Wall clock time and date at job start Mon Mar 30 2020 06:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86797 * 120.00160 * 2 1 4 4 H 1.48493 * 109.47252 * 269.99865 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.99685 * 3 2 1 6 6 H 1.48504 * 109.47308 * 149.99463 * 3 2 1 7 7 C 1.37877 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00015 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99774 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46097 * 60.02970 * 9 7 2 11 11 C 1.53038 * 109.46204 * 179.97438 * 9 7 2 12 12 C 1.53122 * 109.28074 * 179.18567 * 11 9 7 13 13 C 1.53115 * 109.16028 * 302.34973 * 12 11 9 14 14 C 1.53044 * 109.27784 * 57.65425 * 13 12 11 15 15 H 1.08992 * 109.46553 * 60.82331 * 14 13 12 16 16 C 1.50705 * 109.45883 * 180.80640 * 14 13 12 17 17 C 1.38166 * 120.02903 * 99.72403 * 16 14 13 18 18 C 1.38244 * 120.05257 * 180.29451 * 17 16 14 19 19 C 1.38289 * 120.11625 * 359.95507 * 18 17 16 20 20 C 1.38125 * 120.05375 * 0.04238 * 19 18 17 21 21 C 1.38715 * 120.02514 * 279.99318 * 16 14 13 22 22 O 1.35898 * 120.05243 * 359.70442 * 21 16 14 23 23 N 1.46840 * 109.45703 * 300.05068 * 9 7 2 24 24 H 0.97002 * 120.00321 * 0.02562 * 1 2 3 25 25 H 1.09010 * 109.49970 * 59.24734 * 11 9 7 26 26 H 1.09000 * 109.53996 * 299.15302 * 11 9 7 27 27 H 1.08993 * 109.52623 * 182.44233 * 12 11 9 28 28 H 1.08997 * 109.57018 * 62.28490 * 12 11 9 29 29 H 1.08996 * 109.50345 * 297.70967 * 13 12 11 30 30 H 1.08999 * 109.50312 * 177.58972 * 13 12 11 31 31 H 1.08001 * 119.97380 * 0.26819 * 17 16 14 32 32 H 1.08000 * 119.94010 * 179.97438 * 18 17 16 33 33 H 1.07992 * 119.97564 * 180.02562 * 19 18 17 34 34 H 1.07995 * 120.03167 * 179.97438 * 20 19 18 35 35 H 0.96704 * 113.99911 * 90.00299 * 22 21 16 36 36 H 1.00896 * 111.00212 * 54.14697 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4991 0.0017 10 1 0.6244 -2.5575 -0.8883 11 6 2.2456 -3.6622 0.0015 12 6 1.4759 -4.9857 0.0232 13 6 0.5685 -5.0192 1.2560 14 6 -0.3776 -3.8168 1.2198 15 1 -0.9968 -3.8686 0.3243 16 6 -1.2595 -3.8348 2.4418 17 6 -0.9585 -3.0297 3.5236 18 6 -1.7637 -3.0504 4.6471 19 6 -2.8724 -3.8757 4.6912 20 6 -3.1776 -4.6823 3.6123 21 6 -2.3709 -4.6638 2.4835 22 8 -2.6692 -5.4561 1.4205 23 7 0.4064 -2.5752 1.2005 24 1 -0.4851 0.8400 -0.0004 25 1 2.8821 -3.5968 0.8840 26 1 2.8621 -3.6144 -0.8961 27 1 2.1804 -5.8162 0.0668 28 1 0.8690 -5.0700 -0.8783 29 1 1.1785 -4.9752 2.1582 30 1 -0.0139 -5.9405 1.2543 31 1 -0.0933 -2.3841 3.4915 32 1 -1.5265 -2.4207 5.4919 33 1 -3.5001 -3.8897 5.5699 34 1 -4.0434 -5.3270 3.6472 35 1 -2.2605 -6.3319 1.4557 36 1 -0.1936 -1.7672 1.2721 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260256642.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:32 Heat of formation + Delta-G solvation = -49.392115 kcal Electronic energy + Delta-G solvation = -18258.157974 eV Core-core repulsion = 15512.617640 eV Total energy + Delta-G solvation = -2745.540333 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.02388 -38.94361 -37.47791 -35.00459 -33.52369 -31.98582 -30.82361 -29.80253 -27.16702 -24.81619 -23.52659 -23.12067 -21.82467 -20.26068 -19.22303 -18.49934 -17.33008 -16.73258 -16.59877 -16.11507 -15.91548 -14.98305 -14.92312 -14.75372 -14.48591 -14.13392 -14.00040 -13.72912 -13.06333 -12.96873 -12.81971 -12.67793 -12.46058 -12.21558 -12.05580 -11.75815 -11.59033 -11.46910 -10.90407 -10.84308 -10.63198 -9.69034 -9.41776 -8.78436 -8.16952 -6.29396 0.38158 0.49773 1.40695 1.41979 1.52821 2.41599 2.80171 3.07016 3.38714 3.72227 3.95549 4.12880 4.15970 4.24458 4.31875 4.40577 4.59161 4.61882 4.66894 4.82472 4.89730 5.05108 5.07028 5.15331 5.19461 5.26056 5.27389 5.37166 5.50181 5.59457 5.64235 5.76998 5.81109 6.04423 6.19887 6.65386 6.89245 7.00378 7.11984 7.42785 8.90909 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.023187 B = 0.007500 C = 0.006231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.290821 B = 3732.298102 C = 4492.909280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.018 3.982 3 Si 0.963 3.037 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.213 3.787 10 H -0.050 1.050 11 C -0.101 4.101 12 C -0.114 4.114 13 C -0.090 4.090 14 C 0.126 3.874 15 H 0.004 0.996 16 C -0.115 4.115 17 C -0.101 4.101 18 C -0.135 4.135 19 C -0.107 4.107 20 C -0.151 4.151 21 C 0.093 3.907 22 O -0.507 6.507 23 N -0.675 5.675 24 H 0.264 0.736 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.083 0.917 28 H 0.046 0.954 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.118 0.882 32 H 0.142 0.858 33 H 0.158 0.842 34 H 0.149 0.851 35 H 0.402 0.598 36 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.933 -10.846 8.284 14.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.181 4.181 3 Si 0.788 3.212 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.566 4.566 8 H 0.076 0.924 9 C 0.105 3.895 10 H -0.033 1.033 11 C -0.139 4.139 12 C -0.151 4.151 13 C -0.128 4.128 14 C 0.015 3.985 15 H 0.022 0.978 16 C -0.116 4.116 17 C -0.119 4.119 18 C -0.153 4.153 19 C -0.125 4.125 20 C -0.169 4.169 21 C 0.048 3.952 22 O -0.320 6.320 23 N -0.311 5.311 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.102 0.898 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.136 0.864 32 H 0.160 0.840 33 H 0.175 0.825 34 H 0.167 0.833 35 H 0.260 0.740 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.893 -10.507 8.476 14.050 hybrid contribution -0.066 1.034 -1.039 1.467 sum -3.959 -9.474 7.437 12.678 Atomic orbital electron populations 1.69816 1.07324 1.27675 1.51852 1.25801 0.95678 1.02660 0.93945 0.85488 0.78681 0.78930 0.78070 1.20285 1.20895 1.19187 1.21537 0.93241 0.91587 1.50187 0.92390 1.18949 0.90632 0.93611 0.86291 1.03279 1.21540 0.97777 0.94294 1.00310 1.21579 0.98536 0.97564 0.97465 1.21449 0.96918 0.95891 0.98491 1.20200 0.92348 0.93524 0.92400 0.97793 1.20408 0.95653 0.99027 0.96536 1.21134 1.00074 0.97809 0.92908 1.21465 0.95597 1.00049 0.98212 1.21350 0.96966 0.95239 0.98899 1.21594 1.00857 1.02151 0.92316 1.18481 0.93723 0.95129 0.87882 1.84770 1.74438 1.30128 1.42625 1.60863 1.25644 1.03306 1.41254 0.92694 0.92743 0.93044 0.89813 0.93494 0.91914 0.90348 0.86444 0.83991 0.82487 0.83340 0.73961 0.83168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.28 11.48 21.45 0.25 -54.03 16 2 C 0.02 1.00 5.32 84.66 0.45 1.45 16 3 Si 0.96 44.32 29.54 68.60 2.03 46.35 16 4 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 7 C -0.53 -29.80 8.76 25.60 0.22 -29.57 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 9 C 0.21 11.25 2.39 44.19 0.11 11.35 16 10 H -0.05 -3.02 8.14 -2.39 -0.02 -3.04 16 11 C -0.10 -4.35 5.31 30.65 0.16 -4.18 16 12 C -0.11 -3.98 6.00 30.67 0.18 -3.79 16 13 C -0.09 -3.07 5.35 30.65 0.16 -2.91 16 14 C 0.13 5.28 2.31 44.20 0.10 5.38 16 15 H 0.00 0.20 7.85 -2.39 -0.02 0.18 16 16 C -0.12 -4.30 5.03 -19.77 -0.10 -4.40 16 17 C -0.10 -3.65 9.15 22.25 0.20 -3.44 16 18 C -0.14 -3.81 10.04 22.28 0.22 -3.59 16 19 C -0.11 -2.54 10.04 22.25 0.22 -2.31 16 20 C -0.15 -3.88 9.99 22.37 0.22 -3.66 16 21 C 0.09 2.94 6.67 22.51 0.15 3.09 16 22 O -0.51 -14.79 12.68 -92.40 -1.17 -15.96 16 23 N -0.68 -33.59 4.90 -477.26 -2.34 -35.93 16 24 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 25 H 0.05 2.34 8.14 -2.38 -0.02 2.32 16 26 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.08 2.14 7.67 -2.39 -0.02 2.12 16 31 H 0.12 4.78 7.11 -2.91 -0.02 4.76 16 32 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 33 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 34 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 35 H 0.40 7.58 8.65 -74.05 -0.64 6.94 16 36 H 0.35 19.23 6.25 -89.70 -0.56 18.67 16 Total: -1.00 -66.17 292.91 0.96 -65.20 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: -0.12 Total: 30.95 kcal Atomic # 6 Polarization: -38.90 SS G_CDS: 2.32 Total: -36.58 kcal Atomic # 7 Polarization: -87.87 SS G_CDS: -2.09 Total: -89.96 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -1.17 Total: -15.96 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -66.17 0.96 -65.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260256642.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.813 kcal (2) G-P(sol) polarization free energy of solvation -66.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds