Wall clock time and date at job start Mon Mar 30 2020 06:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99948 * 2 1 4 4 H 1.48500 * 109.47190 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46886 * 120.00083 * 3 2 1 6 6 H 1.48500 * 109.46868 * 239.99697 * 3 2 1 7 7 C 1.37877 * 120.00044 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99607 * 343.73241 * 7 2 1 9 9 C 1.50693 * 120.00189 * 163.73444 * 7 2 1 10 10 H 1.08999 * 109.47373 * 54.51358 * 9 7 2 11 11 N 1.46904 * 109.47172 * 294.51635 * 9 7 2 12 12 C 1.50697 * 109.47357 * 174.51516 * 9 7 2 13 13 C 1.38256 * 120.00108 * 99.99739 * 12 9 7 14 14 C 1.38218 * 120.00006 * 180.02562 * 13 12 9 15 15 C 1.38252 * 119.99829 * 359.95704 * 14 13 12 16 16 C 1.38215 * 120.00357 * 359.97438 * 15 14 13 17 17 C 1.38220 * 120.00153 * 279.72459 * 12 9 7 18 18 C 1.50700 * 119.99730 * 359.97438 * 17 12 9 19 19 H 1.09002 * 110.75046 * 2.01373 * 18 17 12 20 20 C 1.55306 * 110.84941 * 125.71179 * 18 17 12 21 21 C 1.54940 * 100.94023 * 152.32038 * 20 18 17 22 22 O 1.43645 * 105.14021 * 323.55904 * 21 20 18 23 23 C 1.43233 * 109.96974 * 24.42531 * 22 21 20 24 24 H 0.96998 * 120.00128 * 181.25793 * 1 2 3 25 25 H 1.00904 * 110.99471 * 306.15946 * 11 9 7 26 26 H 1.00901 * 110.99943 * 70.10831 * 11 9 7 27 27 H 1.07998 * 120.00037 * 359.97438 * 13 12 9 28 28 H 1.08005 * 119.99847 * 179.97438 * 14 13 12 29 29 H 1.08008 * 119.99723 * 180.02562 * 15 14 13 30 30 H 1.07995 * 119.99868 * 180.02562 * 16 15 14 31 31 H 1.09002 * 111.12198 * 270.24099 * 20 18 17 32 32 H 1.08998 * 111.12194 * 34.40569 * 20 18 17 33 33 H 1.09000 * 110.31132 * 204.63696 * 21 20 18 34 34 H 1.09007 * 110.30930 * 82.47533 * 21 20 18 35 35 H 1.09000 * 109.82875 * 238.77725 * 23 22 21 36 36 H 1.08998 * 109.83083 * 117.80407 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 1.4969 -2.1105 0.2630 9 6 3.4663 -1.2204 -0.3650 10 1 4.0114 -0.5186 0.2663 11 7 3.6256 -0.8370 -1.7741 12 6 4.0110 -2.6101 -0.1578 13 6 4.1654 -3.4601 -1.2372 14 6 4.6645 -4.7349 -1.0470 15 6 5.0102 -5.1597 0.2224 16 6 4.8571 -4.3095 1.3013 17 6 4.3615 -3.0330 1.1106 18 6 4.1995 -2.1041 2.2862 19 1 3.7632 -1.1560 1.9719 20 6 3.3464 -2.7676 3.4014 21 6 3.8984 -2.0512 4.6594 22 8 5.3026 -1.8815 4.4087 23 6 5.5506 -1.8780 2.9980 24 1 -0.4850 -0.8398 0.0184 25 1 3.0497 -1.4105 -2.3722 26 1 3.4226 0.1423 -1.9076 27 1 3.8952 -3.1283 -2.2288 28 1 4.7847 -5.3991 -1.8902 29 1 5.4006 -6.1557 0.3709 30 1 5.1276 -4.6412 2.2928 31 1 2.2860 -2.5567 3.2627 32 1 3.5286 -3.8412 3.4491 33 1 3.7440 -2.6683 5.5446 34 1 3.4165 -1.0815 4.7847 35 1 6.2422 -2.6808 2.7422 36 1 5.9701 -0.9176 2.6986 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260257346.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:03 Heat of formation + Delta-G solvation = -27.526604 kcal Electronic energy + Delta-G solvation = -18441.085370 eV Core-core repulsion = 15696.493197 eV Total energy + Delta-G solvation = -2744.592174 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.82369 -38.15190 -34.93608 -33.00330 -31.99871 -29.85320 -29.54539 -28.00648 -25.92606 -22.85413 -22.75093 -21.96512 -20.01369 -19.46111 -17.79855 -16.75411 -16.11770 -15.56512 -14.93147 -14.51743 -14.31721 -13.84044 -13.78852 -13.13803 -12.94873 -12.68948 -12.46542 -12.36744 -12.00994 -11.79030 -11.38635 -11.16343 -10.95300 -10.68068 -10.58054 -10.25475 -10.16736 -9.83562 -9.35442 -9.27754 -8.58825 -8.18732 -8.03797 -7.60019 -6.56425 -4.31078 1.90920 2.05393 3.18846 3.28416 3.44059 4.13654 4.27866 4.33416 4.97045 5.07225 5.09281 5.30605 5.40476 5.45245 5.51523 5.54754 5.60770 5.72199 5.90684 5.97603 6.04790 6.09279 6.20707 6.24890 6.33975 6.49129 6.60137 6.65493 6.85338 7.02473 7.10690 7.20753 7.44971 7.59603 7.74484 8.14563 8.32307 8.44392 8.75548 9.40456 10.72999 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.016702 B = 0.010831 C = 0.007696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.013559 B = 2584.619028 C = 3637.598401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.033 3.967 3 Si 1.040 2.960 4 H -0.283 1.283 5 H -0.280 1.280 6 H -0.274 1.274 7 C -0.621 4.621 8 H 0.057 0.943 9 C 0.210 3.790 10 H 0.044 0.956 11 N -0.859 5.859 12 C -0.016 4.016 13 C -0.110 4.110 14 C -0.128 4.128 15 C -0.145 4.145 16 C -0.120 4.120 17 C -0.076 4.076 18 C -0.081 4.081 19 H 0.111 0.889 20 C -0.143 4.143 21 C 0.050 3.950 22 O -0.390 6.390 23 C 0.057 3.943 24 H 0.270 0.730 25 H 0.328 0.672 26 H 0.329 0.671 27 H 0.122 0.878 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.260 -5.448 3.158 10.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.174 4.174 3 Si 0.868 3.132 4 H -0.208 1.208 5 H -0.207 1.207 6 H -0.201 1.201 7 C -0.661 4.661 8 H 0.076 0.924 9 C 0.100 3.900 10 H 0.061 0.939 11 N -0.390 5.390 12 C -0.016 4.016 13 C -0.128 4.128 14 C -0.146 4.146 15 C -0.163 4.163 16 C -0.138 4.138 17 C -0.077 4.077 18 C -0.099 4.099 19 H 0.129 0.871 20 C -0.181 4.181 21 C -0.026 4.026 22 O -0.310 6.310 23 C -0.020 4.020 24 H 0.080 0.920 25 H 0.140 0.860 26 H 0.143 0.857 27 H 0.140 0.860 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.974 -3.969 3.405 10.387 hybrid contribution -1.169 -1.595 -0.123 1.981 sum 7.806 -5.565 3.282 10.132 Atomic orbital electron populations 1.70846 1.06930 1.30663 1.44449 1.25785 0.96245 1.02260 0.93081 0.84053 0.75447 0.76229 0.77428 1.20820 1.20653 1.20076 1.22507 0.94175 0.96345 1.53031 0.92437 1.18308 0.95228 0.89130 0.87312 0.93875 1.59755 1.62355 1.08480 1.08417 1.20010 0.92890 0.97100 0.91619 1.20971 0.99551 0.93054 0.99272 1.21051 1.00571 0.96343 0.96656 1.20856 1.03205 0.99192 0.93074 1.20816 1.00975 0.93766 0.98261 1.19289 1.00483 0.94214 0.93701 1.21717 0.94741 1.00307 0.93162 0.87061 1.23295 1.01382 1.00043 0.93331 1.23381 0.81609 0.99659 0.97935 1.88327 1.24529 1.94758 1.23381 1.23294 0.97050 1.01337 0.80287 0.91989 0.85983 0.85659 0.85977 0.87126 0.87189 0.86995 0.89388 0.90741 0.90175 0.92091 0.91294 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.95 13.70 55.43 0.76 -25.19 16 2 C 0.03 0.89 5.44 -17.82 -0.10 0.79 16 3 Si 1.04 23.51 26.54 -169.99 -4.51 19.00 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.65 5.53 56.52 0.31 -5.34 16 7 C -0.62 -16.08 8.32 -34.44 -0.29 -16.37 16 8 H 0.06 1.66 7.99 -52.49 -0.42 1.25 16 9 C 0.21 4.72 1.79 -70.02 -0.13 4.60 16 10 H 0.04 1.00 5.41 -51.93 -0.28 0.72 16 11 N -0.86 -18.14 8.50 -6.65 -0.06 -18.19 16 12 C -0.02 -0.32 5.03 -104.62 -0.53 -0.85 16 13 C -0.11 -2.10 9.27 -39.58 -0.37 -2.46 16 14 C -0.13 -2.11 10.05 -39.58 -0.40 -2.51 16 15 C -0.15 -2.29 10.05 -39.58 -0.40 -2.68 16 16 C -0.12 -2.00 8.12 -39.59 -0.32 -2.32 16 17 C -0.08 -1.44 4.93 -104.62 -0.52 -1.96 16 18 C -0.08 -1.46 2.86 -89.83 -0.26 -1.72 16 19 H 0.11 2.31 5.45 -51.93 -0.28 2.02 16 20 C -0.14 -2.32 6.54 -24.48 -0.16 -2.48 16 21 C 0.05 0.75 7.78 38.18 0.30 1.04 16 22 O -0.39 -6.50 11.36 -35.23 -0.40 -6.90 16 23 C 0.06 0.93 7.31 37.88 0.28 1.20 16 24 H 0.27 7.87 8.72 -40.82 -0.36 7.52 16 25 H 0.33 6.79 7.60 -39.29 -0.30 6.49 16 26 H 0.33 6.97 5.67 -39.29 -0.22 6.75 16 27 H 0.12 2.25 6.41 -52.49 -0.34 1.91 16 28 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 29 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 30 H 0.11 1.65 7.30 -52.49 -0.38 1.27 16 31 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.07 1.12 6.81 -51.93 -0.35 0.77 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 1.06 7.05 -51.93 -0.37 0.70 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 284.42 15.07 4.29 4.29 Total: -1.00 -28.11 284.42 -7.52 -35.63 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: -4.72 Total: 17.08 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: -2.88 Total: -25.71 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: 0.70 Total: -43.38 kcal Atomic # 8 Polarization: -6.50 SS G_CDS: -0.40 Total: -6.90 kcal Atomic # 14 Polarization: 23.51 SS G_CDS: -4.51 Total: 19.00 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.11 -7.52 -35.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260257346.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.105 kcal (2) G-P(sol) polarization free energy of solvation -28.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds