Wall clock time and date at job start Mon Mar 30 2020 06:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00128 * 2 1 4 4 H 1.48503 * 109.47011 * 270.00355 * 3 2 1 5 5 H 1.48498 * 109.47380 * 30.00215 * 3 2 1 6 6 H 1.48496 * 109.47113 * 150.00301 * 3 2 1 7 7 C 1.37879 * 119.99712 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99738 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99870 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.46751 * 299.98619 * 9 7 2 11 11 C 1.53037 * 109.46084 * 180.02562 * 9 7 2 12 12 C 1.53126 * 109.27880 * 180.81072 * 11 9 7 13 13 C 1.53114 * 109.16239 * 57.65311 * 12 11 9 14 14 C 1.53037 * 109.31211 * 302.32855 * 13 12 11 15 15 H 1.09007 * 109.46083 * 299.18512 * 14 13 12 16 16 C 1.50693 * 109.46436 * 179.21586 * 14 13 12 17 17 C 1.38159 * 120.02914 * 264.99945 * 16 14 13 18 18 C 1.38248 * 120.05801 * 179.97438 * 17 16 14 19 19 C 1.38286 * 120.11167 * 359.97438 * 18 17 16 20 20 C 1.38124 * 120.05502 * 359.97438 * 19 18 17 21 21 C 1.38715 * 120.02955 * 84.72122 * 16 14 13 22 22 O 1.35900 * 120.05141 * 0.02562 * 21 16 14 23 23 N 1.46850 * 109.46168 * 59.95438 * 9 7 2 24 24 H 0.97009 * 119.99890 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.50150 * 60.86843 * 11 9 7 26 26 H 1.08997 * 109.53578 * 300.76466 * 11 9 7 27 27 H 1.09006 * 109.51941 * 297.74603 * 12 11 9 28 28 H 1.08997 * 109.57191 * 177.59586 * 12 11 9 29 29 H 1.09002 * 109.50377 * 62.28979 * 13 12 11 30 30 H 1.09003 * 109.50316 * 182.36975 * 13 12 11 31 31 H 1.07996 * 119.97540 * 359.97438 * 17 16 14 32 32 H 1.08003 * 119.94671 * 179.97438 * 18 17 16 33 33 H 1.07997 * 119.97342 * 180.02562 * 19 18 17 34 34 H 1.07993 * 120.02993 * 180.02562 * 20 19 18 35 35 H 0.96705 * 114.00137 * 90.00253 * 22 21 16 36 36 H 1.00903 * 110.99884 * 305.85133 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 1 0.6248 -2.5570 0.8898 11 6 2.2455 -3.6622 -0.0005 12 6 1.4757 -4.9857 -0.0210 13 6 0.5673 -5.0198 -1.2531 14 6 -0.3794 -3.8179 -1.2173 15 1 -0.9980 -3.8693 -0.3212 16 6 -1.2621 -3.8374 -2.4384 17 6 -0.9100 -3.1083 -3.5579 18 6 -1.7192 -3.1262 -4.6787 19 6 -2.8824 -3.8741 -4.6827 20 6 -3.2383 -4.6056 -3.5664 21 6 -2.4260 -4.5921 -2.4416 22 8 -2.7719 -5.3143 -1.3435 23 7 0.4054 -2.5759 -1.1988 24 1 -0.4850 0.8401 0.0004 25 1 2.8621 -3.6137 0.8969 26 1 2.8817 -3.5977 -0.8832 27 1 0.8694 -5.0684 0.8811 28 1 2.1795 -5.8169 -0.0641 29 1 1.1766 -4.9763 -2.1558 30 1 -0.0146 -5.9415 -1.2508 31 1 -0.0019 -2.5238 -3.5575 32 1 -1.4424 -2.5552 -5.5527 33 1 -3.5126 -3.8868 -5.5596 34 1 -4.1466 -5.1898 -3.5701 35 1 -3.3219 -4.8308 -0.7120 36 1 -0.1946 -1.7678 -1.2703 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260256633.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:26 Heat of formation + Delta-G solvation = -49.400510 kcal Electronic energy + Delta-G solvation = -18249.902191 eV Core-core repulsion = 15504.361493 eV Total energy + Delta-G solvation = -2745.540697 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.00085 -38.95547 -37.45341 -34.99919 -33.51771 -31.98301 -30.82628 -29.79042 -27.14225 -24.81476 -23.53545 -23.12915 -21.79250 -20.27133 -19.23020 -18.51970 -17.26741 -16.69473 -16.58838 -16.14782 -15.94478 -15.00653 -14.96159 -14.58722 -14.49463 -14.14800 -14.01269 -13.77986 -13.08183 -12.93812 -12.81865 -12.64392 -12.48079 -12.21202 -12.07823 -11.75202 -11.59771 -11.46795 -10.89680 -10.85286 -10.61641 -9.68711 -9.42585 -8.77287 -8.16630 -6.27952 0.37972 0.49702 1.41876 1.43205 1.52983 2.42425 2.79219 3.07480 3.40356 3.72310 3.95437 4.15401 4.15507 4.24373 4.31437 4.37997 4.56653 4.61823 4.67829 4.81984 4.91391 5.04084 5.05298 5.17267 5.18085 5.24534 5.28242 5.35713 5.50323 5.59495 5.64136 5.76916 5.81541 6.03232 6.20755 6.66027 6.83930 7.01106 7.14207 7.43880 8.91392 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.022895 B = 0.007488 C = 0.006285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.682395 B = 3738.404264 C = 4453.743717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.020 3.980 3 Si 0.961 3.039 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.215 3.785 10 H -0.046 1.046 11 C -0.101 4.101 12 C -0.113 4.113 13 C -0.089 4.089 14 C 0.130 3.870 15 H 0.010 0.990 16 C -0.115 4.115 17 C -0.099 4.099 18 C -0.135 4.135 19 C -0.107 4.107 20 C -0.151 4.151 21 C 0.091 3.909 22 O -0.505 6.505 23 N -0.676 5.676 24 H 0.264 0.736 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.118 0.882 32 H 0.143 0.857 33 H 0.157 0.843 34 H 0.148 0.852 35 H 0.400 0.600 36 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.893 -7.993 -6.908 12.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.179 4.179 3 Si 0.787 3.213 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.565 4.565 8 H 0.074 0.926 9 C 0.107 3.893 10 H -0.028 1.028 11 C -0.139 4.139 12 C -0.151 4.151 13 C -0.127 4.127 14 C 0.020 3.980 15 H 0.028 0.972 16 C -0.116 4.116 17 C -0.117 4.117 18 C -0.153 4.153 19 C -0.125 4.125 20 C -0.169 4.169 21 C 0.046 3.954 22 O -0.317 6.317 23 N -0.312 5.312 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.136 0.864 32 H 0.161 0.839 33 H 0.175 0.825 34 H 0.166 0.834 35 H 0.257 0.743 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.207 -8.570 -7.541 12.547 hybrid contribution -0.538 1.660 1.331 2.195 sum -5.744 -6.910 -6.210 10.923 Atomic orbital electron populations 1.69796 1.07169 1.27646 1.51836 1.25756 0.95721 1.02464 0.93924 0.85514 0.78609 0.79025 0.78179 1.20133 1.20973 1.19416 1.21519 0.93211 0.91590 1.50225 0.92551 1.18931 0.90608 0.93366 0.86408 1.02821 1.21544 0.97847 0.94214 1.00288 1.21574 0.98447 0.97640 0.97390 1.21425 0.96897 0.96043 0.98345 1.20158 0.92361 0.93029 0.92489 0.97218 1.20391 0.96445 0.97958 0.96819 1.21120 1.00200 0.97789 0.92617 1.21471 0.95265 1.00259 0.98319 1.21352 0.96704 0.95804 0.98595 1.21591 1.00497 1.01396 0.93434 1.18499 0.93694 0.94176 0.88983 1.84741 1.73544 1.41121 1.32313 1.60845 1.25669 1.03206 1.41442 0.92654 0.92949 0.92884 0.93342 0.90279 0.92360 0.91522 0.86384 0.83926 0.82500 0.83410 0.74267 0.82964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.58 11.48 21.45 0.25 -52.33 16 2 C 0.02 1.12 5.32 84.66 0.45 1.57 16 3 Si 0.96 43.67 29.54 68.60 2.03 45.70 16 4 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.53 -29.44 8.76 25.60 0.22 -29.21 16 8 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 9 C 0.21 11.18 2.40 44.19 0.11 11.29 16 10 H -0.05 -2.67 8.14 -2.39 -0.02 -2.69 16 11 C -0.10 -4.38 5.31 30.65 0.16 -4.22 16 12 C -0.11 -4.15 6.00 30.67 0.18 -3.96 16 13 C -0.09 -3.33 5.35 30.64 0.16 -3.17 16 14 C 0.13 5.44 2.36 44.17 0.10 5.54 16 15 H 0.01 0.45 7.70 -2.38 -0.02 0.43 16 16 C -0.12 -4.28 4.99 -19.77 -0.10 -4.38 16 17 C -0.10 -3.54 9.21 22.25 0.21 -3.33 16 18 C -0.14 -3.77 10.04 22.28 0.22 -3.55 16 19 C -0.11 -2.53 10.04 22.25 0.22 -2.31 16 20 C -0.15 -3.90 9.99 22.37 0.22 -3.68 16 21 C 0.09 2.91 6.68 22.51 0.15 3.06 16 22 O -0.51 -14.86 12.64 -92.42 -1.17 -16.02 16 23 N -0.68 -33.07 4.96 -477.09 -2.37 -35.43 16 24 H 0.26 14.31 8.31 -92.70 -0.77 13.54 16 25 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 28 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.07 2.30 8.14 -2.39 -0.02 2.29 16 31 H 0.12 4.72 7.26 -2.91 -0.02 4.69 16 32 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 33 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 34 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 35 H 0.40 8.82 9.06 -74.05 -0.67 8.15 16 36 H 0.35 18.73 6.39 -89.69 -0.57 18.16 16 Total: -1.00 -62.96 294.05 0.90 -62.06 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: -0.16 Total: 32.39 kcal Atomic # 6 Polarization: -38.68 SS G_CDS: 2.32 Total: -36.36 kcal Atomic # 7 Polarization: -85.65 SS G_CDS: -2.12 Total: -87.77 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -1.17 Total: -16.02 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -62.96 0.90 -62.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260256633.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.664 kcal (2) G-P(sol) polarization free energy of solvation -62.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds