Wall clock time and date at job start Mon Mar 30 2020 06:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86800 * 119.99951 * 2 1 4 4 H 1.48495 * 109.47416 * 270.00035 * 3 2 1 5 5 H 1.48507 * 109.47110 * 29.99972 * 3 2 1 6 6 H 1.48498 * 109.47318 * 150.00047 * 3 2 1 7 7 C 1.37875 * 120.00550 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00411 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99710 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47240 * 60.00487 * 9 7 2 11 11 N 1.46898 * 109.47597 * 300.00378 * 9 7 2 12 12 C 1.50695 * 109.47325 * 180.02562 * 9 7 2 13 13 C 1.38236 * 120.00405 * 260.00252 * 12 9 7 14 14 C 1.38228 * 120.00493 * 179.97438 * 13 12 9 15 15 C 1.38232 * 119.99802 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99990 * 179.97438 * 15 14 13 17 17 H 1.09003 * 110.55428 * 27.88186 * 16 15 14 18 18 C 1.54994 * 110.62228 * 265.00043 * 16 15 14 19 19 C 1.54807 * 102.09860 * 204.47433 * 18 16 15 20 20 C 1.54105 * 104.18504 * 20.88235 * 19 18 16 21 21 O 1.43746 * 107.42259 * 1.95340 * 20 19 18 22 22 C 1.38229 * 120.00311 * 0.25532 * 15 14 13 23 23 C 1.38234 * 120.00150 * 79.98210 * 12 9 7 24 24 H 0.97005 * 120.00562 * 0.02562 * 1 2 3 25 25 H 1.00898 * 110.99811 * 300.00457 * 11 9 7 26 26 H 1.00902 * 110.99958 * 63.95161 * 11 9 7 27 27 H 1.08001 * 119.99652 * 359.97268 * 13 12 9 28 28 H 1.07999 * 120.00527 * 180.02562 * 14 13 12 29 29 H 1.09007 * 110.90973 * 86.27291 * 18 16 15 30 30 H 1.09003 * 110.93565 * 322.69212 * 18 16 15 31 31 H 1.08996 * 110.48875 * 262.20504 * 19 18 16 32 32 H 1.09003 * 110.60294 * 139.60995 * 19 18 16 33 33 H 1.09002 * 109.88076 * 121.45430 * 20 19 18 34 34 H 1.08996 * 109.87584 * 242.45546 * 20 19 18 35 35 H 1.08001 * 120.00789 * 179.72493 * 22 15 14 36 36 H 1.08006 * 119.99987 * 359.97438 * 23 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6242 -2.5567 -0.8903 11 7 0.4069 -2.5773 1.1991 12 6 2.2304 -3.6445 -0.0005 13 6 2.5216 -4.3049 -1.1795 14 6 3.4203 -5.3552 -1.1796 15 6 4.0274 -5.7455 -0.0006 16 6 5.0067 -6.8909 -0.0006 17 1 5.4936 -6.9781 -0.9719 18 6 4.2964 -8.2164 0.3748 19 6 5.4652 -9.0639 0.9336 20 6 6.5346 -8.0239 1.3204 21 8 5.9878 -6.7226 1.0480 22 6 3.7319 -5.0889 1.1793 23 6 2.8378 -4.0345 1.1783 24 1 -0.4851 0.8400 -0.0004 25 1 0.9652 -2.5260 2.0380 26 1 -0.3005 -1.8578 1.1910 27 1 2.0470 -4.0003 -2.1005 28 1 3.6481 -5.8710 -2.1007 29 1 3.8609 -8.6875 -0.5065 30 1 3.5374 -8.0487 1.1389 31 1 5.8481 -9.7379 0.1674 32 1 5.1457 -9.6269 1.8106 33 1 6.7708 -8.1120 2.3809 34 1 7.4349 -8.1794 0.7261 35 1 4.2028 -5.3967 2.1013 36 1 2.6109 -3.5181 2.0994 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260226390.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:59 Heat of formation + Delta-G solvation = -33.236687 kcal Electronic energy + Delta-G solvation = -17496.830860 eV Core-core repulsion = 14751.991078 eV Total energy + Delta-G solvation = -2744.839781 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.73583 -38.19746 -34.74240 -32.21857 -31.84438 -30.48267 -30.08497 -27.62809 -25.80159 -23.52970 -22.28489 -21.43608 -21.17163 -19.57829 -16.76495 -16.52454 -16.29113 -15.32941 -15.29393 -14.45188 -14.14720 -13.89799 -13.76827 -13.33541 -12.95876 -12.74476 -12.48618 -11.93918 -11.77134 -11.68444 -11.45892 -11.26465 -10.92525 -10.84530 -10.79313 -10.52391 -10.23347 -10.00466 -9.67340 -9.54133 -8.64708 -8.19680 -7.80003 -7.17081 -6.08202 -4.25171 2.05858 2.14295 3.23405 3.30469 3.35129 3.90112 4.31588 4.48842 4.54811 4.75267 4.82702 5.13233 5.14744 5.17279 5.43955 5.49135 5.60863 5.62388 5.68344 5.75036 5.86786 5.97567 6.05988 6.26244 6.32449 6.66880 6.67977 6.75850 6.86221 7.15068 7.24175 7.30795 7.69866 7.75178 7.85081 8.11869 8.67973 8.94036 9.12450 9.46719 10.88972 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.041420 B = 0.004789 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.840459 B = 5845.305621 C = 6058.180321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.066 3.934 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.056 0.944 9 C 0.237 3.763 10 H 0.047 0.953 11 N -0.850 5.850 12 C -0.018 4.018 13 C -0.127 4.127 14 C -0.113 4.113 15 C -0.119 4.119 16 C 0.126 3.874 17 H 0.072 0.928 18 C -0.144 4.144 19 C -0.157 4.157 20 C 0.045 3.955 21 O -0.368 6.368 22 C -0.098 4.098 23 C -0.112 4.112 24 H 0.265 0.735 25 H 0.311 0.689 26 H 0.355 0.645 27 H 0.117 0.883 28 H 0.110 0.890 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.115 0.885 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.456 -14.845 0.817 17.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.136 4.136 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.582 4.582 8 H 0.074 0.926 9 C 0.127 3.873 10 H 0.064 0.936 11 N -0.380 5.380 12 C -0.019 4.019 13 C -0.145 4.145 14 C -0.131 4.131 15 C -0.120 4.120 16 C 0.069 3.931 17 H 0.090 0.910 18 C -0.182 4.182 19 C -0.194 4.194 20 C -0.032 4.032 21 O -0.287 6.287 22 C -0.116 4.116 23 C -0.130 4.130 24 H 0.075 0.925 25 H 0.121 0.879 26 H 0.171 0.829 27 H 0.135 0.865 28 H 0.128 0.872 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.133 0.867 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 8.128 -15.248 0.642 17.291 hybrid contribution 0.885 1.754 0.016 1.965 sum 9.013 -13.495 0.658 16.241 Atomic orbital electron populations 1.69742 1.05852 1.27202 1.50534 1.25017 0.94936 0.99308 0.94364 0.86513 0.79867 0.82902 0.78275 1.20513 1.21137 1.19833 1.21833 0.93704 0.90996 1.51706 0.92552 1.18031 0.89090 0.88351 0.91788 0.93558 1.59544 1.18438 1.56023 1.03956 1.20520 0.94923 0.94384 0.92055 1.20952 0.99182 0.96070 0.98327 1.20686 0.98236 0.97829 0.96381 1.19246 0.99777 0.98564 0.94371 1.21850 0.87423 0.92802 0.91028 0.91000 1.23161 0.98105 0.94972 1.01958 1.22948 0.96239 0.98571 1.01672 1.23103 0.95901 0.83125 1.01084 1.88993 1.56265 1.27294 1.56178 1.20832 0.97473 0.96058 0.97259 1.20946 0.96753 0.96773 0.98557 0.92471 0.87907 0.82887 0.86490 0.87165 0.90189 0.90080 0.90887 0.90583 0.90115 0.92680 0.86697 0.86455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.71 11.54 55.43 0.64 -24.07 16 2 C 0.07 1.79 5.38 -17.82 -0.10 1.69 16 3 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.54 -14.76 8.70 -34.44 -0.30 -15.06 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.24 5.98 2.95 -70.02 -0.21 5.77 16 10 H 0.05 1.27 8.00 -51.93 -0.42 0.86 16 11 N -0.85 -20.50 9.02 -6.65 -0.06 -20.56 16 12 C -0.02 -0.40 4.89 -104.63 -0.51 -0.92 16 13 C -0.13 -2.52 9.67 -39.59 -0.38 -2.90 16 14 C -0.11 -1.93 9.71 -39.59 -0.38 -2.31 16 15 C -0.12 -2.01 5.09 -104.63 -0.53 -2.54 16 16 C 0.13 1.73 3.55 -26.83 -0.10 1.64 16 17 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 18 C -0.14 -1.61 6.58 -24.73 -0.16 -1.77 16 19 C -0.16 -1.40 7.01 -25.20 -0.18 -1.58 16 20 C 0.05 0.47 7.69 37.73 0.29 0.76 16 21 O -0.37 -5.37 10.29 -35.23 -0.36 -5.74 16 22 C -0.10 -1.79 9.38 -39.58 -0.37 -2.16 16 23 C -0.11 -2.29 9.29 -39.58 -0.37 -2.66 16 24 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 25 H 0.31 7.14 7.34 -39.29 -0.29 6.85 16 26 H 0.36 9.12 7.08 -39.29 -0.28 8.84 16 27 H 0.12 2.21 8.04 -52.49 -0.42 1.79 16 28 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.98 8.05 -51.93 -0.42 0.57 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.11 1.95 7.52 -52.49 -0.39 1.55 16 36 H 0.12 2.36 6.66 -52.48 -0.35 2.01 16 LS Contribution 297.20 15.07 4.48 4.48 Total: -1.00 -28.63 297.20 -8.69 -37.31 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -5.06 Total: 14.48 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: -3.30 Total: -22.02 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: 0.58 Total: -44.63 kcal Atomic # 8 Polarization: -5.37 SS G_CDS: -0.36 Total: -5.74 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.63 -8.69 -37.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260226390.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.075 kcal (2) G-P(sol) polarization free energy of solvation -28.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds