Wall clock time and date at job start Mon Mar 30 2020 06:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00207 * 2 1 4 4 H 1.48500 * 109.47403 * 239.99796 * 3 2 1 5 5 H 1.48501 * 109.47469 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47250 * 120.00046 * 3 2 1 7 7 C 1.37877 * 119.99916 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99859 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99970 * 359.97438 * 7 2 1 10 10 H 1.09008 * 109.45657 * 60.02350 * 9 7 2 11 11 C 1.53034 * 109.46217 * 179.97438 * 9 7 2 12 12 C 1.53118 * 109.27706 * 60.82880 * 11 9 7 13 13 C 1.53125 * 109.16232 * 57.65152 * 12 11 9 14 14 C 1.53038 * 109.27776 * 302.34823 * 13 12 11 15 15 H 1.08998 * 109.46034 * 299.17108 * 14 13 12 16 16 C 1.50693 * 109.46415 * 179.19185 * 14 13 12 17 17 C 1.38168 * 120.03231 * 265.02066 * 16 14 13 18 18 C 1.38237 * 120.05874 * 179.97438 * 17 16 14 19 19 C 1.38291 * 120.11396 * 359.68307 * 18 17 16 20 20 C 1.38125 * 120.05217 * 0.60010 * 19 18 17 21 21 C 1.38710 * 120.03005 * 84.99891 * 16 14 13 22 22 O 1.35905 * 120.05218 * 0.04371 * 21 16 14 23 23 N 1.46845 * 109.45487 * 300.05111 * 9 7 2 24 24 H 0.97001 * 119.99582 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.50757 * 300.88745 * 11 9 7 26 26 H 1.09001 * 109.53629 * 180.78301 * 11 9 7 27 27 H 1.09003 * 109.52403 * 297.74943 * 12 11 9 28 28 H 1.08998 * 109.57908 * 177.58598 * 12 11 9 29 29 H 1.08995 * 109.50725 * 182.40606 * 13 12 11 30 30 H 1.09002 * 109.53567 * 62.30132 * 13 12 11 31 31 H 1.08006 * 119.96904 * 359.97438 * 17 16 14 32 32 H 1.08001 * 119.94643 * 179.97438 * 18 17 16 33 33 H 1.08004 * 119.97772 * 180.29464 * 19 18 17 34 34 H 1.08002 * 120.03152 * 179.70250 * 20 19 18 35 35 H 0.96695 * 113.99923 * 269.97824 * 22 21 16 36 36 H 1.00895 * 110.99946 * 177.63596 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6243 -2.5566 -0.8906 11 6 2.2456 -3.6622 -0.0018 12 6 3.1105 -3.5891 1.2596 13 6 2.2040 -3.6228 2.4932 14 6 1.2106 -2.4608 2.4221 15 1 1.7558 -1.5171 2.4104 16 6 0.3032 -2.5016 3.6245 17 6 -0.9267 -3.1258 3.5419 18 6 -1.7592 -3.1640 4.6448 19 6 -1.3610 -2.5837 5.8352 20 6 -0.1350 -1.9534 5.9213 21 6 0.7022 -1.9130 4.8155 22 8 1.9112 -1.2980 4.8992 23 7 0.4064 -2.5763 1.1983 24 1 -0.4849 0.8401 0.0004 25 1 2.8823 -3.5957 -0.8840 26 1 1.7018 -4.6068 -0.0159 27 1 3.6844 -2.6624 1.2545 28 1 3.7919 -4.4394 1.2850 29 1 2.8110 -3.5280 3.3935 30 1 1.6590 -4.5664 2.5194 31 1 -1.2378 -3.5843 2.6148 32 1 -2.7204 -3.6521 4.5781 33 1 -2.0112 -2.6190 6.6969 34 1 0.1737 -1.4961 6.8498 35 1 2.6309 -1.8814 5.1762 36 1 -0.1386 -3.4254 1.2026 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260256645.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:34 Heat of formation + Delta-G solvation = -40.242299 kcal Electronic energy + Delta-G solvation = -18606.053893 eV Core-core repulsion = 15860.910326 eV Total energy + Delta-G solvation = -2745.143568 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.04117 -39.15426 -37.44017 -34.56668 -33.36989 -31.91284 -30.76813 -29.65236 -27.22369 -24.74974 -23.53806 -23.07845 -21.74463 -20.74993 -19.17651 -17.96767 -17.36350 -16.65115 -16.41486 -16.12728 -15.69949 -15.24035 -14.84664 -14.74481 -14.67405 -13.98094 -13.68507 -13.41898 -13.07820 -12.80919 -12.73664 -12.70812 -12.47929 -12.32429 -11.97242 -11.80154 -11.52213 -11.38794 -10.92389 -10.79182 -10.38732 -9.64565 -9.37522 -8.45357 -7.92386 -6.07861 0.44182 0.54618 1.39380 1.41993 1.46549 2.47760 2.85133 3.30190 3.43654 3.79307 4.01373 4.12272 4.22028 4.25736 4.30696 4.47997 4.63341 4.71028 4.73577 4.84146 4.94219 5.05410 5.08231 5.10141 5.28122 5.32064 5.39121 5.52962 5.57379 5.62597 5.69565 5.85235 5.88201 6.07932 6.26235 6.74234 6.94604 7.02853 7.37007 7.60886 9.10415 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.020385 B = 0.009064 C = 0.007962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.211363 B = 3088.360026 C = 3515.935085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.037 3.963 3 Si 0.928 3.072 4 H -0.270 1.270 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.531 4.531 8 H 0.048 0.952 9 C 0.215 3.785 10 H 0.006 0.994 11 C -0.139 4.139 12 C -0.102 4.102 13 C -0.128 4.128 14 C 0.151 3.849 15 H 0.059 0.941 16 C -0.103 4.103 17 C -0.105 4.105 18 C -0.131 4.131 19 C -0.114 4.114 20 C -0.153 4.153 21 C 0.084 3.916 22 O -0.510 6.510 23 N -0.656 5.656 24 H 0.249 0.751 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.123 0.877 32 H 0.147 0.853 33 H 0.155 0.845 34 H 0.142 0.858 35 H 0.400 0.600 36 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.343 -8.800 11.351 14.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.166 4.166 3 Si 0.755 3.245 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.570 4.570 8 H 0.066 0.934 9 C 0.107 3.893 10 H 0.023 0.977 11 C -0.179 4.179 12 C -0.140 4.140 13 C -0.168 4.168 14 C 0.040 3.960 15 H 0.077 0.923 16 C -0.104 4.104 17 C -0.124 4.124 18 C -0.149 4.149 19 C -0.132 4.132 20 C -0.172 4.172 21 C 0.040 3.960 22 O -0.322 6.322 23 N -0.285 5.285 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.141 0.859 32 H 0.164 0.836 33 H 0.172 0.828 34 H 0.160 0.840 35 H 0.257 0.743 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.306 -7.513 11.127 13.429 hybrid contribution 1.155 0.055 -0.273 1.188 sum 0.848 -7.459 10.854 13.197 Atomic orbital electron populations 1.70197 1.06733 1.25682 1.48716 1.25536 0.95237 1.01137 0.94663 0.86111 0.78812 0.81143 0.78448 1.19532 1.21608 1.20510 1.21128 0.91999 0.91425 1.52419 0.93426 1.18981 0.89403 0.92316 0.88576 0.97657 1.22170 0.99275 0.98561 0.97868 1.21381 0.97450 1.00866 0.94291 1.22085 0.98213 0.98312 0.98168 1.19908 0.91317 0.97654 0.87097 0.92294 1.20525 0.97224 0.97673 0.95015 1.21048 0.93227 0.99042 0.99061 1.21446 1.00233 1.00569 0.92664 1.21308 0.95815 0.97350 0.98707 1.21577 0.95945 1.01486 0.98141 1.18565 0.88124 0.96213 0.93125 1.84806 1.16984 1.39373 1.91007 1.60740 1.26524 1.39901 1.01305 0.94157 0.93159 0.93061 0.93380 0.91396 0.91525 0.92180 0.85930 0.83571 0.82754 0.83974 0.74294 0.87588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -52.85 12.77 21.45 0.27 -52.58 16 2 C 0.04 2.15 5.39 84.65 0.46 2.60 16 3 Si 0.93 45.70 29.54 68.60 2.03 47.73 16 4 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 5 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 6 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 7 C -0.53 -29.30 6.47 25.60 0.17 -29.14 16 8 H 0.05 2.61 6.76 -2.91 -0.02 2.59 16 9 C 0.22 10.69 2.95 44.19 0.13 10.82 16 10 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 11 C -0.14 -5.58 5.56 30.65 0.17 -5.41 16 12 C -0.10 -3.70 5.75 30.68 0.18 -3.53 16 13 C -0.13 -4.42 5.34 30.65 0.16 -4.26 16 14 C 0.15 6.36 2.13 44.18 0.09 6.46 16 15 H 0.06 3.07 6.53 -2.39 -0.02 3.05 16 16 C -0.10 -3.90 5.07 -19.77 -0.10 -4.00 16 17 C -0.11 -3.55 9.26 22.25 0.21 -3.35 16 18 C -0.13 -3.54 10.04 22.28 0.22 -3.32 16 19 C -0.11 -2.80 10.04 22.26 0.22 -2.58 16 20 C -0.15 -4.28 9.99 22.37 0.22 -4.06 16 21 C 0.08 2.90 6.68 22.51 0.15 3.05 16 22 O -0.51 -17.12 12.64 -92.48 -1.17 -18.29 16 23 N -0.66 -30.57 5.26 -477.17 -2.51 -33.08 16 24 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 25 H 0.05 2.00 8.14 -2.39 -0.02 1.99 16 26 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.05 1.95 6.73 -2.39 -0.02 1.93 16 28 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.12 4.12 6.23 -2.91 -0.02 4.11 16 32 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 33 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 34 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 35 H 0.40 9.17 9.06 -74.06 -0.67 8.50 16 36 H 0.31 12.86 6.89 -89.70 -0.62 12.24 16 Total: -1.00 -67.10 289.74 0.71 -66.39 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: -0.20 Total: 26.53 kcal Atomic # 6 Polarization: -38.98 SS G_CDS: 2.28 Total: -36.70 kcal Atomic # 7 Polarization: -83.42 SS G_CDS: -2.24 Total: -85.66 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -1.17 Total: -18.29 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -67.10 0.71 -66.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260256645.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.152 kcal (2) G-P(sol) polarization free energy of solvation -67.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds