Wall clock time and date at job start Mon Mar 30 2020 06:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00207 * 2 1 4 4 H 1.48500 * 109.47403 * 239.99796 * 3 2 1 5 5 H 1.48501 * 109.47469 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47250 * 120.00046 * 3 2 1 7 7 C 1.37877 * 119.99916 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99859 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99970 * 359.97438 * 7 2 1 10 10 H 1.09008 * 109.45657 * 60.02350 * 9 7 2 11 11 C 1.53034 * 109.46217 * 179.97438 * 9 7 2 12 12 C 1.53118 * 109.27706 * 60.82880 * 11 9 7 13 13 C 1.53125 * 109.16232 * 57.65152 * 12 11 9 14 14 C 1.53038 * 109.27776 * 302.34823 * 13 12 11 15 15 H 1.08998 * 109.46034 * 299.17108 * 14 13 12 16 16 C 1.50693 * 109.46415 * 179.19185 * 14 13 12 17 17 C 1.38168 * 120.03231 * 265.02066 * 16 14 13 18 18 C 1.38237 * 120.05874 * 179.97438 * 17 16 14 19 19 C 1.38291 * 120.11396 * 359.68307 * 18 17 16 20 20 C 1.38125 * 120.05217 * 0.60010 * 19 18 17 21 21 C 1.38710 * 120.03005 * 84.99891 * 16 14 13 22 22 O 1.35905 * 120.05218 * 0.04371 * 21 16 14 23 23 N 1.46845 * 109.45487 * 300.05111 * 9 7 2 24 24 H 0.97001 * 119.99582 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.50757 * 300.88745 * 11 9 7 26 26 H 1.09001 * 109.53629 * 180.78301 * 11 9 7 27 27 H 1.09003 * 109.52403 * 297.74943 * 12 11 9 28 28 H 1.08998 * 109.57908 * 177.58598 * 12 11 9 29 29 H 1.08995 * 109.50725 * 182.40606 * 13 12 11 30 30 H 1.09002 * 109.53567 * 62.30132 * 13 12 11 31 31 H 1.08006 * 119.96904 * 359.97438 * 17 16 14 32 32 H 1.08001 * 119.94643 * 179.97438 * 18 17 16 33 33 H 1.08004 * 119.97772 * 180.29464 * 19 18 17 34 34 H 1.08002 * 120.03152 * 179.70250 * 20 19 18 35 35 H 0.96695 * 113.99923 * 269.97824 * 22 21 16 36 36 H 1.00895 * 110.99946 * 177.63596 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6243 -2.5566 -0.8906 11 6 2.2456 -3.6622 -0.0018 12 6 3.1105 -3.5891 1.2596 13 6 2.2040 -3.6228 2.4932 14 6 1.2106 -2.4608 2.4221 15 1 1.7558 -1.5171 2.4104 16 6 0.3032 -2.5016 3.6245 17 6 -0.9267 -3.1258 3.5419 18 6 -1.7592 -3.1640 4.6448 19 6 -1.3610 -2.5837 5.8352 20 6 -0.1350 -1.9534 5.9213 21 6 0.7022 -1.9130 4.8155 22 8 1.9112 -1.2980 4.8992 23 7 0.4064 -2.5763 1.1983 24 1 -0.4849 0.8401 0.0004 25 1 2.8823 -3.5957 -0.8840 26 1 1.7018 -4.6068 -0.0159 27 1 3.6844 -2.6624 1.2545 28 1 3.7919 -4.4394 1.2850 29 1 2.8110 -3.5280 3.3935 30 1 1.6590 -4.5664 2.5194 31 1 -1.2378 -3.5843 2.6148 32 1 -2.7204 -3.6521 4.5781 33 1 -2.0112 -2.6190 6.6969 34 1 0.1737 -1.4961 6.8498 35 1 2.6309 -1.8814 5.1762 36 1 -0.1386 -3.4254 1.2026 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260256645.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:35 Heat of formation + Delta-G solvation = -19.569641 kcal Electronic energy + Delta-G solvation = -18605.157460 eV Core-core repulsion = 15860.910326 eV Total energy + Delta-G solvation = -2744.247134 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.69450 -37.57220 -36.19385 -32.64057 -31.80472 -30.16298 -29.52203 -28.20066 -25.21161 -23.28216 -22.12211 -21.57088 -20.30649 -18.97828 -17.90220 -16.04605 -15.98020 -15.14845 -14.81621 -14.51081 -14.25841 -13.64943 -13.49486 -13.28158 -12.94681 -12.36067 -11.99116 -11.91329 -11.72258 -11.42832 -11.18242 -10.79672 -10.74080 -10.59730 -10.29860 -10.18551 -10.11596 -9.51587 -9.41059 -8.80756 -8.40554 -8.26883 -8.09901 -6.73347 -5.78761 -3.90188 1.65939 1.78196 3.40931 3.45969 3.48425 4.06223 4.55849 4.62224 5.18302 5.26740 5.36712 5.39816 5.60721 5.69943 5.74596 5.82332 6.00427 6.13860 6.22743 6.25890 6.36524 6.37605 6.48846 6.58905 6.73430 6.80867 6.87906 6.92084 7.01913 7.10060 7.22912 7.34033 7.66824 7.96822 8.06754 8.27155 8.64189 8.92588 9.24611 9.76440 11.25932 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.020385 B = 0.009064 C = 0.007962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.211363 B = 3088.360026 C = 3515.935085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.085 3.915 3 Si 0.875 3.125 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.531 4.531 8 H 0.052 0.948 9 C 0.218 3.782 10 H 0.040 0.960 11 C -0.146 4.146 12 C -0.106 4.106 13 C -0.137 4.137 14 C 0.140 3.860 15 H 0.109 0.891 16 C -0.072 4.072 17 C -0.090 4.090 18 C -0.132 4.132 19 C -0.124 4.124 20 C -0.151 4.151 21 C 0.100 3.900 22 O -0.492 6.492 23 N -0.639 5.639 24 H 0.254 0.746 25 H 0.052 0.948 26 H 0.031 0.969 27 H 0.071 0.929 28 H 0.036 0.964 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.128 0.872 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.381 0.619 36 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.368 -7.724 9.396 12.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.122 4.122 3 Si 0.703 3.297 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.569 4.569 8 H 0.071 0.929 9 C 0.111 3.889 10 H 0.058 0.942 11 C -0.185 4.185 12 C -0.143 4.143 13 C -0.176 4.176 14 C 0.029 3.971 15 H 0.127 0.873 16 C -0.073 4.073 17 C -0.108 4.108 18 C -0.150 4.150 19 C -0.142 4.142 20 C -0.170 4.170 21 C 0.056 3.944 22 O -0.301 6.301 23 N -0.267 5.267 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.050 0.950 27 H 0.089 0.911 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.146 0.854 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.236 0.764 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.311 -6.424 9.170 11.200 hybrid contribution 1.162 -0.245 0.291 1.223 sum 0.851 -6.669 9.461 11.606 Atomic orbital electron populations 1.70065 1.05573 1.25568 1.46806 1.24912 0.94557 0.98298 0.94432 0.86966 0.79941 0.84405 0.78420 1.20540 1.21479 1.20297 1.20827 0.92066 0.90061 1.53968 0.92950 1.19144 0.89085 0.91683 0.89026 0.94168 1.22309 0.99864 0.99456 0.96901 1.21416 0.97365 1.00720 0.94838 1.22186 0.98734 0.99023 0.97704 1.20222 0.90863 0.98917 0.87056 0.87321 1.20567 0.96437 0.95144 0.95176 1.20964 0.93205 0.98528 0.98135 1.21105 0.99610 1.01029 0.93290 1.20850 0.96111 0.99352 0.97876 1.21277 0.95907 1.01710 0.98073 1.18344 0.87475 0.95944 0.92670 1.84863 1.16233 1.38212 1.90757 1.61020 1.25813 1.38844 1.01012 0.93569 0.92924 0.95036 0.91080 0.94554 0.93630 0.93625 0.85402 0.86470 0.86517 0.86240 0.76446 0.88842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.68 12.77 55.43 0.71 -23.98 16 2 C 0.08 2.37 5.39 -17.82 -0.10 2.27 16 3 Si 0.87 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.53 -14.24 6.47 -34.44 -0.22 -14.46 16 8 H 0.05 1.40 6.76 -52.48 -0.35 1.05 16 9 C 0.22 5.27 2.95 -68.88 -0.20 5.07 16 10 H 0.04 1.07 8.14 -51.92 -0.42 0.65 16 11 C -0.15 -2.96 5.56 -26.65 -0.15 -3.10 16 12 C -0.11 -1.98 5.75 -26.61 -0.15 -2.13 16 13 C -0.14 -2.44 5.34 -26.65 -0.14 -2.58 16 14 C 0.14 2.92 2.13 -68.85 -0.15 2.78 16 15 H 0.11 2.73 6.53 -51.93 -0.34 2.39 16 16 C -0.07 -1.37 5.07 -104.48 -0.53 -1.90 16 17 C -0.09 -1.56 9.26 -39.61 -0.37 -1.93 16 18 C -0.13 -1.97 10.04 -39.56 -0.40 -2.37 16 19 C -0.12 -1.75 10.04 -39.60 -0.40 -2.15 16 20 C -0.15 -2.32 9.99 -39.43 -0.39 -2.71 16 21 C 0.10 1.78 6.68 -39.22 -0.26 1.51 16 22 O -0.49 -8.37 12.64 -19.44 -0.25 -8.61 16 23 N -0.64 -14.57 5.26 -102.17 -0.54 -15.11 16 24 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 25 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 1.45 6.73 -51.93 -0.35 1.10 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.13 2.17 6.23 -52.48 -0.33 1.84 16 32 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 34 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.38 4.53 9.06 45.56 0.41 4.94 16 36 H 0.29 6.09 6.89 -39.29 -0.27 5.82 16 LS Contribution 289.74 15.07 4.37 4.37 Total: -1.00 -30.37 289.74 -8.36 -38.72 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -4.17 Total: 9.59 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: -3.46 Total: -21.70 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.17 Total: -39.08 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -0.25 Total: -8.61 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.37 -8.36 -38.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260256645.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.154 kcal (2) G-P(sol) polarization free energy of solvation -30.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds