Wall clock time and date at job start Mon Mar 30 2020 06:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86797 * 120.00160 * 2 1 4 4 H 1.48493 * 109.47252 * 269.99865 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.99685 * 3 2 1 6 6 H 1.48504 * 109.47308 * 149.99463 * 3 2 1 7 7 C 1.37877 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00015 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99774 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46097 * 60.02970 * 9 7 2 11 11 C 1.53038 * 109.46204 * 179.97438 * 9 7 2 12 12 C 1.53122 * 109.28074 * 179.18567 * 11 9 7 13 13 C 1.53115 * 109.16028 * 302.34973 * 12 11 9 14 14 C 1.53044 * 109.27784 * 57.65425 * 13 12 11 15 15 H 1.08992 * 109.46553 * 60.82331 * 14 13 12 16 16 C 1.50705 * 109.45883 * 180.80640 * 14 13 12 17 17 C 1.38166 * 120.02903 * 99.72403 * 16 14 13 18 18 C 1.38244 * 120.05257 * 180.29451 * 17 16 14 19 19 C 1.38289 * 120.11625 * 359.95507 * 18 17 16 20 20 C 1.38125 * 120.05375 * 0.04238 * 19 18 17 21 21 C 1.38715 * 120.02514 * 279.99318 * 16 14 13 22 22 O 1.35898 * 120.05243 * 359.70442 * 21 16 14 23 23 N 1.46840 * 109.45703 * 300.05068 * 9 7 2 24 24 H 0.97002 * 120.00321 * 0.02562 * 1 2 3 25 25 H 1.09010 * 109.49970 * 59.24734 * 11 9 7 26 26 H 1.09000 * 109.53996 * 299.15302 * 11 9 7 27 27 H 1.08993 * 109.52623 * 182.44233 * 12 11 9 28 28 H 1.08997 * 109.57018 * 62.28490 * 12 11 9 29 29 H 1.08996 * 109.50345 * 297.70967 * 13 12 11 30 30 H 1.08999 * 109.50312 * 177.58972 * 13 12 11 31 31 H 1.08001 * 119.97380 * 0.26819 * 17 16 14 32 32 H 1.08000 * 119.94010 * 179.97438 * 18 17 16 33 33 H 1.07992 * 119.97564 * 180.02562 * 19 18 17 34 34 H 1.07995 * 120.03167 * 179.97438 * 20 19 18 35 35 H 0.96704 * 113.99911 * 90.00299 * 22 21 16 36 36 H 1.00896 * 111.00212 * 54.14697 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4991 0.0017 10 1 0.6244 -2.5575 -0.8883 11 6 2.2456 -3.6622 0.0015 12 6 1.4759 -4.9857 0.0232 13 6 0.5685 -5.0192 1.2560 14 6 -0.3776 -3.8168 1.2198 15 1 -0.9968 -3.8686 0.3243 16 6 -1.2595 -3.8348 2.4418 17 6 -0.9585 -3.0297 3.5236 18 6 -1.7637 -3.0504 4.6471 19 6 -2.8724 -3.8757 4.6912 20 6 -3.1776 -4.6823 3.6123 21 6 -2.3709 -4.6638 2.4835 22 8 -2.6692 -5.4561 1.4205 23 7 0.4064 -2.5752 1.2005 24 1 -0.4851 0.8400 -0.0004 25 1 2.8821 -3.5968 0.8840 26 1 2.8621 -3.6144 -0.8961 27 1 2.1804 -5.8162 0.0668 28 1 0.8690 -5.0700 -0.8783 29 1 1.1785 -4.9752 2.1582 30 1 -0.0139 -5.9405 1.2543 31 1 -0.0933 -2.3841 3.4915 32 1 -1.5265 -2.4207 5.4919 33 1 -3.5001 -3.8897 5.5699 34 1 -4.0434 -5.3270 3.6472 35 1 -2.2605 -6.3319 1.4557 36 1 -0.1936 -1.7672 1.2721 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260256642.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:32 Heat of formation + Delta-G solvation = -30.051601 kcal Electronic energy + Delta-G solvation = -18257.319306 eV Core-core repulsion = 15512.617640 eV Total energy + Delta-G solvation = -2744.701666 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.72277 -37.33467 -36.29040 -33.06119 -32.01372 -30.16699 -29.58862 -28.33363 -25.21820 -23.32889 -22.15717 -21.58331 -20.33614 -18.58811 -17.96942 -16.60985 -15.82270 -15.39792 -14.95165 -14.62204 -14.32301 -13.65609 -13.30908 -13.24797 -12.96684 -12.39296 -12.29842 -12.18035 -11.78928 -11.55932 -11.32069 -10.95168 -10.80919 -10.49389 -10.32222 -10.21776 -10.10362 -9.74939 -9.28657 -8.95174 -8.57516 -8.44983 -8.17307 -6.87152 -6.07546 -4.11226 1.58008 1.72171 3.29799 3.37010 3.40654 3.99166 4.41392 4.52664 5.02956 5.19469 5.26909 5.40149 5.54700 5.63528 5.67058 5.82856 5.93648 6.08916 6.18786 6.26020 6.30443 6.39803 6.47038 6.61808 6.67534 6.80905 6.85119 6.91996 6.95671 7.00790 7.14220 7.23966 7.58402 7.90011 7.93048 8.21753 8.68912 9.00662 9.13070 9.56743 11.01923 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.023187 B = 0.007500 C = 0.006231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.290821 B = 3732.298102 C = 4492.909280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.065 3.935 3 Si 0.897 3.103 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.504 4.504 8 H 0.060 0.940 9 C 0.216 3.784 10 H -0.005 1.005 11 C -0.106 4.106 12 C -0.119 4.119 13 C -0.096 4.096 14 C 0.123 3.877 15 H 0.038 0.962 16 C -0.087 4.087 17 C -0.079 4.079 18 C -0.135 4.135 19 C -0.119 4.119 20 C -0.154 4.154 21 C 0.098 3.902 22 O -0.496 6.496 23 N -0.677 5.677 24 H 0.264 0.736 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.144 0.856 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.382 0.618 36 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.420 -9.643 6.651 12.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.136 4.136 3 Si 0.725 3.275 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.542 4.542 8 H 0.078 0.922 9 C 0.109 3.891 10 H 0.012 0.988 11 C -0.144 4.144 12 C -0.157 4.157 13 C -0.134 4.134 14 C 0.012 3.988 15 H 0.055 0.945 16 C -0.088 4.088 17 C -0.098 4.098 18 C -0.153 4.153 19 C -0.137 4.137 20 C -0.173 4.173 21 C 0.053 3.947 22 O -0.305 6.305 23 N -0.315 5.315 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.162 0.838 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.237 0.763 36 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -3.399 -9.266 6.843 12.010 hybrid contribution -0.157 0.695 -0.538 0.893 sum -3.557 -8.571 6.305 11.219 Atomic orbital electron populations 1.69674 1.05979 1.27021 1.51367 1.25020 0.94884 0.99317 0.94402 0.86520 0.79856 0.83165 0.77969 1.20815 1.21254 1.19849 1.21189 0.93097 0.90121 1.49834 0.92188 1.18980 0.90294 0.92402 0.87443 0.98770 1.21642 0.98515 0.93885 1.00382 1.21603 0.98179 0.98472 0.97405 1.21462 0.97237 0.95833 0.98877 1.20197 0.92076 0.94071 0.92453 0.94473 1.20489 0.94348 0.96884 0.97045 1.21245 0.99693 0.97384 0.91429 1.21212 0.95711 0.99629 0.98713 1.20907 0.97706 0.97129 0.97972 1.21252 1.00742 1.02074 0.93199 1.18375 0.94127 0.95176 0.86975 1.84820 1.74224 1.28848 1.42616 1.60881 1.25439 1.02530 1.42634 0.92623 0.92509 0.93267 0.93363 0.93039 0.91837 0.93761 0.83801 0.86251 0.86417 0.86200 0.76317 0.81034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.38 11.48 55.43 0.64 -24.75 16 2 C 0.07 1.78 5.32 -17.82 -0.09 1.68 16 3 Si 0.90 21.19 29.54 -169.99 -5.02 16.16 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.50 -13.73 8.76 -34.44 -0.30 -14.03 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 9 C 0.22 5.43 2.39 -68.88 -0.16 5.27 16 10 H -0.01 -0.15 8.14 -51.93 -0.42 -0.57 16 11 C -0.11 -2.24 5.31 -26.65 -0.14 -2.39 16 12 C -0.12 -2.12 6.00 -26.61 -0.16 -2.28 16 13 C -0.10 -1.68 5.35 -26.65 -0.14 -1.82 16 14 C 0.12 2.50 2.31 -68.87 -0.16 2.34 16 15 H 0.04 0.85 7.85 -51.93 -0.41 0.44 16 16 C -0.09 -1.60 5.03 -104.47 -0.53 -2.13 16 17 C -0.08 -1.42 9.15 -39.61 -0.36 -1.78 16 18 C -0.13 -2.02 10.04 -39.56 -0.40 -2.41 16 19 C -0.12 -1.63 10.04 -39.60 -0.40 -2.03 16 20 C -0.15 -2.23 9.99 -39.43 -0.39 -2.63 16 21 C 0.10 1.62 6.67 -39.21 -0.26 1.36 16 22 O -0.50 -7.58 12.68 -19.42 -0.25 -7.83 16 23 N -0.68 -16.00 4.90 -102.20 -0.50 -16.50 16 24 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.04 0.65 7.67 -51.93 -0.40 0.25 16 31 H 0.14 2.77 7.11 -52.49 -0.37 2.40 16 32 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 33 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 34 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.38 4.01 8.65 45.56 0.39 4.41 16 36 H 0.36 9.53 6.25 -39.29 -0.25 9.28 16 LS Contribution 292.91 15.07 4.41 4.41 Total: -1.00 -29.23 292.91 -8.60 -37.83 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -4.38 Total: 11.52 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -3.50 Total: -20.85 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 0.14 Total: -41.25 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -0.25 Total: -7.83 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.23 -8.60 -37.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260256642.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.781 kcal (2) G-P(sol) polarization free energy of solvation -29.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds