Wall clock time and date at job start Mon Mar 30 2020 06:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99824 * 2 1 4 4 H 1.48497 * 109.46771 * 239.99634 * 3 2 1 5 5 H 1.48496 * 109.47257 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46927 * 120.00044 * 3 2 1 7 7 C 1.37871 * 120.00185 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00664 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99657 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47385 * 299.99739 * 9 7 2 11 11 N 1.46895 * 109.47677 * 59.99837 * 9 7 2 12 12 C 1.50706 * 109.47219 * 180.02562 * 9 7 2 13 13 C 1.38260 * 119.99718 * 265.00317 * 12 9 7 14 14 C 1.38215 * 119.99680 * 179.97438 * 13 12 9 15 15 C 1.38256 * 120.00141 * 359.94722 * 14 13 12 16 16 C 1.38211 * 120.00062 * 0.28711 * 15 14 13 17 17 C 1.38211 * 120.00259 * 84.97402 * 12 9 7 18 18 C 1.50707 * 119.99838 * 0.02562 * 17 12 9 19 19 H 1.09001 * 110.43375 * 0.70719 * 18 17 12 20 20 C 1.54809 * 110.49009 * 238.15475 * 18 17 12 21 21 C 1.55217 * 101.98614 * 220.52103 * 20 18 17 22 22 O 1.44380 * 103.56776 * 36.88286 * 21 20 18 23 23 C 1.43740 * 106.97585 * 320.00818 * 22 21 20 24 24 H 0.97000 * 119.99833 * 0.02562 * 1 2 3 25 25 H 1.00903 * 110.99914 * 296.05188 * 11 9 7 26 26 H 1.00905 * 110.99827 * 59.99580 * 11 9 7 27 27 H 1.07996 * 119.99860 * 359.96763 * 13 12 9 28 28 H 1.07999 * 119.99782 * 179.97438 * 14 13 12 29 29 H 1.08002 * 119.99676 * 180.02562 * 15 14 13 30 30 H 1.07998 * 120.00348 * 179.72205 * 16 15 14 31 31 H 1.09001 * 110.90591 * 338.64131 * 20 18 17 32 32 H 1.08997 * 110.90529 * 102.24726 * 20 18 17 33 33 H 1.09004 * 110.52005 * 278.38315 * 21 20 18 34 34 H 1.09002 * 110.78028 * 155.50348 * 21 20 18 35 35 H 1.08998 * 109.88137 * 267.09098 * 23 22 21 36 36 H 1.09003 * 110.00601 * 146.00716 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6240 -2.5566 0.8903 11 7 0.4069 -2.5772 -1.1991 12 6 2.2303 -3.6446 0.0018 13 6 2.6011 -4.2383 -1.1905 14 6 3.4996 -5.2885 -1.1894 15 6 4.0284 -5.7446 0.0039 16 6 3.6540 -5.1543 1.1962 17 6 2.7581 -4.1012 1.1947 18 6 2.3540 -3.4540 2.4943 19 1 1.6338 -2.6558 2.3142 20 6 3.5971 -2.9051 3.2360 21 6 3.2844 -3.2791 4.7096 22 8 2.6359 -4.5646 4.6026 23 6 1.7669 -4.5024 3.4593 24 1 -0.4850 0.8401 -0.0004 25 1 -0.3004 -1.8577 -1.1910 26 1 0.9652 -2.5260 -2.0381 27 1 2.1886 -3.8815 -2.1226 28 1 3.7890 -5.7526 -2.1207 29 1 4.7308 -6.5650 0.0046 30 1 4.0636 -5.5135 2.1287 31 1 4.5050 -3.4014 2.8933 32 1 3.6765 -1.8248 3.1152 33 1 2.6122 -2.5460 5.1555 34 1 4.2027 -3.3598 5.2913 35 1 0.7666 -4.2010 3.7700 36 1 1.7253 -5.4751 2.9691 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260257362.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:12 Heat of formation + Delta-G solvation = -29.964210 kcal Electronic energy + Delta-G solvation = -18360.106260 eV Core-core repulsion = 15615.408384 eV Total energy + Delta-G solvation = -2744.697876 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.74251 -38.02140 -34.73585 -32.87326 -31.66035 -29.75650 -29.13162 -27.87006 -26.01100 -23.09392 -22.81258 -21.94786 -19.95472 -19.41939 -16.60455 -16.51961 -15.96328 -15.51505 -14.83275 -14.55347 -14.49793 -13.86015 -13.63931 -13.07510 -12.82917 -12.55739 -12.14822 -12.04614 -11.65653 -11.26330 -11.20396 -11.09195 -10.94967 -10.90060 -10.69463 -10.29491 -10.14276 -10.03839 -9.48519 -9.35378 -8.71621 -8.06498 -7.83089 -7.24061 -6.14359 -4.31554 2.02651 2.17267 3.18643 3.24701 3.27550 4.23692 4.26234 4.48301 5.05637 5.08067 5.18342 5.33405 5.49434 5.52037 5.58676 5.69492 5.70823 5.94085 5.99529 6.07720 6.13622 6.15097 6.35153 6.40616 6.50860 6.65828 6.75338 6.84178 7.10030 7.13936 7.22086 7.26762 7.68275 7.68816 7.79511 8.05024 8.61811 8.88355 9.06088 9.40487 10.82528 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.017408 B = 0.009506 C = 0.007245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.027397 B = 2944.682244 C = 3863.659935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.067 3.933 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.540 4.540 8 H 0.055 0.945 9 C 0.239 3.761 10 H 0.051 0.949 11 N -0.852 5.852 12 C -0.023 4.023 13 C -0.112 4.112 14 C -0.129 4.129 15 C -0.148 4.148 16 C -0.119 4.119 17 C -0.080 4.080 18 C -0.082 4.082 19 H 0.112 0.888 20 C -0.141 4.141 21 C 0.045 3.955 22 O -0.385 6.385 23 C 0.054 3.946 24 H 0.266 0.734 25 H 0.355 0.645 26 H 0.311 0.689 27 H 0.120 0.880 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.057 0.943 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.310 -6.241 3.482 8.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.135 4.135 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.580 4.580 8 H 0.073 0.927 9 C 0.129 3.871 10 H 0.069 0.931 11 N -0.382 5.382 12 C -0.023 4.023 13 C -0.131 4.131 14 C -0.147 4.147 15 C -0.166 4.166 16 C -0.137 4.137 17 C -0.080 4.080 18 C -0.101 4.101 19 H 0.130 0.870 20 C -0.179 4.179 21 C -0.031 4.031 22 O -0.304 6.304 23 C -0.023 4.023 24 H 0.076 0.924 25 H 0.172 0.828 26 H 0.121 0.879 27 H 0.138 0.862 28 H 0.127 0.873 29 H 0.126 0.874 30 H 0.130 0.870 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.076 0.924 34 H 0.105 0.895 35 H 0.076 0.924 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.937 -7.020 3.906 9.429 hybrid contribution 0.892 2.176 -0.445 2.393 sum 5.828 -4.844 3.461 8.331 Atomic orbital electron populations 1.69728 1.05795 1.27351 1.50301 1.25000 0.94907 0.99191 0.94417 0.86613 0.79612 0.82774 0.78795 1.20249 1.21194 1.20130 1.21724 0.93550 0.90809 1.51893 0.92707 1.18026 0.89099 0.88313 0.91652 0.93149 1.59565 1.18498 1.56045 1.04082 1.20363 0.95459 0.94981 0.91511 1.20962 0.97491 0.96110 0.98495 1.21033 0.98416 0.97945 0.97311 1.20838 1.01855 1.01084 0.92846 1.20848 0.98494 0.96835 0.97510 1.19415 0.98250 0.96386 0.93995 1.21561 0.98189 0.98084 0.92232 0.86966 1.23217 0.98226 1.02391 0.94052 1.23596 0.96974 0.85564 0.96981 1.88791 1.60216 1.33248 1.48151 1.23326 0.93241 0.99930 0.85787 0.92362 0.82849 0.87878 0.86219 0.87301 0.87372 0.86965 0.90745 0.89771 0.92354 0.89528 0.92436 0.89894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.68 11.54 55.43 0.64 -23.04 16 2 C 0.07 1.74 5.38 -17.82 -0.10 1.65 16 3 Si 0.89 20.37 29.54 -169.99 -5.02 15.34 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.54 -13.82 8.54 -34.44 -0.29 -14.12 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 9 C 0.24 5.68 2.26 -70.02 -0.16 5.53 16 10 H 0.05 1.31 6.38 -51.93 -0.33 0.98 16 11 N -0.85 -19.74 8.79 -6.65 -0.06 -19.80 16 12 C -0.02 -0.48 4.99 -104.62 -0.52 -1.00 16 13 C -0.11 -2.19 9.27 -39.58 -0.37 -2.56 16 14 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 16 15 C -0.15 -2.41 10.05 -39.58 -0.40 -2.81 16 16 C -0.12 -2.04 8.10 -39.58 -0.32 -2.36 16 17 C -0.08 -1.53 4.75 -104.62 -0.50 -2.03 16 18 C -0.08 -1.49 3.03 -90.24 -0.27 -1.76 16 19 H 0.11 2.33 5.52 -51.93 -0.29 2.04 16 20 C -0.14 -2.26 6.62 -24.60 -0.16 -2.43 16 21 C 0.05 0.65 7.72 38.33 0.30 0.94 16 22 O -0.38 -6.28 11.52 -35.23 -0.41 -6.69 16 23 C 0.05 0.88 7.08 37.73 0.27 1.15 16 24 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 25 H 0.36 8.81 7.08 -39.29 -0.28 8.53 16 26 H 0.31 6.88 7.21 -39.29 -0.28 6.60 16 27 H 0.12 2.28 6.29 -52.49 -0.33 1.95 16 28 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 30 H 0.11 1.77 7.85 -52.49 -0.41 1.36 16 31 H 0.07 1.16 7.08 -51.93 -0.37 0.80 16 32 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.08 1.34 7.29 -51.93 -0.38 0.96 16 LS Contribution 289.98 15.07 4.37 4.37 Total: -1.00 -26.62 289.98 -8.14 -34.77 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: -4.75 Total: 17.44 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: -2.92 Total: -22.39 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.58 Total: -42.84 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -0.41 Total: -6.69 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -26.62 -8.14 -34.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260257362.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.803 kcal (2) G-P(sol) polarization free energy of solvation -26.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds