1.26969 0.96717 1.05363 0.92285 0.83005 0.73986 0.72053 0.77435 1.20124 1.20551 1.20841 1.21979 0.92906 0.92303 1.58293 0.95057 1.18055 0.88388 0.91077 0.89467 0.97396 1.59222 1.28777 1.43426 1.04922 1.21216 0.98110 0.95885 0.94042 1.20944 0.98464 0.98039 0.97702 1.20951 0.96546 0.95341 0.98618 1.19909 0.98993 0.98832 0.93373 1.21819 0.84960 0.91903 0.94536 0.89310 1.23300 0.98396 0.94493 1.01872 1.23120 0.94557 0.97708 1.02887 1.23348 0.99113 0.83870 0.97391 1.88466 1.51177 1.33280 1.59502 1.21110 0.96392 0.96500 0.98193 1.21137 1.00049 0.96950 0.97512 0.90988 0.85674 0.87102 0.87159 0.85490 0.88119 0.91065 0.88316 0.88907 0.91124 0.90247 0.83463 0.86609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.98 13.51 21.45 0.29 -56.69 16 2 C -0.01 -0.57 5.39 84.65 0.46 -0.11 16 3 Si 1.11 52.22 29.90 68.60 2.05 54.27 16 4 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 7 C -0.62 -35.76 8.71 25.60 0.22 -35.53 16 8 H 0.03 1.86 7.74 -2.91 -0.02 1.84 16 9 C 0.24 12.33 2.47 43.42 0.11 12.44 16 10 H 0.01 0.46 7.87 -2.39 -0.02 0.44 16 11 N -0.83 -39.70 7.62 -174.95 -1.33 -41.03 16 12 C -0.09 -3.97 4.88 -19.87 -0.10 -4.06 16 13 C -0.13 -5.30 9.29 22.27 0.21 -5.09 16 14 C -0.10 -3.29 9.27 22.27 0.21 -3.08 16 15 C -0.11 -3.38 5.03 -19.87 -0.10 -3.48 16 16 C 0.12 2.94 3.64 30.52 0.11 3.05 16 17 H 0.09 1.84 8.04 -2.39 -0.02 1.82 16 18 C -0.14 -2.47 6.55 32.05 0.21 -2.26 16 19 C -0.15 -1.85 7.02 31.85 0.22 -1.63 16 20 C 0.04 0.67 7.79 72.45 0.56 1.24 16 21 O -0.40 -10.62 10.37 -148.98 -1.54 -12.16 16 22 C -0.10 -3.27 9.68 22.27 0.22 -3.05 16 23 C -0.14 -5.35 9.67 22.27 0.22 -5.13 16 24 H 0.28 17.44 6.39 -92.71 -0.59 16.85 16 25 H 0.33 15.13 7.34 -89.69 -0.66 14.47 16 26 H 0.32 13.27 9.06 -89.70 -0.81 12.45 16 27 H 0.11 4.39 6.66 -2.91 -0.02 4.37 16 28 H 0.13 3.92 7.77 -2.91 -0.02 3.90 16 29 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.07 1.39 7.96 -2.39 -0.02 1.37 16 31 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.14 16 35 H 0.15 3.54 8.05 -2.91 -0.02 3.51 16 36 H 0.12 4.40 8.04 -2.91 -0.02 4.38 16 Total: -1.00 -68.97 297.73 1.80 -67.17 By element: Atomic # 1 Polarization: 35.36 SS G_CDS: -0.21 Total: 35.15 kcal Atomic # 6 Polarization: -49.25 SS G_CDS: 2.54 Total: -46.71 kcal Atomic # 7 Polarization: -96.67 SS G_CDS: -1.04 Total: -97.72 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: -1.54 Total: -12.16 kcal Atomic # 14 Polarization: 52.22 SS G_CDS: 2.05 Total: 54.27 kcal Total: -68.97 1.80 -67.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260226383.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.869 kcal (2) G-P(sol) polarization free energy of solvation -68.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds