Wall clock time and date at job start Mon Mar 30 2020 06:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00180 * 2 1 4 4 H 1.48505 * 109.46630 * 85.14093 * 3 2 1 5 5 H 1.48498 * 109.47017 * 205.13770 * 3 2 1 6 6 H 1.48496 * 109.47029 * 325.14157 * 3 2 1 7 7 C 1.37881 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00299 * 172.97743 * 7 2 1 9 9 C 1.50704 * 119.99615 * 352.97948 * 7 2 1 10 10 H 1.08996 * 109.47455 * 57.11472 * 9 7 2 11 11 N 1.46895 * 109.47107 * 297.11013 * 9 7 2 12 12 C 1.50706 * 109.46996 * 177.11357 * 9 7 2 13 13 C 1.38264 * 119.94399 * 79.72189 * 12 9 7 14 14 C 1.38144 * 120.05495 * 179.72546 * 13 12 9 15 15 C 1.38735 * 119.94124 * 0.53330 * 14 13 12 16 16 O 1.35899 * 120.05472 * 179.72858 * 15 14 13 17 17 C 1.42905 * 116.99978 * 0.02562 * 16 15 14 18 18 C 1.53002 * 109.47326 * 180.02562 * 17 16 15 19 19 C 1.52998 * 117.49958 * 243.75462 * 18 17 16 20 20 C 1.52992 * 117.50092 * 175.09396 * 18 17 16 21 21 C 1.38722 * 119.89054 * 359.74143 * 15 14 13 22 22 C 1.38145 * 119.94711 * 0.02562 * 21 15 14 23 23 H 0.97001 * 119.99658 * 359.97438 * 1 2 3 24 24 H 1.00906 * 111.00494 * 306.32655 * 11 9 7 25 25 H 1.00902 * 111.00418 * 70.27688 * 11 9 7 26 26 H 1.07998 * 119.97174 * 359.97438 * 13 12 9 27 27 H 1.08003 * 120.02791 * 180.24760 * 14 13 12 28 28 H 1.08999 * 109.47484 * 300.00714 * 17 16 15 29 29 H 1.09004 * 109.46965 * 60.00845 * 17 16 15 30 30 H 1.08999 * 115.54961 * 29.41501 * 18 17 16 31 31 H 1.09005 * 117.49800 * 359.97438 * 19 18 17 32 32 H 1.08999 * 117.50329 * 145.01919 * 19 18 17 33 33 H 1.09004 * 117.49587 * 214.98165 * 20 18 17 34 34 H 1.08996 * 117.50158 * 359.97438 * 20 18 17 35 35 H 1.08006 * 120.02959 * 179.97438 * 21 15 14 36 36 H 1.08001 * 119.97884 * 180.02562 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3940 2.1056 1.3951 5 1 3.5944 1.4126 -0.5947 6 1 1.5018 2.6208 -0.8002 7 6 2.0046 -1.1941 -0.0005 8 1 3.0784 -1.1976 -0.1149 9 6 1.2594 -2.4944 0.1584 10 1 0.5071 -2.5802 -0.6255 11 7 0.6033 -2.5253 1.4723 12 6 2.2278 -3.6443 0.0533 13 6 3.0078 -3.9914 1.1410 14 6 3.8921 -5.0487 1.0490 15 6 4.0051 -5.7555 -0.1395 16 8 4.8783 -6.7925 -0.2342 17 6 5.6482 -7.1007 0.9295 18 6 6.5677 -8.2872 0.6333 19 6 6.3385 -9.5743 1.4281 20 6 7.5605 -8.7005 1.7215 21 6 3.2255 -5.4017 -1.2310 22 6 2.3392 -4.3466 -1.1325 23 1 -0.4850 0.8401 0.0004 24 1 1.2657 -2.3444 2.2117 25 1 -0.1654 -1.8727 1.5082 26 1 2.9227 -3.4379 2.0645 27 1 4.4982 -5.3219 1.9001 28 1 6.2502 -6.2353 1.2067 29 1 4.9787 -7.3558 1.7511 30 1 6.8876 -8.3865 -0.4040 31 1 5.5328 -9.5757 2.1623 32 1 6.5080 -10.5203 0.9139 33 1 8.5336 -9.0720 1.4001 34 1 7.5590 -8.1270 2.6483 35 1 3.3120 -5.9501 -2.1575 36 1 1.7318 -4.0710 -1.9819 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260254959.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:35 Heat of formation + Delta-G solvation = 1.594857 kcal Electronic energy + Delta-G solvation = -17085.997446 eV Core-core repulsion = 14342.668073 eV Total energy + Delta-G solvation = -2743.329372 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.72989 -37.90978 -36.66168 -34.25251 -31.45441 -30.37893 -29.01803 -27.24643 -25.73016 -22.83287 -22.64324 -22.19834 -20.53091 -19.86758 -17.82053 -16.53125 -16.32580 -15.63498 -15.14593 -14.87072 -14.38243 -14.28191 -13.73840 -13.49712 -12.93820 -12.72865 -12.39480 -12.26554 -11.80315 -11.62590 -11.42438 -11.22878 -10.98498 -10.75883 -10.74382 -10.67874 -10.21641 -10.05670 -9.89757 -9.54267 -8.61586 -8.33563 -7.48295 -7.16836 -6.10883 -4.24674 2.01693 2.18967 3.21385 3.24238 3.29625 3.33977 3.64389 4.30178 4.53868 4.55226 4.63587 4.79905 5.06325 5.12795 5.23548 5.35901 5.41156 5.46442 5.51838 5.61338 5.83032 5.85320 5.93739 6.09967 6.18445 6.30569 6.61629 6.66256 6.91772 7.13844 7.22983 7.41360 7.74019 7.78295 7.92871 8.11761 8.69148 8.86425 9.03553 9.44630 10.88491 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.039947 B = 0.004225 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.763118 B = 6625.648340 C = 6809.456467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.067 3.933 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.273 1.273 6 H -0.285 1.285 7 C -0.544 4.544 8 H 0.056 0.944 9 C 0.240 3.760 10 H 0.050 0.950 11 N -0.848 5.848 12 C -0.054 4.054 13 C -0.071 4.071 14 C -0.210 4.210 15 C 0.096 3.904 16 O -0.320 6.320 17 C 0.093 3.907 18 C -0.154 4.154 19 C -0.177 4.177 20 C -0.173 4.173 21 C -0.152 4.152 22 C -0.088 4.088 23 H 0.264 0.736 24 H 0.313 0.687 25 H 0.347 0.653 26 H 0.119 0.881 27 H 0.115 0.885 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.115 0.885 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.119 0.881 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.354 -13.445 2.784 17.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.136 4.136 3 Si 0.722 3.278 4 H -0.207 1.207 5 H -0.198 1.198 6 H -0.211 1.211 7 C -0.583 4.583 8 H 0.075 0.925 9 C 0.130 3.870 10 H 0.068 0.932 11 N -0.376 5.376 12 C -0.055 4.055 13 C -0.090 4.090 14 C -0.229 4.229 15 C 0.052 3.948 16 O -0.235 6.235 17 C 0.018 3.982 18 C -0.172 4.172 19 C -0.214 4.214 20 C -0.210 4.210 21 C -0.171 4.171 22 C -0.106 4.106 23 H 0.074 0.926 24 H 0.123 0.877 25 H 0.160 0.840 26 H 0.137 0.863 27 H 0.132 0.868 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.133 0.867 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.137 0.863 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.048 -14.219 2.435 17.580 hybrid contribution 0.855 2.129 0.254 2.308 sum 10.903 -12.091 2.689 16.501 Atomic orbital electron populations 1.69878 1.05847 1.27126 1.50101 1.25028 0.94895 0.99296 0.94391 0.86541 0.80053 0.83179 0.78036 1.20658 1.19802 1.21124 1.21831 0.94254 0.91137 1.51121 0.92548 1.17957 0.90770 0.88409 0.89823 0.93243 1.59500 1.14399 1.58571 1.05083 1.20396 0.96810 0.96111 0.92213 1.20724 0.94129 0.95156 0.98943 1.21109 1.04353 1.00522 0.96918 1.18793 0.92247 0.88938 0.94844 1.85962 1.51792 1.48414 1.37330 1.22159 0.92470 0.96189 0.87397 1.22119 1.01212 0.95410 0.98428 1.23103 1.00116 0.94953 1.03247 1.22988 0.94642 1.03598 0.99723 1.20263 0.99168 1.00431 0.97252 1.20868 0.97621 0.94104 0.98041 0.92580 0.87699 0.83981 0.86265 0.86751 0.91936 0.92207 0.86716 0.88520 0.88545 0.88326 0.88528 0.86286 0.85857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.53 12.11 55.43 0.67 -23.86 16 2 C 0.07 1.79 5.35 -17.82 -0.10 1.70 16 3 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.54 -14.57 8.61 -34.44 -0.30 -14.87 16 8 H 0.06 1.54 7.75 -52.49 -0.41 1.14 16 9 C 0.24 5.96 2.82 -70.01 -0.20 5.76 16 10 H 0.05 1.35 8.00 -51.93 -0.42 0.93 16 11 N -0.85 -19.89 8.92 -6.65 -0.06 -19.95 16 12 C -0.05 -1.20 4.90 -104.60 -0.51 -1.71 16 13 C -0.07 -1.42 9.30 -39.61 -0.37 -1.79 16 14 C -0.21 -3.71 9.04 -39.43 -0.36 -4.07 16 15 C 0.10 1.70 6.69 -39.22 -0.26 1.44 16 16 O -0.32 -5.11 10.14 -19.42 -0.20 -5.31 16 17 C 0.09 1.15 5.02 37.16 0.19 1.34 16 18 C -0.15 -1.56 6.05 -90.62 -0.55 -2.11 16 19 C -0.18 -1.51 10.18 -26.70 -0.27 -1.78 16 20 C -0.17 -1.37 10.25 -26.70 -0.27 -1.64 16 21 C -0.15 -2.77 9.99 -39.44 -0.39 -3.17 16 22 C -0.09 -1.76 9.66 -39.60 -0.38 -2.14 16 23 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 24 H 0.31 6.98 7.56 -39.29 -0.30 6.68 16 25 H 0.35 8.61 7.76 -39.29 -0.30 8.30 16 26 H 0.12 2.30 6.81 -52.49 -0.36 1.94 16 27 H 0.11 1.70 6.30 -52.48 -0.33 1.37 16 28 H 0.06 0.74 7.66 -51.93 -0.40 0.35 16 29 H 0.06 0.70 7.40 -51.93 -0.38 0.32 16 30 H 0.11 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.10 0.81 8.03 -51.93 -0.42 0.39 16 32 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.12 1.90 8.06 -52.48 -0.42 1.48 16 36 H 0.12 2.34 8.03 -52.49 -0.42 1.91 16 LS Contribution 304.13 15.07 4.58 4.58 Total: -1.00 -28.23 304.13 -8.78 -37.01 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -4.98 Total: 14.69 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: -3.77 Total: -23.04 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: 0.61 Total: -43.81 kcal Atomic # 8 Polarization: -5.11 SS G_CDS: -0.20 Total: -5.31 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.23 -8.78 -37.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260254959.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.602 kcal (2) G-P(sol) polarization free energy of solvation -28.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds