Wall clock time and date at job start Mon Mar 30 2020 06:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99948 * 2 1 4 4 H 1.48500 * 109.47190 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46886 * 120.00083 * 3 2 1 6 6 H 1.48500 * 109.46868 * 239.99697 * 3 2 1 7 7 C 1.37877 * 120.00044 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99607 * 343.73241 * 7 2 1 9 9 C 1.50693 * 120.00189 * 163.73444 * 7 2 1 10 10 H 1.08999 * 109.47373 * 54.51358 * 9 7 2 11 11 N 1.46904 * 109.47172 * 294.51635 * 9 7 2 12 12 C 1.50697 * 109.47357 * 174.51516 * 9 7 2 13 13 C 1.38256 * 120.00108 * 99.99739 * 12 9 7 14 14 C 1.38218 * 120.00006 * 180.02562 * 13 12 9 15 15 C 1.38252 * 119.99829 * 359.95704 * 14 13 12 16 16 C 1.38215 * 120.00357 * 359.97438 * 15 14 13 17 17 C 1.38220 * 120.00153 * 279.72459 * 12 9 7 18 18 C 1.50700 * 119.99730 * 359.97438 * 17 12 9 19 19 H 1.09002 * 110.75046 * 2.01373 * 18 17 12 20 20 C 1.55306 * 110.84941 * 125.71179 * 18 17 12 21 21 C 1.54940 * 100.94023 * 152.32038 * 20 18 17 22 22 O 1.43645 * 105.14021 * 323.55904 * 21 20 18 23 23 C 1.43233 * 109.96974 * 24.42531 * 22 21 20 24 24 H 0.96998 * 120.00128 * 181.25793 * 1 2 3 25 25 H 1.00904 * 110.99471 * 306.15946 * 11 9 7 26 26 H 1.00901 * 110.99943 * 70.10831 * 11 9 7 27 27 H 1.07998 * 120.00037 * 359.97438 * 13 12 9 28 28 H 1.08005 * 119.99847 * 179.97438 * 14 13 12 29 29 H 1.08008 * 119.99723 * 180.02562 * 15 14 13 30 30 H 1.07995 * 119.99868 * 180.02562 * 16 15 14 31 31 H 1.09002 * 111.12198 * 270.24099 * 20 18 17 32 32 H 1.08998 * 111.12194 * 34.40569 * 20 18 17 33 33 H 1.09000 * 110.31132 * 204.63696 * 21 20 18 34 34 H 1.09007 * 110.30930 * 82.47533 * 21 20 18 35 35 H 1.09000 * 109.82875 * 238.77725 * 23 22 21 36 36 H 1.08998 * 109.83083 * 117.80407 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 1.4969 -2.1105 0.2630 9 6 3.4663 -1.2204 -0.3650 10 1 4.0114 -0.5186 0.2663 11 7 3.6256 -0.8370 -1.7741 12 6 4.0110 -2.6101 -0.1578 13 6 4.1654 -3.4601 -1.2372 14 6 4.6645 -4.7349 -1.0470 15 6 5.0102 -5.1597 0.2224 16 6 4.8571 -4.3095 1.3013 17 6 4.3615 -3.0330 1.1106 18 6 4.1995 -2.1041 2.2862 19 1 3.7632 -1.1560 1.9719 20 6 3.3464 -2.7676 3.4014 21 6 3.8984 -2.0512 4.6594 22 8 5.3026 -1.8815 4.4087 23 6 5.5506 -1.8780 2.9980 24 1 -0.4850 -0.8398 0.0184 25 1 3.0497 -1.4105 -2.3722 26 1 3.4226 0.1423 -1.9076 27 1 3.8952 -3.1283 -2.2288 28 1 4.7847 -5.3991 -1.8902 29 1 5.4006 -6.1557 0.3709 30 1 5.1276 -4.6412 2.2928 31 1 2.2860 -2.5567 3.2627 32 1 3.5286 -3.8412 3.4491 33 1 3.7440 -2.6683 5.5446 34 1 3.4165 -1.0815 4.7847 35 1 6.2422 -2.6808 2.7422 36 1 5.9701 -0.9176 2.6986 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260257346.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:03 Heat of formation + Delta-G solvation = -46.263176 kcal Electronic energy + Delta-G solvation = -18441.897849 eV Core-core repulsion = 15696.493197 eV Total energy + Delta-G solvation = -2745.404652 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.18810 -39.49624 -36.69047 -34.35333 -33.99023 -31.15966 -31.01671 -29.33535 -27.80447 -24.43997 -24.19020 -23.24899 -21.51285 -20.93026 -19.83936 -18.17700 -17.44854 -17.02698 -16.33648 -15.87296 -15.75099 -15.61010 -15.19787 -14.88956 -14.31689 -14.20423 -14.13178 -13.95005 -13.48976 -13.29789 -12.87475 -12.50553 -12.32882 -12.26233 -12.04698 -11.99988 -11.56490 -11.46591 -11.20315 -10.66337 -10.54516 -9.61606 -9.55526 -9.36151 -8.64153 -6.46676 0.55017 0.66687 1.36549 1.44256 1.62753 2.36925 2.86225 2.96406 3.01084 3.63575 3.75213 4.00475 4.02418 4.14557 4.21877 4.25248 4.30612 4.33307 4.51066 4.63579 4.70785 4.79880 4.86421 4.90150 4.96052 5.01767 5.21796 5.23812 5.37201 5.67428 5.70803 5.73414 5.92280 5.94943 6.00659 6.26402 6.41701 6.55415 6.78707 7.32319 8.55353 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.016702 B = 0.010831 C = 0.007696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.013559 B = 2584.619028 C = 3637.598401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 1.076 2.924 4 H -0.289 1.289 5 H -0.268 1.268 6 H -0.241 1.241 7 C -0.606 4.606 8 H 0.014 0.986 9 C 0.217 3.783 10 H 0.039 0.961 11 N -0.847 5.847 12 C -0.055 4.055 13 C -0.126 4.126 14 C -0.128 4.128 15 C -0.135 4.135 16 C -0.121 4.121 17 C -0.087 4.087 18 C -0.085 4.085 19 H 0.076 0.924 20 C -0.140 4.140 21 C 0.053 3.947 22 O -0.398 6.398 23 C 0.063 3.937 24 H 0.253 0.747 25 H 0.331 0.669 26 H 0.328 0.672 27 H 0.120 0.880 28 H 0.142 0.858 29 H 0.148 0.852 30 H 0.136 0.864 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.608 -6.705 3.499 13.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.212 4.212 3 Si 0.898 3.102 4 H -0.215 1.215 5 H -0.193 1.193 6 H -0.166 1.166 7 C -0.646 4.646 8 H 0.032 0.968 9 C 0.107 3.893 10 H 0.056 0.944 11 N -0.378 5.378 12 C -0.056 4.056 13 C -0.145 4.145 14 C -0.146 4.146 15 C -0.152 4.152 16 C -0.139 4.139 17 C -0.088 4.088 18 C -0.103 4.103 19 H 0.095 0.905 20 C -0.177 4.177 21 C -0.023 4.023 22 O -0.318 6.318 23 C -0.013 4.013 24 H 0.062 0.938 25 H 0.143 0.857 26 H 0.143 0.857 27 H 0.137 0.863 28 H 0.159 0.841 29 H 0.166 0.834 30 H 0.153 0.847 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.128 0.872 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.340 -5.249 3.734 13.042 hybrid contribution -1.903 -1.349 -0.218 2.343 sum 9.438 -6.598 3.516 12.040 Atomic orbital electron populations 1.70977 1.08200 1.29609 1.47754 1.27047 0.96099 1.05736 0.92353 0.83620 0.74909 0.72291 0.79383 1.21520 1.19342 1.16566 1.22549 0.96169 0.94348 1.51513 0.96767 1.18116 0.92676 0.90931 0.87557 0.94371 1.59723 1.62026 1.08441 1.07577 1.20000 0.95669 0.96583 0.93326 1.21102 1.00366 0.94273 0.98726 1.21398 0.99329 0.95534 0.98321 1.21325 1.01236 1.00475 0.92211 1.21096 1.00169 0.92759 0.99884 1.19447 1.00803 0.95451 0.93070 1.21629 0.96062 0.98857 0.93796 0.90540 1.23259 0.99877 1.01010 0.93572 1.23475 0.80681 0.99931 0.98234 1.88314 1.25276 1.94884 1.23294 1.23249 0.96077 1.01967 0.80024 0.93782 0.85744 0.85717 0.86252 0.84067 0.83385 0.84658 0.91528 0.89175 0.87155 0.92464 0.89824 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.08 13.70 21.45 0.29 -55.79 16 2 C -0.01 -0.68 5.44 84.65 0.46 -0.22 16 3 Si 1.08 47.70 26.54 68.60 1.82 49.52 16 4 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 5 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 6 H -0.24 -9.33 5.53 99.48 0.55 -8.78 16 7 C -0.61 -32.58 8.32 25.60 0.21 -32.37 16 8 H 0.01 0.86 7.99 -2.91 -0.02 0.84 16 9 C 0.22 9.89 1.79 43.42 0.08 9.97 16 10 H 0.04 1.78 5.41 -2.39 -0.01 1.77 16 11 N -0.85 -35.46 8.50 -174.96 -1.49 -36.94 16 12 C -0.06 -2.28 5.03 -19.87 -0.10 -2.38 16 13 C -0.13 -4.68 9.27 22.27 0.21 -4.47 16 14 C -0.13 -3.84 10.05 22.27 0.22 -3.62 16 15 C -0.13 -3.71 10.05 22.27 0.22 -3.48 16 16 C -0.12 -3.68 8.12 22.27 0.18 -3.50 16 17 C -0.09 -3.21 4.93 -19.87 -0.10 -3.31 16 18 C -0.08 -3.05 2.86 -10.28 -0.03 -3.08 16 19 H 0.08 3.26 5.45 -2.39 -0.01 3.25 16 20 C -0.14 -4.44 6.54 32.05 0.21 -4.23 16 21 C 0.05 1.48 7.78 72.65 0.56 2.04 16 22 O -0.40 -12.41 11.36 -148.98 -1.69 -14.11 16 23 C 0.06 1.96 7.31 72.45 0.53 2.49 16 24 H 0.25 15.63 8.72 -92.71 -0.81 14.82 16 25 H 0.33 13.68 7.60 -89.69 -0.68 13.00 16 26 H 0.33 13.58 5.67 -89.69 -0.51 13.07 16 27 H 0.12 4.34 6.41 -2.91 -0.02 4.32 16 28 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 29 H 0.15 2.98 8.06 -2.91 -0.02 2.95 16 30 H 0.14 3.44 7.30 -2.91 -0.02 3.42 16 31 H 0.07 2.37 8.14 -2.39 -0.02 2.36 16 32 H 0.09 2.55 6.81 -2.39 -0.02 2.53 16 33 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.08 2.36 7.05 -2.39 -0.02 2.34 16 36 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -62.54 284.42 1.32 -61.22 By element: Atomic # 1 Polarization: 42.54 SS G_CDS: -0.28 Total: 42.25 kcal Atomic # 6 Polarization: -48.82 SS G_CDS: 2.66 Total: -46.16 kcal Atomic # 7 Polarization: -91.54 SS G_CDS: -1.19 Total: -92.73 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -1.69 Total: -14.11 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 1.82 Total: 49.52 kcal Total: -62.54 1.32 -61.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260257346.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.959 kcal (2) G-P(sol) polarization free energy of solvation -62.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds