Wall clock time and date at job start Mon Mar 30 2020 06:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00128 * 2 1 4 4 H 1.48503 * 109.47011 * 270.00355 * 3 2 1 5 5 H 1.48498 * 109.47380 * 30.00215 * 3 2 1 6 6 H 1.48496 * 109.47113 * 150.00301 * 3 2 1 7 7 C 1.37879 * 119.99712 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99738 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99870 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.46751 * 299.98619 * 9 7 2 11 11 C 1.53037 * 109.46084 * 180.02562 * 9 7 2 12 12 C 1.53126 * 109.27880 * 180.81072 * 11 9 7 13 13 C 1.53114 * 109.16239 * 57.65311 * 12 11 9 14 14 C 1.53037 * 109.31211 * 302.32855 * 13 12 11 15 15 H 1.09007 * 109.46083 * 299.18512 * 14 13 12 16 16 C 1.50693 * 109.46436 * 179.21586 * 14 13 12 17 17 C 1.38159 * 120.02914 * 264.99945 * 16 14 13 18 18 C 1.38248 * 120.05801 * 179.97438 * 17 16 14 19 19 C 1.38286 * 120.11167 * 359.97438 * 18 17 16 20 20 C 1.38124 * 120.05502 * 359.97438 * 19 18 17 21 21 C 1.38715 * 120.02955 * 84.72122 * 16 14 13 22 22 O 1.35900 * 120.05141 * 0.02562 * 21 16 14 23 23 N 1.46850 * 109.46168 * 59.95438 * 9 7 2 24 24 H 0.97009 * 119.99890 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.50150 * 60.86843 * 11 9 7 26 26 H 1.08997 * 109.53578 * 300.76466 * 11 9 7 27 27 H 1.09006 * 109.51941 * 297.74603 * 12 11 9 28 28 H 1.08997 * 109.57191 * 177.59586 * 12 11 9 29 29 H 1.09002 * 109.50377 * 62.28979 * 13 12 11 30 30 H 1.09003 * 109.50316 * 182.36975 * 13 12 11 31 31 H 1.07996 * 119.97540 * 359.97438 * 17 16 14 32 32 H 1.08003 * 119.94671 * 179.97438 * 18 17 16 33 33 H 1.07997 * 119.97342 * 180.02562 * 19 18 17 34 34 H 1.07993 * 120.02993 * 180.02562 * 20 19 18 35 35 H 0.96705 * 114.00137 * 90.00253 * 22 21 16 36 36 H 1.00903 * 110.99884 * 305.85133 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 1 0.6248 -2.5570 0.8898 11 6 2.2455 -3.6622 -0.0005 12 6 1.4757 -4.9857 -0.0210 13 6 0.5673 -5.0198 -1.2531 14 6 -0.3794 -3.8179 -1.2173 15 1 -0.9980 -3.8693 -0.3212 16 6 -1.2621 -3.8374 -2.4384 17 6 -0.9100 -3.1083 -3.5579 18 6 -1.7192 -3.1262 -4.6787 19 6 -2.8824 -3.8741 -4.6827 20 6 -3.2383 -4.6056 -3.5664 21 6 -2.4260 -4.5921 -2.4416 22 8 -2.7719 -5.3143 -1.3435 23 7 0.4054 -2.5759 -1.1988 24 1 -0.4850 0.8401 0.0004 25 1 2.8621 -3.6137 0.8969 26 1 2.8817 -3.5977 -0.8832 27 1 0.8694 -5.0684 0.8811 28 1 2.1795 -5.8169 -0.0641 29 1 1.1766 -4.9763 -2.1558 30 1 -0.0146 -5.9415 -1.2508 31 1 -0.0019 -2.5238 -3.5575 32 1 -1.4424 -2.5552 -5.5527 33 1 -3.5126 -3.8868 -5.5596 34 1 -4.1466 -5.1898 -3.5701 35 1 -3.3219 -4.8308 -0.7120 36 1 -0.1946 -1.7678 -1.2703 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260256633.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:26 Heat of formation + Delta-G solvation = -30.965251 kcal Electronic energy + Delta-G solvation = -18249.102778 eV Core-core repulsion = 15504.361493 eV Total energy + Delta-G solvation = -2744.741285 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.69572 -37.32916 -36.26353 -33.06676 -31.98900 -30.15503 -29.58917 -28.31130 -25.19585 -23.32138 -22.15993 -21.56932 -20.28523 -18.59734 -17.97855 -16.61630 -15.73886 -15.37788 -15.00869 -14.64772 -14.29651 -13.62000 -13.29871 -13.16463 -12.93732 -12.44786 -12.28722 -12.18438 -11.76066 -11.54006 -11.29919 -10.95585 -10.82161 -10.47698 -10.30927 -10.20790 -10.05875 -9.72662 -9.27389 -8.95849 -8.58658 -8.44329 -8.17919 -6.88132 -6.09992 -4.12863 1.58443 1.72060 3.29008 3.35774 3.39006 3.99191 4.40014 4.55853 5.02317 5.19906 5.26921 5.40640 5.57229 5.70014 5.73666 5.85531 5.95291 6.09498 6.22032 6.26475 6.34922 6.43901 6.51112 6.65022 6.69606 6.82097 6.88188 6.94429 6.97344 7.02128 7.15440 7.23493 7.57584 7.88217 7.93791 8.20909 8.67835 8.99181 9.12533 9.55087 10.99646 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.022895 B = 0.007488 C = 0.006285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.682395 B = 3738.404264 C = 4453.743717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.065 3.935 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.502 4.502 8 H 0.060 0.940 9 C 0.217 3.783 10 H -0.006 1.006 11 C -0.106 4.106 12 C -0.119 4.119 13 C -0.096 4.096 14 C 0.128 3.872 15 H 0.030 0.970 16 C -0.087 4.087 17 C -0.078 4.078 18 C -0.135 4.135 19 C -0.119 4.119 20 C -0.154 4.154 21 C 0.099 3.901 22 O -0.498 6.498 23 N -0.677 5.677 24 H 0.263 0.737 25 H 0.048 0.952 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.143 0.857 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.385 0.615 36 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.159 -7.304 -5.467 10.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.136 4.136 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.541 4.541 8 H 0.078 0.922 9 C 0.110 3.890 10 H 0.012 0.988 11 C -0.145 4.145 12 C -0.156 4.156 13 C -0.134 4.134 14 C 0.017 3.983 15 H 0.047 0.953 16 C -0.088 4.088 17 C -0.096 4.096 18 C -0.153 4.153 19 C -0.137 4.137 20 C -0.173 4.173 21 C 0.054 3.946 22 O -0.307 6.307 23 N -0.315 5.315 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.161 0.839 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.240 0.760 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -4.476 -7.863 -6.107 10.916 hybrid contribution -0.692 1.469 0.895 1.854 sum -5.168 -6.394 -5.212 9.735 Atomic orbital electron populations 1.69672 1.05992 1.26952 1.51628 1.25012 0.94899 0.99307 0.94390 0.86515 0.79766 0.83085 0.78125 1.20588 1.21372 1.19949 1.21206 0.93137 0.90134 1.49603 0.92177 1.18976 0.90299 0.92399 0.87368 0.98827 1.21647 0.98513 0.93953 1.00348 1.21607 0.98186 0.98332 0.97507 1.21473 0.97138 0.96249 0.98532 1.20167 0.92178 0.94028 0.91941 0.95253 1.20478 0.95290 0.95690 0.97377 1.21216 0.99983 0.97173 0.91244 1.21208 0.95297 1.00119 0.98707 1.20907 0.97330 0.97729 0.97709 1.21252 1.00123 1.01632 0.94271 1.18373 0.93991 0.94364 0.87859 1.84796 1.73080 1.40848 1.32017 1.60883 1.25415 1.02481 1.42730 0.92690 0.93321 0.92519 0.93159 0.93378 0.92038 0.92911 0.83919 0.86263 0.86424 0.86210 0.75993 0.81171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.95 11.48 55.43 0.64 -24.32 16 2 C 0.06 1.76 5.32 -17.82 -0.09 1.66 16 3 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.50 -13.61 8.76 -34.44 -0.30 -13.91 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.22 5.42 2.40 -68.87 -0.17 5.26 16 10 H -0.01 -0.16 8.14 -51.93 -0.42 -0.58 16 11 C -0.11 -2.28 5.31 -26.65 -0.14 -2.42 16 12 C -0.12 -2.21 6.00 -26.61 -0.16 -2.37 16 13 C -0.10 -1.80 5.35 -26.65 -0.14 -1.94 16 14 C 0.13 2.59 2.36 -68.83 -0.16 2.43 16 15 H 0.03 0.64 7.70 -51.92 -0.40 0.24 16 16 C -0.09 -1.61 4.99 -104.48 -0.52 -2.13 16 17 C -0.08 -1.39 9.21 -39.61 -0.36 -1.75 16 18 C -0.14 -2.02 10.04 -39.56 -0.40 -2.42 16 19 C -0.12 -1.62 10.04 -39.61 -0.40 -2.02 16 20 C -0.15 -2.23 9.99 -39.43 -0.39 -2.63 16 21 C 0.10 1.63 6.68 -39.21 -0.26 1.37 16 22 O -0.50 -7.59 12.64 -19.43 -0.25 -7.83 16 23 N -0.68 -15.87 4.96 -102.15 -0.51 -16.37 16 24 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 25 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.14 2.72 7.26 -52.49 -0.38 2.34 16 32 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 33 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 34 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.38 4.38 9.06 45.56 0.41 4.79 16 36 H 0.36 9.31 6.39 -39.29 -0.25 9.06 16 LS Contribution 294.05 15.07 4.43 4.43 Total: -1.00 -28.62 294.05 -8.60 -37.22 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -4.39 Total: 11.75 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: -3.51 Total: -20.87 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.13 Total: -40.69 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -0.25 Total: -7.83 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.62 -8.60 -37.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260256633.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.253 kcal (2) G-P(sol) polarization free energy of solvation -28.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds